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| author | Brett Gilio <brettg@gnu.org> | 2019-12-23 17:31:06 -0600 |
|---|---|---|
| committer | Brett Gilio <brettg@gnu.org> | 2019-12-23 17:31:06 -0600 |
| commit | 5bc95d2bcd3392b4f5bd1c1d918bbae767b6e45c (patch) | |
| tree | ea2157f671fb40488fd92fadc20ab5c3521f9c6e /gnu | |
| parent | 02139b421427af725547b45bafae2aae0bb3d992 (diff) | |
| download | patches-5bc95d2bcd3392b4f5bd1c1d918bbae767b6e45c.tar patches-5bc95d2bcd3392b4f5bd1c1d918bbae767b6e45c.tar.gz | |
gnu: python-bbknn: Update to 1.3.6.
* gnu/packages/bioinformatics.scm (python-bbknn): Update to 1.3.6.
[arguments]: Disable tests until migration to python-scikit-learn.
[propgated-inputs]: Remove python-faiss, python-scanpy.
[propgated-inputs]: Add python-scipy, python-umap-learn.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 11 |
1 files changed, 7 insertions, 4 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 6488642df8..e01022e77a 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -14,6 +14,7 @@ ;;; Copyright © 2018, 2019 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> ;;; Copyright © 2019 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; Copyright © 2019 Brian Leung <bkleung89@gmail.com> +;;; Copyright © 2019 Brett Gilio <brettg@gnu.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -13289,21 +13290,23 @@ million cells.") (define-public python-bbknn (package (name "python-bbknn") - (version "1.3.1") + (version "1.3.6") (source (origin (method url-fetch) (uri (pypi-uri "bbknn" version)) (sha256 (base32 - "1qgdganvj3lyxj84v7alm23b9vqhwpn8z0115qndpnpy90qxynwz")))) + "1jbsh01f57zj4bhvjr3jh4532zznqd6nccmgrl3qi9gnhkf7c4y0")))) (build-system python-build-system) + (arguments + `(#:tests? #f)) ; TODO: Enable after migration to scikit-learn. (propagated-inputs `(("python-annoy" ,python-annoy) ("python-cython" ,python-cython) - ("python-faiss" ,python-faiss) ("python-numpy" ,python-numpy) - ("python-scanpy" ,python-scanpy))) + ("python-scipy" ,python-scipy) + ("python-umap-learn" ,python-umap-learn))) (home-page "https://github.com/Teichlab/bbknn") (synopsis "Batch balanced KNN") (description "BBKNN is a batch effect removal tool that can be directly |