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| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2017-11-27 16:21:54 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2017-11-30 17:38:36 +0100 |
| commit | 117d8cc40e9983098a080fe41cce7684b312351c (patch) | |
| tree | ea716cba453370b5dd6de893930c7e7c63999d43 /gnu | |
| parent | f1b90a2b58aca0875ebfff78434478ea4b580c30 (diff) | |
| download | patches-117d8cc40e9983098a080fe41cce7684b312351c.tar patches-117d8cc40e9983098a080fe41cce7684b312351c.tar.gz | |
gnu: jellyfish: Update to 2.2.7.
* gnu/packages/bioinformatics.scm (jellyfish): Update to 2.2.7.
[native-inputs]: Add pkg-config.
[inputs]: Add htslib.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 9 |
1 files changed, 6 insertions, 3 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 03054c91d1..5b3eec86db 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3292,7 +3292,7 @@ experiments and provide highly stable thresholds based on reproducibility.") (define-public jellyfish (package (name "jellyfish") - (version "2.2.4") + (version "2.2.7") (source (origin (method url-fetch) (uri (string-append "https://github.com/gmarcais/Jellyfish/" @@ -3300,7 +3300,7 @@ experiments and provide highly stable thresholds based on reproducibility.") "/jellyfish-" version ".tar.gz")) (sha256 (base32 - "0a6xnynqy2ibfbfz86b9g2m2dgm7f1469pmymkpam333gi3p26nk")))) + "1a1iwq9pq54k2m9ypvwl5s0bqfl64gwh9dx5af9i382ajas2016q")))) (build-system gnu-build-system) (outputs '("out" ;for library "ruby" ;for Ruby bindings @@ -3323,7 +3323,10 @@ experiments and provide highly stable thresholds based on reproducibility.") `(("bc" ,bc) ("time" ,time) ("ruby" ,ruby) - ("python" ,python-2))) + ("python" ,python-2) + ("pkg-config" ,pkg-config))) + (inputs + `(("htslib" ,htslib))) (synopsis "Tool for fast counting of k-mers in DNA") (description "Jellyfish is a tool for fast, memory-efficient counting of k-mers in |