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| author | Jakub Kądziołka <kuba@kadziolka.net> | 2020-03-28 00:46:23 +0100 |
|---|---|---|
| committer | Jakub Kądziołka <kuba@kadziolka.net> | 2020-04-05 20:43:17 +0200 |
| commit | 7fe746e071e3177e76dad9e2bcd1d53e87187f1a (patch) | |
| tree | 4480c8c08138e82d87d0df76c8a5d359ac514626 /gnu | |
| parent | b3b33da07097af1c61d23f662902650dcdeb25af (diff) | |
| download | patches-7fe746e071e3177e76dad9e2bcd1d53e87187f1a.tar patches-7fe746e071e3177e76dad9e2bcd1d53e87187f1a.tar.gz | |
gnu: python-intervaltree: Update to 3.0.2.
* gnu/packages/bioinformatics.scm (python-intervaltree): Update to 3.0.2.
[arguments]: Don't skip the tests, work around the problematic
sanity-check instead.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 19 |
1 files changed, 15 insertions, 4 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index d69c2aea63..943369b275 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -16,6 +16,7 @@ ;;; Copyright © 2019 Brian Leung <bkleung89@gmail.com> ;;; Copyright © 2019 Brett Gilio <brettg@gnu.org> ;;; Copyright © 2020 Björn Höfling <bjoern.hoefling@bjoernhoefling.de> +;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net> ;;; ;;; This file is part of GNU Guix. ;;; @@ -13552,17 +13553,27 @@ allowing the insertion of arbitrary types into the tree.") (define-public python-intervaltree (package (name "python-intervaltree") - (version "2.1.0") + (version "3.0.2") (source (origin (method url-fetch) (uri (pypi-uri "intervaltree" version)) (sha256 (base32 - "02w191m9zxkcjqr1kv2slxvhymwhj3jnsyy3a28b837pi15q19dc")))) + "0wz234g6irlm4hivs2qzmnywk0ss06ckagwh15nflkyb3p462kyb")))) (build-system python-build-system) - ;; FIXME: error when collecting tests - (arguments '(#:tests? #f)) + (arguments + `(#:phases + (modify-phases %standard-phases + ;; pytest seems to have a check to make sure the user is testing + ;; their checked-out code and not an installed, potentially + ;; out-of-date copy. This is harmless here, since we just installed + ;; the package, so we disable the check to avoid skipping tests + ;; entirely. + (add-before 'check 'import-mismatch-error-workaround + (lambda _ + (setenv "PY_IGNORE_IMPORTMISMATCH" "1") + #t))))) (propagated-inputs `(("python-sortedcontainers" ,python-sortedcontainers))) (native-inputs |