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| author | Ricardo Wurmus <rekado@elephly.net> | 2018-11-07 19:06:30 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-11-07 19:06:30 +0100 |
| commit | 383cb7b8e6f15ec4191a55d84a90d2e0ed570fe3 (patch) | |
| tree | 967fe743757f8e9f8fa18218c276fff66477d288 /gnu | |
| parent | 20ee3e8b76e7197164267b186b0a0b5ec93d50dc (diff) | |
| download | patches-383cb7b8e6f15ec4191a55d84a90d2e0ed570fe3.tar patches-383cb7b8e6f15ec4191a55d84a90d2e0ed570fe3.tar.gz | |
gnu: bioawk: Fetch sources from git.
* gnu/packages/bioinformatics.scm (bioawk)[source]: Fetch from git.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 28 |
1 files changed, 15 insertions, 13 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 505f98836b..ab317aa72c 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -563,12 +563,14 @@ independently with transcriptional regulation.") (name "bioawk") (version "1.0") (source (origin - (method url-fetch) - (uri (string-append "https://github.com/lh3/bioawk/archive/v" - version ".tar.gz")) - (file-name (string-append name "-" version ".tar.gz")) - (sha256 - (base32 "1daizxsk17ahi9n58fj8vpgwyhzrzh54bzqhanjanp88kgrz7gjw")))) + (method git-fetch) + (uri (git-reference + (url "https://github.com/lh3/bioawk.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1pxc3zdnirxbf9a0az698hd8xdik7qkhypm7v6hn922x8y9qmspm")))) (build-system gnu-build-system) (inputs `(("zlib" ,zlib))) @@ -582,13 +584,13 @@ independently with transcriptional regulation.") (modify-phases %standard-phases (delete 'configure) ; There is no configure phase. (replace 'install - (lambda* (#:key outputs #:allow-other-keys) - (let* ((out (assoc-ref outputs "out")) - (bin (string-append out "/bin")) - (man (string-append out "/share/man/man1"))) - (mkdir-p man) - (copy-file "awk.1" (string-append man "/bioawk.1")) - (install-file "bioawk" bin))))))) + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (bin (string-append out "/bin")) + (man (string-append out "/share/man/man1"))) + (mkdir-p man) + (copy-file "awk.1" (string-append man "/bioawk.1")) + (install-file "bioawk" bin))))))) (home-page "https://github.com/lh3/bioawk") (synopsis "AWK with bioinformatics extensions") (description "Bioawk is an extension to Brian Kernighan's awk, adding the |