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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-12-18 15:24:13 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-12-18 15:29:07 +0100 |
| commit | c373223e635cd8f5f2770dd0b05f3a310fc7f7dd (patch) | |
| tree | d81aeeeb9b883ad9a77d7b9353370913d896eb1b /gnu | |
| parent | 3eacc8fa8f9625427cbc07f27e5249c7b24fcb62 (diff) | |
| download | patches-c373223e635cd8f5f2770dd0b05f3a310fc7f7dd.tar patches-c373223e635cd8f5f2770dd0b05f3a310fc7f7dd.tar.gz | |
gnu: Add r-graphite.
* gnu/packages/bioconductor.scm (r-graphite): New variable.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 27 |
1 files changed, 27 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 2ca1679f8b..89cdda25d9 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -7011,3 +7011,30 @@ tidying methods. Tidying data makes it easy to recombine, reshape and visualize bioinformatics analyses.") ;; Any version of the LGPL. (license license:lgpl3+))) + +(define-public r-graphite + (package + (name "r-graphite") + (version "1.32.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "graphite" version)) + (sha256 + (base32 + "1r9fk0cpdwm7012pa85dkjcpkml2j89zcznpf4hfdz66anfyyycd")))) + (properties `((upstream-name . "graphite"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-checkmate" ,r-checkmate) + ("r-graph" ,r-graph) + ("r-httr" ,r-httr) + ("r-rappdirs" ,r-rappdirs))) + (home-page "https://bioconductor.org/packages/graphite/") + (synopsis "Networks from pathway databases") + (description + "Graphite provides networks derived from eight public pathway databases, +and automates the conversion of node identifiers (e.g. from Entrez IDs to gene +symbols).") + (license license:agpl3+))) |