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| author | Ricardo Wurmus <rekado@elephly.net> | 2018-10-04 21:15:47 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-10-05 09:21:54 +0200 |
| commit | 4ae4a15232bff0e93cbfc5d48e49a29a23a73cd6 (patch) | |
| tree | 2cf6e4715d97a825c7a322dc8eba5420d8448366 /gnu | |
| parent | bd5f5eece9fc208de01190cd25dce9c281acddd6 (diff) | |
| download | patches-4ae4a15232bff0e93cbfc5d48e49a29a23a73cd6.tar patches-4ae4a15232bff0e93cbfc5d48e49a29a23a73cd6.tar.gz | |
gnu: samtools: Update to 1.9.
* gnu/packages/bioinformatics.scm (samtools): Update to 1.9.
[origin]: Remove bundled htslib sources.
[arguments]: Remove obsolete make-flags.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 12 |
1 files changed, 8 insertions, 4 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 64d7e1c869..996e3731f3 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4997,7 +4997,7 @@ to the user's query of interest.") (define-public samtools (package (name "samtools") - (version "1.8") + (version "1.9") (source (origin (method url-fetch) @@ -5006,15 +5006,19 @@ to the user's query of interest.") version "/samtools-" version ".tar.bz2")) (sha256 (base32 - "05myg7bs90i68qbqab9cdg9rqj2xh39azibrx82ipzc5kcfvqhn9")))) + "10ilqbmm7ri8z431sn90lvbjwizd0hhkf9rcqw8j823hf26nhgq8")) + (modules '((guix build utils))) + (snippet '(begin + ;; Delete bundled htslib. + (delete-file-recursively "htslib-1.9") + #t)))) (build-system gnu-build-system) (arguments `(#:modules ((ice-9 ftw) (ice-9 regex) (guix build gnu-build-system) (guix build utils)) - #:make-flags (list (string-append "prefix=" (assoc-ref %outputs "out"))) - #:configure-flags (list "--with-ncurses" "--with-htslib=system") + #:configure-flags (list "--with-ncurses") #:phases (modify-phases %standard-phases (add-after 'unpack 'patch-tests |