aboutsummaryrefslogtreecommitdiff
path: root/gnu
diff options
context:
space:
mode:
authorRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2016-01-13 16:27:29 +0100
committerRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2016-02-24 17:26:39 +0100
commit486da4914397005b822e9329b1f511acfefb76cb (patch)
tree5d32eb6cbc88ab1cddd4db0a7a7ac442acda1dd6 /gnu
parent6caa4dfa37e9b87336908e188500c14b402a0090 (diff)
downloadpatches-486da4914397005b822e9329b1f511acfefb76cb.tar
patches-486da4914397005b822e9329b1f511acfefb76cb.tar.gz
gnu: Add r-org-hs-eg-db.
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): New variable.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm26
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a72765ab8b..d007ae80d4 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4257,6 +4257,32 @@ genomic feature data as long as it has minimal information on the locations of
genomic intervals. In addition, it can use BAM or BigWig files as input.")
(license license:artistic2.0)))
+(define-public r-org-hs-eg-db
+ (package
+ (name "r-org-hs-eg-db")
+ (version "3.2.3")
+ (source (origin
+ (method url-fetch)
+ ;; We cannot use bioconductor-uri here because this tarball is
+ ;; located under "data/annotation/" instead of "bioc/".
+ (uri (string-append "http://www.bioconductor.org/packages/"
+ "release/data/annotation/src/contrib/"
+ "org.Hs.eg.db_" version ".tar.gz"))
+ (sha256
+ (base32
+ "0xicgkbh6xkvs74s1piafqac63dyz2ycdyil4pj4ghhxx2sabm6p"))))
+ (properties
+ `((upstream-name . "org.Hs.eg.db")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)))
+ (home-page "http://www.bioconductor.org/packages/org.Hs.eg.db/")
+ (synopsis "Genome wide annotation for Human")
+ (description
+ "This package provides mappings from Entrez gene identifiers to various
+annotations for the human genome.")
+ (license license:artistic2.0)))
+
(define-public r-qtl
(package
(name "r-qtl")