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authorRicardo Wurmus <rekado@elephly.net>2018-02-12 15:19:11 +0100
committerRicardo Wurmus <rekado@elephly.net>2018-02-12 15:29:43 +0100
commit6fb1dc17a3898eb04178235d86aa0da480523d34 (patch)
treea692479b83e2bd372c9e20b84b004dbc7f43ec0a /gnu
parent9ec08988249312d4f09d0e2e9da0164764783b12 (diff)
downloadpatches-6fb1dc17a3898eb04178235d86aa0da480523d34.tar
patches-6fb1dc17a3898eb04178235d86aa0da480523d34.tar.gz
gnu: Add r-singlecellexperiment.
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): New variable.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm27
1 files changed, 27 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a5a4abb1dd..912769efb7 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10511,6 +10511,33 @@ variety of commonly used matrix types, including sparse and HDF5-backed
matrices.")
(license license:gpl3)))
+(define-public r-singlecellexperiment
+ (package
+ (name "r-singlecellexperiment")
+ (version "1.0.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "SingleCellExperiment" version))
+ (sha256
+ (base32
+ "1r276i97w64a5vdlg6952gkj7bls909p42zl8fn8yz87cdwyaars"))))
+ (properties
+ `((upstream-name . "SingleCellExperiment")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)))
+ (home-page "https://bioconductor.org/packages/SingleCellExperiment")
+ (synopsis "S4 classes for single cell data")
+ (description "This package defines an S4 class for storing data from
+single-cell experiments. This includes specialized methods to store and
+retrieve spike-in information, dimensionality reduction coordinates and size
+factors for each cell, along with the usual metadata for genes and
+libraries.")
+ (license license:gpl3)))
+
(define htslib-for-sambamba
(let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5"))
(package