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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-04-19 14:44:10 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-04-19 15:38:47 +0200 |
| commit | 296da6e624633f4e049244e72647ceff535a6cc0 (patch) | |
| tree | 4598ea7b6130c4d37c0343c59c4411da5c577fb7 /gnu | |
| parent | 9b86fea05f223a3215e19cccc75d3504f707a1c2 (diff) | |
| download | patches-296da6e624633f4e049244e72647ceff535a6cc0.tar patches-296da6e624633f4e049244e72647ceff535a6cc0.tar.gz | |
gnu: r-seurat: Update to 3.0.0.
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.0.0.
[propagated-inputs]: Remove r-dosnow, r-dplyr, r-dtw, r-foreach, r-fpc,
r-gplots, r-hdf5r, r-hmisc, r-httr, r-lars, r-mixtools, r-reshape2, and
r-tidyr; add r-future, r-future-apply, r-ggrepel, r-kernsmooth, r-rlang,
r-rsvd, r-scales, and r-sctransform.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 25 |
1 files changed, 10 insertions, 15 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index dc5d84653c..4cf6900498 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -9438,40 +9438,33 @@ and irregular enzymatic cleavages, mass measurement accuracy, etc.") (define-public r-seurat (package (name "r-seurat") - (version "2.3.4") + (version "3.0.0") (source (origin (method url-fetch) (uri (cran-uri "Seurat" version)) (sha256 (base32 - "0l8bv4i9nzz26mirnva10mq6pimibj24vk7vpvfypgn7xk4942hd")))) + "183lm2wk0i3g114jbdf7pb4ssizr48qzqv3cknbsiackr8kvpsvc")))) (properties `((upstream-name . "Seurat"))) (build-system r-build-system) (propagated-inputs `(("r-ape" ,r-ape) ("r-cluster" ,r-cluster) ("r-cowplot" ,r-cowplot) - ("r-dosnow" ,r-dosnow) - ("r-dplyr" ,r-dplyr) - ("r-dtw" ,r-dtw) ("r-fitdistrplus" ,r-fitdistrplus) - ("r-foreach" ,r-foreach) - ("r-fpc" ,r-fpc) + ("r-future" ,r-future) + ("r-future-apply" ,r-future-apply) ("r-ggplot2" ,r-ggplot2) + ("r-ggrepel" ,r-ggrepel) ("r-ggridges" ,r-ggridges) - ("r-gplots" ,r-gplots) - ("r-hdf5r" ,r-hdf5r) - ("r-hmisc" ,r-hmisc) - ("r-httr" ,r-httr) ("r-ica" ,r-ica) ("r-igraph" ,r-igraph) ("r-irlba" ,r-irlba) - ("r-lars" ,r-lars) + ("r-kernsmooth" ,r-kernsmooth) ("r-lmtest" ,r-lmtest) ("r-mass" ,r-mass) ("r-matrix" ,r-matrix) ("r-metap" ,r-metap) - ("r-mixtools" ,r-mixtools) ("r-pbapply" ,r-pbapply) ("r-plotly" ,r-plotly) ("r-png" ,r-png) @@ -9480,12 +9473,14 @@ and irregular enzymatic cleavages, mass measurement accuracy, etc.") ("r-rcpp" ,r-rcpp) ("r-rcppeigen" ,r-rcppeigen) ("r-rcppprogress" ,r-rcppprogress) - ("r-reshape2" ,r-reshape2) ("r-reticulate" ,r-reticulate) + ("r-rlang" ,r-rlang) ("r-rocr" ,r-rocr) + ("r-rsvd" ,r-rsvd) ("r-rtsne" ,r-rtsne) + ("r-scales" ,r-scales) + ("r-sctransform" ,r-sctransform) ("r-sdmtools" ,r-sdmtools) - ("r-tidyr" ,r-tidyr) ("r-tsne" ,r-tsne))) (home-page "http://www.satijalab.org/seurat") (synopsis "Seurat is an R toolkit for single cell genomics") |