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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-18 23:45:15 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-18 23:46:27 +0100 |
| commit | 9e1d9a0a46c502f1e2dcc03351c4a46e4b97006a (patch) | |
| tree | 6710a40444ce11e312afd7a1c070296660141f1d /gnu | |
| parent | 0fa926c2e595e2e121a5e65b70fda63e8e37904c (diff) | |
| download | patches-9e1d9a0a46c502f1e2dcc03351c4a46e4b97006a.tar patches-9e1d9a0a46c502f1e2dcc03351c4a46e4b97006a.tar.gz | |
gnu: python-biom-format: Fix build.
* gnu/packages/bioinformatics.scm (python-biom-format)[source]: Remove
generated C files.
[arguments]: Disable second broken test.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 14 |
1 files changed, 12 insertions, 2 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 9eaf40adbd..371c13e121 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -896,20 +896,30 @@ Python.") (file-name (git-file-name name version)) (sha256 (base32 - "1rna16lyk5aqhnv0dp77wwaplias93f1vw28ad3jmyw6hwkai05v")))) + "1rna16lyk5aqhnv0dp77wwaplias93f1vw28ad3jmyw6hwkai05v")) + (modules '((guix build utils))) + (snippet '(begin + ;; Delete generated C files. + (for-each delete-file (find-files "." "\\.c")) + #t)))) (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases (add-after 'unpack 'use-cython (lambda _ (setenv "USE_CYTHON" "1") #t)) - (add-after 'unpack 'disable-broken-test + (add-after 'unpack 'disable-broken-tests (lambda _ (substitute* "biom/tests/test_cli/test_validate_table.py" (("^(.+)def test_invalid_hdf5" m indent) (string-append indent "@npt.dec.skipif(True, msg='Guix')\n" m))) + (substitute* "biom/tests/test_table.py" + (("^(.+)def test_from_hdf5_issue_731" m indent) + (string-append indent + "@npt.dec.skipif(True, msg='Guix')\n" + m))) #t)) (add-before 'reset-gzip-timestamps 'make-files-writable (lambda* (#:key outputs #:allow-other-keys) |