summaryrefslogtreecommitdiff
path: root/gnu
diff options
context:
space:
mode:
authorRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2019-08-13 18:55:46 +0200
committerRicardo Wurmus <rekado@elephly.net>2019-08-15 14:09:13 +0200
commitd7701e1b94158c256f9b0609457cdffadaf39aee (patch)
treecb16a1ed2341f89d7b15f14639e40e797f87df10 /gnu
parent4243af4e5741add5de4972cbea1a8ee6acb39f15 (diff)
downloadpatches-d7701e1b94158c256f9b0609457cdffadaf39aee.tar
patches-d7701e1b94158c256f9b0609457cdffadaf39aee.tar.gz
gnu: Add insight-toolkit.
* gnu/packages/image-processing.scm (insight-toolkit): New variable.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/image-processing.scm63
1 files changed, 63 insertions, 0 deletions
diff --git a/gnu/packages/image-processing.scm b/gnu/packages/image-processing.scm
index 9c084e111d..2f1f0ade59 100644
--- a/gnu/packages/image-processing.scm
+++ b/gnu/packages/image-processing.scm
@@ -36,6 +36,7 @@
#:use-module (gnu packages algebra)
#:use-module (gnu packages bison)
#:use-module (gnu packages boost)
+ #:use-module (gnu packages check)
#:use-module (gnu packages compression)
#:use-module (gnu packages documentation)
#:use-module (gnu packages flex)
@@ -60,6 +61,7 @@
#:use-module (gnu packages python)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages serialization)
+ #:use-module (gnu packages tbb)
#:use-module (gnu packages tls)
#:use-module (gnu packages video)
#:use-module (gnu packages xiph)
@@ -608,3 +610,64 @@ libraries designed for computer vision research and implementation.")
`(#:configure-flags
;; Needed for itk-snap
(list "-DVNL_CONFIG_LEGACY_METHODS=ON")))))
+
+(define-public insight-toolkit
+ (package
+ (name "insight-toolkit")
+ (version "5.0.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/InsightSoftwareConsortium/ITK/"
+ "releases/download/v" version "/InsightToolkit-"
+ version ".tar.xz"))
+ (sha256
+ (base32 "0bs63mk4q8jmx38f031jy5w5n9yy5ng9x8ijwinvjyvas8cichqi"))))
+ (build-system cmake-build-system)
+ (arguments
+ `(#:tests? #f ; tests require network access and external data
+ #:configure-flags
+ '("-DITK_USE_GPU=ON"
+ "-DITK_USE_SYSTEM_LIBRARIES=ON"
+ "-DITK_USE_SYSTEM_GOOGLETEST=ON"
+ "-DITK_BUILD_SHARED=ON"
+ ;; This prevents "GTest::GTest" from being added to the ITK_LIBRARIES
+ ;; variable in the installed CMake files. This is necessary as other
+ ;; packages using insight-toolkit could not be configured otherwise.
+ "-DGTEST_ROOT=gtest")
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'do-not-tune
+ (lambda _
+ (substitute* "CMake/ITKSetStandardCompilerFlags.cmake"
+ (("-mute=native") ""))
+ #t)))))
+ (inputs
+ `(("eigen" ,eigen)
+ ("expat" ,expat)
+ ("fftw" ,fftw)
+ ("fftwf" ,fftwf)
+ ("hdf5" ,hdf5)
+ ("libjpeg" ,libjpeg)
+ ("libpng" ,libpng)
+ ("libtiff" ,libtiff)
+ ("mesa" ,mesa-opencl)
+ ("perl" ,perl)
+ ("python" ,python)
+ ("tbb" ,tbb)
+ ("vxl" ,vxl-1)
+ ("zlib" ,zlib)))
+ (native-inputs
+ `(("googletest" ,googletest)
+ ("pkg-config" ,pkg-config)))
+ (home-page "https://github.com/InsightSoftwareConsortium/ITK/")
+ (synopsis "Scientific image processing, segmentation and registration")
+ (description "The Insight Toolkit (ITK) is a toolkit for N-dimensional
+scientific image processing, segmentation, and registration. Segmentation is
+the process of identifying and classifying data found in a digitally sampled
+representation. Typically the sampled representation is an image acquired
+from such medical instrumentation as CT or MRI scanners. Registration is the
+task of aligning or developing correspondences between data. For example, in
+the medical environment, a CT scan may be aligned with a MRI scan in order to
+combine the information contained in both.")
+ (license license:asl2.0)))