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| author | Ricardo Wurmus <rekado@elephly.net> | 2018-10-21 21:26:35 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-10-21 23:06:46 +0200 |
| commit | 38622ccd14c5d2df152ff8d72f1f5269afb36565 (patch) | |
| tree | 29f2e38904934a6b98eaf12b8c62609869c89e13 /gnu | |
| parent | c96ca68f31619ed678720fc1dc6bbf0906ce5638 (diff) | |
| download | patches-38622ccd14c5d2df152ff8d72f1f5269afb36565.tar patches-38622ccd14c5d2df152ff8d72f1f5269afb36565.tar.gz | |
gnu: express-beta-diversity: Update to 1.0.8.
* gnu/packages/bioinformatics.scm (express-beta-diversity): Update to 1.0.8.
[source]: Fetch from git.
[arguments]: Use INVOKE; remove "exit-source" build phase; simplify.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 31 |
1 files changed, 13 insertions, 18 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index a806fd5f22..9a04118588 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2481,17 +2481,16 @@ ChIP-Seq, and analysis of metagenomic data.") (define-public express-beta-diversity (package (name "express-beta-diversity") - (version "1.0.7") + (version "1.0.8") (source (origin - (method url-fetch) - (uri - (string-append - "https://github.com/dparks1134/ExpressBetaDiversity/archive/v" - version ".tar.gz")) - (file-name (string-append name "-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/dparks1134/ExpressBetaDiversity.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) (sha256 (base32 - "1djvdlmqvjf6h0zq7w36y8cl5cli6rgj86x65znl48agnwmzxfxr")))) + "0s0yzg5c21349rh7x4w9266jsvnp7j1hp9cf8sk32hz8nvrj745x")))) (build-system gnu-build-system) (arguments `(#:phases @@ -2499,17 +2498,13 @@ ChIP-Seq, and analysis of metagenomic data.") (delete 'configure) (add-before 'build 'enter-source (lambda _ (chdir "source") #t)) (replace 'check - (lambda _ (zero? (system* "../bin/ExpressBetaDiversity" - "-u")))) - (add-after 'check 'exit-source (lambda _ (chdir "..") #t)) + (lambda _ (invoke "../bin/ExpressBetaDiversity" "-u") #t)) (replace 'install - (lambda* (#:key outputs #:allow-other-keys) - (let ((bin (string-append (assoc-ref outputs "out") - "/bin"))) - (mkdir-p bin) - (install-file "scripts/convertToEBD.py" bin) - (install-file "bin/ExpressBetaDiversity" bin) - #t)))))) + (lambda* (#:key outputs #:allow-other-keys) + (let ((bin (string-append (assoc-ref outputs "out") "/bin"))) + (install-file "../scripts/convertToEBD.py" bin) + (install-file "../bin/ExpressBetaDiversity" bin) + #t)))))) (inputs `(("python" ,python-2))) (home-page "http://kiwi.cs.dal.ca/Software/ExpressBetaDiversity") |