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authorRoel Janssen <roel@gnu.org>2020-04-27 10:56:07 +0200
committerRoel Janssen <roel@gnu.org>2020-04-27 10:57:22 +0200
commit0c0ef9c5a6e54206eb9ca51f242cd95e07406f26 (patch)
treee27ecdc75742ba2fab445f1e8351f40124baf466 /gnu
parentd4f86c8b6634d0814ceb51cce4d05da1e16bf408 (diff)
downloadpatches-0c0ef9c5a6e54206eb9ca51f242cd95e07406f26.tar
patches-0c0ef9c5a6e54206eb9ca51f242cd95e07406f26.tar.gz
gnu: Add r-coverageview.
* gnu/packages/bioconductor.scm (r-coverageview): New variable.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioconductor.scm27
1 files changed, 27 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 66ff6114c3..83ac5dcf7c 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1069,6 +1069,33 @@ examples' of Affymetrix data, unlike the artificial examples included in the
package @code{affy}.")
(license license:gpl2+)))
+(define-public r-coverageview
+ (package
+ (name "r-coverageview")
+ (version "1.24.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "CoverageView" version))
+ (sha256
+ (base32
+ "0s47svs7xnr9jkylq0dxidqrigihdddiprcl0951vjr4w7kmb5nf"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-s4vectors" ,r-s4vectors)
+ ("r-iranges" ,r-iranges)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-genomicalignments" ,r-genomicalignments)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-rsamtools" ,r-rsamtools)))
+ (home-page "https://bioconductor.org/packages/CoverageView/")
+ (synopsis "Coverage visualization package for R")
+ (description "This package provides a framework for the visualization of
+genome coverage profiles. It can be used for ChIP-seq experiments, but it can
+be also used for genome-wide nucleosome positioning experiments or other
+experiment types where it is important to have a framework in order to inspect
+how the coverage distributed across the genome.")
+ (license license:artistic2.0)))
+
(define-public r-curatedtcgadata
(package
(name "r-curatedtcgadata")