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| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2018-09-05 16:00:02 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-09-10 16:50:26 +0200 |
| commit | 1f41f01c1499fb0aa5933b9b60d2a18c2bef9d5c (patch) | |
| tree | 2e32df007af0de2cec71fc4e9a0728ace86eb0ac /gnu | |
| parent | a9d496b353e71f22e5ace5bff9319fc74dfb6643 (diff) | |
| download | patches-1f41f01c1499fb0aa5933b9b60d2a18c2bef9d5c.tar patches-1f41f01c1499fb0aa5933b9b60d2a18c2bef9d5c.tar.gz | |
gnu: Add python-pypairix.
* gnu/packages/bioinformatics.scm (python-pypairix): New variable.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index dd8ed725d8..9b047c21b8 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13532,3 +13532,27 @@ range envelopment. This library was designed to allow tagging text and time intervals, where the intervals include the lower bound but not the upper bound.") (license license:asl2.0))) + +(define-public python-pypairix + (package + (name "python-pypairix") + (version "0.3.6") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pypairix" version)) + (sha256 + (base32 + "0zs92b74s5v4xy2h16s15f3z6l4nnbw8x8zyif7xx5xpafjn0xss")))) + (build-system python-build-system) + ;; FIXME: the tests fail because test.support cannot be loaded: + ;; ImportError: cannot import name 'support' + (arguments '(#:tests? #f)) + (inputs + `(("zlib" ,zlib))) + (home-page "https://github.com/4dn-dcic/pairix") + (synopsis "Support for querying pairix-indexed bgzipped text files") + (description + "Pypairix is a Python module for fast querying on a pairix-indexed +bgzipped text file that contains a pair of genomic coordinates per line.") + (license license:expat))) |