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authorRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2016-04-06 16:34:19 +0200
committerRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2016-04-19 12:16:01 +0200
commit4db9433aa02ced6112170a6815377be3da6d2ef9 (patch)
tree27956ac78d4b2acedca176344e55599e7b6f0706 /gnu
parent3fd4b90d1dee4547df16e1469e8dcefce1ac4f36 (diff)
downloadpatches-4db9433aa02ced6112170a6815377be3da6d2ef9.tar
patches-4db9433aa02ced6112170a6815377be3da6d2ef9.tar.gz
gnu: Add python-twobitreader.
* gnu/packages/bioinformatics.scm (python-twobitreader, python2-twobitreader): New variables.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm28
1 files changed, 28 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b76aadc6a2..bcb27571a1 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -922,6 +922,34 @@ also includes an interface for tabix.")
(define-public python2-pysam
(package-with-python2 python-pysam))
+(define-public python-twobitreader
+ (package
+ (name "python-twobitreader")
+ (version "3.1.2")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "twobitreader" version))
+ (sha256
+ (base32
+ "0y408fp6psqzwxpcpqn0wp7fr41dwz8d54wpj6j261fj5q8vs169"))))
+ (properties `((python2-variant . ,(delay python2-twobitreader))))
+ (build-system python-build-system)
+ (native-inputs
+ `(("python-sphinx" ,python-sphinx)))
+ (home-page "https://github.com/benjschiller/twobitreader")
+ (synopsis "Python library for reading .2bit files")
+ (description
+ "twobitreader is a Python library for reading .2bit files as used by the
+UCSC genome browser.")
+ (license license:artistic2.0)))
+
+(define-public python2-twobitreader
+ (let ((base (package-with-python2 (strip-python2-variant python-twobitreader))))
+ (package
+ (inherit base)
+ (native-inputs `(("python2-setuptools" ,python2-setuptools)
+ ,@(package-native-inputs base))))))
+
(define-public cd-hit
(package
(name "cd-hit")