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| author | Ricardo Wurmus <rekado@elephly.net> | 2018-11-07 23:06:28 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-11-07 23:17:35 +0100 |
| commit | e0a8fc85dd1ee9e9ceef790b311691068a664a28 (patch) | |
| tree | 4b0883abde279631c206e5141a9d329762f788fd /gnu | |
| parent | 62365244092576f62931e3178c4ea5598fd91e7b (diff) | |
| download | patches-e0a8fc85dd1ee9e9ceef790b311691068a664a28.tar patches-e0a8fc85dd1ee9e9ceef790b311691068a664a28.tar.gz | |
gnu: snap-aligner: Fetch sources from git.
* gnu/packages/bioinformatics.scm (snap-aligner)[source]: Fetch from git.
[arguments]: Use INVOKE.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 14 |
1 files changed, 7 insertions, 7 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index a571d72bb5..3d230a1036 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5906,20 +5906,20 @@ optionally compressed by gzip.") (name "snap-aligner") (version "1.0beta.18") (source (origin - (method url-fetch) - (uri (string-append - "https://github.com/amplab/snap/archive/v" - version ".tar.gz")) - (file-name (string-append name "-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/amplab/snap.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) (sha256 (base32 - "1vnsjwv007k1fl1q7d681kbwn6bc66cgw6h16hym6gvyy71qv2ly")))) + "01w3qq4wm07z73vky0cfwlmrbf50n3w722cxrlzxfi99mnb808d8")))) (build-system gnu-build-system) (arguments '(#:phases (modify-phases %standard-phases (delete 'configure) - (replace 'check (lambda _ (zero? (system* "./unit_tests")))) + (replace 'check (lambda _ (invoke "./unit_tests") #t)) (replace 'install (lambda* (#:key outputs #:allow-other-keys) (let* ((out (assoc-ref outputs "out")) |