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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-04-02 16:11:12 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-04-02 16:11:12 +0200 |
| commit | dc112a0fe2e0ffe00276cdd61167084ec1ff0849 (patch) | |
| tree | 725e4fc406cb18fa0d8206d6f23147dc00a7d9c8 /gnu | |
| parent | 82cc11745008a6c15c64c31bbd8b8b47f5cb8171 (diff) | |
| download | patches-dc112a0fe2e0ffe00276cdd61167084ec1ff0849.tar patches-dc112a0fe2e0ffe00276cdd61167084ec1ff0849.tar.gz | |
gnu: Add python-loompy-for-pigx-scrnaseq.
* gnu/packages/bioinformatics.scm (python-loompy-for-pigx-scrnaseq): New variable.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 17 |
1 files changed, 17 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index e9b866f6d7..c37fb6fe42 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -12038,6 +12038,23 @@ graphs. This library makes it easy to work with @file{.loom} files for single-cell RNA-seq data.") (license license:bsd-3))) +;; pigx-scrnaseq does not work with the latest version of loompy. +(define-public python-loompy-for-pigx-scrnaseq + (package (inherit python-loompy) + (name "python-loompy") + (version "2.0.3") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/linnarsson-lab/loompy.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0pjyl532pl8sbv71yci6h0agchn0naw2qjcwj50n6afrsahbsag3")))) + ;; There are none. + (arguments '(#:tests? #f)))) + ;; We cannot use the latest commit because it requires Java 9. (define-public java-forester (let ((commit "86b07efe302d5094b42deed9260f719a4c4ac2e6") |