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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-09-05 12:03:38 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-09-05 12:06:43 +0200 |
| commit | 79c6d8781b1e3d09e1e1555675c144d821487535 (patch) | |
| tree | 6e5d06ecba82c80f3b1b735fc4a94d22c8b41923 /gnu | |
| parent | 0e8b91dbc45306984d682307d8b40b0e323bb4be (diff) | |
| download | patches-79c6d8781b1e3d09e1e1555675c144d821487535.tar patches-79c6d8781b1e3d09e1e1555675c144d821487535.tar.gz | |
gnu: bwa-meth: Capture one more reference to "bwa".
Reported by: Alexander.Blume <Alexander.Blume@mdc-berlin.de>
* gnu/packages/bioinformatics.scm (bwa-meth)[arguments]: Capture invocation of
"bwa index" to retain reference to "bwa" package.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index f5901703ce..f976cad22f 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1767,8 +1767,8 @@ well as many of the command line options.") (add-after 'unpack 'keep-references-to-bwa (lambda* (#:key inputs #:allow-other-keys) (substitute* "bwameth.py" - (("bwa mem") - (string-append (which "bwa") " mem")) + (("bwa (mem|index)" _ command) + (string-append (which "bwa") " " command)) ;; There's an ill-advised check for "samtools" on PATH. (("^checkX.*") "")) #t))))) |