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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-26 16:35:56 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-26 16:40:42 +0100 |
| commit | 9ac17c62421ba6239ca2654fb5c4170e8cb4749e (patch) | |
| tree | 18195303db43ac983eebf1575bb1b3618b871feb /gnu | |
| parent | 24d64989729b264ea0d8cd42149ec23b12229632 (diff) | |
| download | patches-9ac17c62421ba6239ca2654fb5c4170e8cb4749e.tar patches-9ac17c62421ba6239ca2654fb5c4170e8cb4749e.tar.gz | |
gnu: cutadapt: Update to 2.1.
* gnu/packages/bioinformatics.scm (cutadapt): Update to 2.1.
[source]: Fetch from pypi.
[native-inputs]: Add python-setuptools-scm.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 14 |
1 files changed, 6 insertions, 8 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 42c90ea949..87f15fc7f2 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2325,23 +2325,21 @@ files. The code was previously part of the cutadapt tool.") (define-public cutadapt (package (name "cutadapt") - (version "1.18") + (version "2.1") (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/marcelm/cutadapt.git") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) + (method url-fetch) + (uri (pypi-uri "cutadapt" version)) (sha256 (base32 - "08bbfwyc0kvcd95jf2s95xiv9s3cbsxm39ydl0qck3fw3cviwxpg")))) + "1vqmsfkm6llxzmsz9wcfcvzx9a9f8iabvwik2rbyn7nc4wm25z89")))) (build-system python-build-system) (inputs `(("python-dnaio" ,python-dnaio) ("python-xopen" ,python-xopen))) (native-inputs `(("python-cython" ,python-cython) - ("python-pytest" ,python-pytest))) + ("python-pytest" ,python-pytest) + ("python-setuptools-scm" ,python-setuptools-scm))) (home-page "https://cutadapt.readthedocs.io/en/stable/") (synopsis "Remove adapter sequences from nucleotide sequencing reads") (description |