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authorPjotr Prins <pjotr.public12@thebird.nl>2015-09-28 12:19:21 +0200
committerRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2015-09-28 12:22:47 +0200
commitb2bddb07ef16b10c926a598fcaf10d760d56c409 (patch)
tree10af674c758451f70fb66293f327d1d0b41484c7 /gnu
parent0e4e03f884fb915784569f4fbf11ae74287d7f8c (diff)
downloadpatches-b2bddb07ef16b10c926a598fcaf10d760d56c409.tar
patches-b2bddb07ef16b10c926a598fcaf10d760d56c409.tar.gz
gnu: Add bio-blastxmlparser.
* gnu/packages/bioinformatics.scm (bio-blastxmlparser): New variable.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm24
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 8fc6142f19..2d81f90a01 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2733,6 +2733,30 @@ chr+pos+alt information in a database.")
(home-page "https://github.com/pjotrp/bio-locus")
(license license:expat)))
+(define-public bio-blastxmlparser
+ (package
+ (name "bio-blastxmlparser")
+ (version "2.0.4")
+ (source (origin
+ (method url-fetch)
+ (uri (rubygems-uri "bio-blastxmlparser" version))
+ (sha256
+ (base32
+ "1wf4qygcmdjgcqm6flmvsagfr1gs9lf63mj32qv3z1f481zc5692"))))
+ (build-system ruby-build-system)
+ (propagated-inputs
+ `(("ruby-bio-logger" ,ruby-bio-logger)
+ ("ruby-nokogiri" ,ruby-nokogiri)))
+ (inputs
+ `(("ruby-rspec" ,ruby-rspec)))
+ (synopsis "Fast big data BLAST XML parser and library")
+ (description
+ "Very fast parallel big-data BLAST XML file parser which can be used as
+command line utility. Use blastxmlparser to: Parse BLAST XML; filter output;
+generate FASTA, JSON, YAML, RDF, JSON-LD, HTML, CSV, tabular output etc.")
+ (home-page "http://github.com/pjotrp/blastxmlparser")
+ (license license:expat)))
+
(define-public bioruby
(package
(name "bioruby")