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authorRicardo Wurmus <rekado@elephly.net>2017-01-16 23:14:13 +0100
committerRicardo Wurmus <rekado@elephly.net>2017-01-16 23:18:27 +0100
commitb91cfa22e1b9f3e5d3a62ee65ee71a6e708b9b53 (patch)
tree314ea5421af6c6a1ffb23fde74238759fc286892 /gnu
parent1fdfbadff0c69efc3c5e5b5f013e494f6289c18a (diff)
downloadpatches-b91cfa22e1b9f3e5d3a62ee65ee71a6e708b9b53.tar
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gnu: Add r-centipede.
* gnu/packages/bioinformatics.scm (r-centipede): New variable.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm24
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4b9cd22f86..b14b7d4caf 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5159,6 +5159,30 @@ sequence.")
(supported-systems '("i686-linux" "x86_64-linux"))
(license license:bsd-3)))
+(define-public r-centipede
+ (package
+ (name "r-centipede")
+ (version "1.2")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "http://download.r-forge.r-project.org/"
+ "src/contrib/CENTIPEDE_" version ".tar.gz"))
+ (sha256
+ (base32
+ "1hsx6qgwr0i67fhy9257zj7s0ppncph2hjgbia5nn6nfmj0ax6l9"))))
+ (build-system r-build-system)
+ (home-page "http://centipede.uchicago.edu/")
+ (synopsis "Predict transcription factor binding sites")
+ (description
+ "CENTIPEDE applies a hierarchical Bayesian mixture model to infer regions
+of the genome that are bound by particular transcription factors. It starts
+by identifying a set of candidate binding sites, and then aims to classify the
+sites according to whether each site is bound or not bound by a transcription
+factor. CENTIPEDE is an unsupervised learning algorithm that discriminates
+between two different types of motif instances using as much relevant
+information as possible.")
+ (license (list license:gpl2+ license:gpl3+))))
+
(define-public r-vegan
(package
(name "r-vegan")