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authorRicardo Wurmus <rekado@elephly.net>2018-10-25 05:16:34 +0200
committerRicardo Wurmus <rekado@elephly.net>2018-10-25 05:17:42 +0200
commit3b8a3f554811f675bc68d997476dabd8bf82ae1f (patch)
treefe90aa9a922fdd895193c4ac184f09e1bb594dd7 /gnu
parent9b3ecb60e2bb5eabaa70d0682e99e735561ce48c (diff)
downloadpatches-3b8a3f554811f675bc68d997476dabd8bf82ae1f.tar
patches-3b8a3f554811f675bc68d997476dabd8bf82ae1f.tar.gz
gnu: Add r-tmb.
* gnu/packages/cran.scm (r-tmb): New variable.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/cran.scm28
1 files changed, 28 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index a75c19a1f1..77eb389bdd 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -6455,3 +6455,31 @@ convenient functionality for users, but also a common set of functions that
can be easily used by developers working on a variety of R packages for
Bayesian modeling.")
(license license:gpl3+)))
+
+(define-public r-tmb
+ (package
+ (name "r-tmb")
+ (version "1.7.14")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "TMB" version))
+ (sha256
+ (base32
+ "0bpc504nz8xfwr8ack52dj4hpjcykn6zyf8n228z32dw9d5n96dl"))))
+ (properties `((upstream-name . "TMB")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-matrix" ,r-matrix)
+ ("r-rcppeigen" ,r-rcppeigen)))
+ (home-page "http://tmb-project.org")
+ (synopsis "Template model builder: a general random effect tool")
+ (description
+ "With this tool, a user should be able to quickly implement complex
+random effect models through simple C++ templates. The package combines
+@code{CppAD} (C++ automatic differentiation), @code{Eigen} (templated
+matrix-vector library) and @code{CHOLMOD} (sparse matrix routines available
+from R) to obtain an efficient implementation of the applied Laplace
+approximation with exact derivatives. Key features are: Automatic sparseness
+detection, parallelism through BLAS and parallel user templates.")
+ (license license:gpl2)))