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| author | Ben Woodcroft <donttrustben@gmail.com> | 2016-01-11 00:28:25 +1000 |
|---|---|---|
| committer | Ben Woodcroft <donttrustben@gmail.com> | 2016-01-11 00:36:13 +1000 |
| commit | 6573ac82ad83cacd264ae20f9266d21cb5852f12 (patch) | |
| tree | b53c9fcb56a99e03ac7748d531d840a7ffa5b55f /gnu | |
| parent | 695bea9803b6ab12ba9fe8a55d663745c97cf55b (diff) | |
| download | patches-6573ac82ad83cacd264ae20f9266d21cb5852f12.tar patches-6573ac82ad83cacd264ae20f9266d21cb5852f12.tar.gz | |
gnu: bedtools: Use modify-phases.
* gnu/packages/bioinformatics.scm (bedtools)[arguments]: Use modify-phases.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 38 |
1 files changed, 19 insertions, 19 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c5983274c3..df0e23da89 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -224,25 +224,25 @@ computational cluster.") (arguments '(#:test-target "test" #:phases - (alist-cons-after - 'unpack 'patch-makefile-SHELL-definition - (lambda _ - ;; patch-makefile-SHELL cannot be used here as it does not - ;; yet patch definitions with `:='. Since changes to - ;; patch-makefile-SHELL result in a full rebuild, features - ;; of patch-makefile-SHELL are reimplemented here. - (substitute* "Makefile" - (("^SHELL := .*$") (string-append "SHELL := " (which "bash") " -e \n")))) - (alist-delete - 'configure - (alist-replace - 'install - (lambda* (#:key outputs #:allow-other-keys) - (let ((bin (string-append (assoc-ref outputs "out") "/bin/"))) - (for-each (lambda (file) - (install-file file bin)) - (find-files "bin" ".*")))) - %standard-phases))))) + (modify-phases %standard-phases + (add-after 'unpack 'patch-makefile-SHELL-definition + (lambda _ + ;; patch-makefile-SHELL cannot be used here as it does not + ;; yet patch definitions with `:='. Since changes to + ;; patch-makefile-SHELL result in a full rebuild, features + ;; of patch-makefile-SHELL are reimplemented here. + (substitute* "Makefile" + (("^SHELL := .*$") + (string-append "SHELL := " (which "bash") " -e \n"))) + #t)) + (delete 'configure) + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let ((bin (string-append (assoc-ref outputs "out") "/bin/"))) + (for-each (lambda (file) + (install-file file bin)) + (find-files "bin" ".*"))) + #t))))) (home-page "https://github.com/arq5x/bedtools2") (synopsis "Tools for genome analysis and arithmetic") (description |