diff options
| author | Marius Bakke <mbakke@fastmail.com> | 2016-11-30 18:24:32 +0100 |
|---|---|---|
| committer | Marius Bakke <mbakke@fastmail.com> | 2016-11-30 18:24:32 +0100 |
| commit | 8a7cbc882a75d7f9f1fe960552dea47acf347b0a (patch) | |
| tree | ded8c9116d357b38fd23b8c0cc312863fe68c9b5 /gnu | |
| parent | 3084a9908434e4e7123d2fd3881c798977abedb9 (diff) | |
| parent | 72f0c5ea3c0272a93436ad3c04a281d1237a9593 (diff) | |
| download | patches-8a7cbc882a75d7f9f1fe960552dea47acf347b0a.tar patches-8a7cbc882a75d7f9f1fe960552dea47acf347b0a.tar.gz | |
Merge branch 'master' into staging
Diffstat (limited to 'gnu')
108 files changed, 6272 insertions, 2760 deletions
diff --git a/gnu/build/file-systems.scm b/gnu/build/file-systems.scm index 0d55e91978..431b287d0c 100644 --- a/gnu/build/file-systems.scm +++ b/gnu/build/file-systems.scm @@ -464,6 +464,27 @@ form: DEVICE, MOUNT-POINT, and TYPE must be strings; OPTIONS can be a string or #f; FLAGS must be a list of symbols. CHECK? is a Boolean indicating whether to run a file system check." + + (define (mount-nfs source mount-point type flags options) + (let* ((idx (string-rindex source #\:)) + (host-part (string-take source idx)) + ;; Strip [] from around host if present + (host (match (string-split host-part (string->char-set "[]")) + (("" h "") h) + ((h) h))) + (aa (match (getaddrinfo host "nfs") ((x . _) x))) + (sa (addrinfo:addr aa)) + (inet-addr (inet-ntop (sockaddr:fam sa) + (sockaddr:addr sa)))) + + ;; Mounting an NFS file system requires passing the address + ;; of the server in the addr= option + (mount source mount-point type flags + (string-append "addr=" + inet-addr + (if options + (string-append "," options) + ""))))) (match spec ((source title mount-point type (flags ...) options check?) (let ((source (canonicalize-device-spec source title)) @@ -481,7 +502,11 @@ run a file system check." (call-with-output-file mount-point (const #t))) (mkdir-p mount-point)) - (mount source mount-point type flags options) + (cond + ((string-prefix? "nfs" type) + (mount-nfs source mount-point type flags options)) + (else + (mount source mount-point type flags options))) ;; For read-only bind mounts, an extra remount is needed, as per ;; <http://lwn.net/Articles/281157/>, which still applies to Linux 4.0. diff --git a/gnu/build/install.scm b/gnu/build/install.scm index 3d1594e203..5c2b35632d 100644 --- a/gnu/build/install.scm +++ b/gnu/build/install.scm @@ -46,6 +46,11 @@ Note that the caller must make sure that GRUB.CFG is registered as a GC root so that the fonts, background images, etc. referred to by GRUB.CFG are not GC'd." (install-grub-config grub.cfg mount-point) + + ;; Tell 'grub-install' that there might be a LUKS-encrypted /boot or root + ;; partition. + (setenv "GRUB_ENABLE_CRYPTODISK" "y") + (unless (zero? (system* "grub-install" "--no-floppy" "--boot-directory" (string-append mount-point "/boot") diff --git a/gnu/build/marionette.scm b/gnu/build/marionette.scm index d36e1c8d09..506d6da420 100644 --- a/gnu/build/marionette.scm +++ b/gnu/build/marionette.scm @@ -21,10 +21,13 @@ #:use-module (srfi srfi-26) #:use-module (rnrs io ports) #:use-module (ice-9 match) + #:use-module (ice-9 popen) #:export (marionette? make-marionette marionette-eval marionette-control + marionette-screen-text + wait-for-screen-text %qwerty-us-keystrokes marionette-type)) @@ -45,7 +48,10 @@ (command marionette-command) ;list of strings (pid marionette-pid) ;integer (monitor marionette-monitor) ;port - (repl marionette-repl)) ;port + (repl %marionette-repl)) ;promise of a port + +(define-syntax-rule (marionette-repl marionette) + (force (%marionette-repl marionette))) (define* (wait-for-monitor-prompt port #:key (quiet? #t)) "Read from PORT until we have seen all of QEMU's monitor prompt. When @@ -131,21 +137,29 @@ QEMU monitor and to the guest's backdoor REPL." (close-port monitor) (wait-for-monitor-prompt monitor-conn) (display "read QEMU monitor prompt\n") - (match (accept* repl) - ((repl-conn . addr) - (display "connected to guest REPL\n") - (close-port repl) - (match (read repl-conn) - ('ready - (alarm 0) - (display "marionette is ready\n") - (marionette (append command extra-options) pid - monitor-conn repl-conn))))))))))) + + (marionette (append command extra-options) pid + monitor-conn + + ;; The following 'accept' call connects immediately, but + ;; we don't know whether the guest has connected until + ;; we actually receive the 'ready' message. + (match (accept* repl) + ((repl-conn . addr) + (display "connected to guest REPL\n") + (close-port repl) + ;; Delay reception of the 'ready' message so that the + ;; caller can already send monitor commands. + (delay + (match (read repl-conn) + ('ready + (display "marionette is ready\n") + repl-conn)))))))))))) (define (marionette-eval exp marionette) "Evaluate EXP in MARIONETTE's backdoor REPL. Return the result." (match marionette - (($ <marionette> command pid monitor repl) + (($ <marionette> command pid monitor (= force repl)) (write exp repl) (newline repl) (read repl)))) @@ -160,6 +174,55 @@ pcsys_monitor\")." (newline monitor) (wait-for-monitor-prompt monitor)))) +(define* (marionette-screen-text marionette + #:key + (ocrad "ocrad")) + "Take a screenshot of MARIONETTE, perform optical character +recognition (OCR), and return the text read from the screen as a string. Do +this by invoking OCRAD (file name for GNU Ocrad's command)" + (define (random-file-name) + (string-append "/tmp/marionette-screenshot-" + (number->string (random (expt 2 32)) 16) + ".ppm")) + + (let ((image (random-file-name))) + (dynamic-wind + (const #t) + (lambda () + (marionette-control (string-append "screendump " image) + marionette) + + ;; Tell Ocrad to invert the image colors (make it black on white) and + ;; to scale the image up, which significantly improves the quality of + ;; the result. In spite of this, be aware that OCR confuses "y" and + ;; "V" and sometimes erroneously introduces white space. + (let* ((pipe (open-pipe* OPEN_READ ocrad + "-i" "-s" "10" image)) + (text (get-string-all pipe))) + (unless (zero? (close-pipe pipe)) + (error "'ocrad' failed" ocrad)) + text)) + (lambda () + (false-if-exception (delete-file image)))))) + +(define* (wait-for-screen-text marionette predicate + #:key (timeout 30) (ocrad "ocrad")) + "Wait for TIMEOUT seconds or until the screen text on MARIONETTE matches +PREDICATE, whichever comes first. Raise an error when TIMEOUT is exceeded." + (define start + (car (gettimeofday))) + + (define end + (+ start timeout)) + + (let loop () + (if (> (car (gettimeofday)) end) + (error "'wait-for-screen-text' timeout" predicate) + (or (predicate (marionette-screen-text marionette #:ocrad ocrad)) + (begin + (sleep 1) + (loop)))))) + (define %qwerty-us-keystrokes ;; Maps "special" characters to their keystrokes. '((#\newline . "ret") diff --git a/gnu/build/vm.scm b/gnu/build/vm.scm index cc5cf45362..60ee18ebe0 100644 --- a/gnu/build/vm.scm +++ b/gnu/build/vm.scm @@ -79,12 +79,9 @@ it via /dev/hda. REFERENCES-GRAPHS can specify a list of reference-graph files as produced by the #:references-graphs parameter of 'derivation'." - (define image-file - (string-append "image." disk-image-format)) - (when make-disk-image? (unless (zero? (system* "qemu-img" "create" "-f" disk-image-format - image-file + output (number->string disk-image-size))) (error "qemu-img failed"))) @@ -115,7 +112,7 @@ the #:references-graphs parameter of 'derivation'." builder) (append (if make-disk-image? - `("-drive" ,(string-append "file=" image-file + `("-drive" ,(string-append "file=" output ",if=virtio")) '()) ;; Only enable kvm if we see /dev/kvm exists. @@ -126,11 +123,10 @@ the #:references-graphs parameter of 'derivation'." '())))) (error "qemu failed" qemu)) - (if make-disk-image? - (copy-file image-file output) - (begin - (mkdir output) - (copy-recursively "xchg" output)))) + ;; When MAKE-DISK-IMAGE? is true, the image is in OUTPUT already. + (unless make-disk-image? + (mkdir output) + (copy-recursively "xchg" output))) ;;; diff --git a/gnu/local.mk b/gnu/local.mk index 0d274d39e5..146cdc4490 100644 --- a/gnu/local.mk +++ b/gnu/local.mk @@ -187,6 +187,7 @@ GNU_SYSTEM_MODULES = \ %D%/packages/icu4c.scm \ %D%/packages/idutils.scm \ %D%/packages/image.scm \ + %D%/packages/image-viewers.scm \ %D%/packages/imagemagick.scm \ %D%/packages/indent.scm \ %D%/packages/inklingreader.scm \ @@ -294,6 +295,7 @@ GNU_SYSTEM_MODULES = \ %D%/packages/pdf.scm \ %D%/packages/pem.scm \ %D%/packages/perl.scm \ + %D%/packages/perl-web.scm \ %D%/packages/photo.scm \ %D%/packages/php.scm \ %D%/packages/pkg-config.scm \ @@ -305,7 +307,6 @@ GNU_SYSTEM_MODULES = \ %D%/packages/pumpio.scm \ %D%/packages/pretty-print.scm \ %D%/packages/protobuf.scm \ - %D%/packages/psyc.scm \ %D%/packages/pv.scm \ %D%/packages/python.scm \ %D%/packages/qemu.scm \ @@ -400,6 +401,8 @@ GNU_SYSTEM_MODULES = \ %D%/services/admin.scm \ %D%/services/avahi.scm \ %D%/services/base.scm \ + %D%/services/configuration.scm \ + %D%/services/cuirass.scm \ %D%/services/cups.scm \ %D%/services/databases.scm \ %D%/services/dbus.scm \ @@ -447,6 +450,7 @@ GNU_SYSTEM_MODULES = \ %D%/tests.scm \ %D%/tests/base.scm \ %D%/tests/install.scm \ + %D%/tests/mail.scm \ %D%/tests/ssh.scm @@ -486,6 +490,7 @@ dist_patch_DATA = \ %D%/packages/patches/binutils-loongson-workaround.patch \ %D%/packages/patches/binutils-mips-bash-bug.patch \ %D%/packages/patches/byobu-writable-status.patch \ + %D%/packages/patches/cairo-CVE-2016-9082.patch \ %D%/packages/patches/calibre-drop-unrar.patch \ %D%/packages/patches/calibre-no-updates-dialog.patch \ %D%/packages/patches/cdparanoia-fpic.patch \ @@ -506,6 +511,7 @@ dist_patch_DATA = \ %D%/packages/patches/cssc-missing-include.patch \ %D%/packages/patches/clucene-contribs-lib.patch \ %D%/packages/patches/cursynth-wave-rand.patch \ + %D%/packages/patches/cyrus-sasl-CVE-2013-4122.patch \ %D%/packages/patches/dbus-helper-search-path.patch \ %D%/packages/patches/devil-CVE-2009-3994.patch \ %D%/packages/patches/devil-fix-libpng.patch \ @@ -551,6 +557,7 @@ dist_patch_DATA = \ %D%/packages/patches/gcc-5.0-libvtv-runpath.patch \ %D%/packages/patches/gcc-6-arm-none-eabi-multilib.patch \ %D%/packages/patches/gcc-6-cross-environment-variables.patch \ + %D%/packages/patches/gcj-arm-mode.patch \ %D%/packages/patches/gd-CVE-2016-7568.patch \ %D%/packages/patches/gd-CVE-2016-8670.patch \ %D%/packages/patches/gd-fix-chunk-size-on-boundaries.patch \ @@ -585,6 +592,10 @@ dist_patch_DATA = \ %D%/packages/patches/grub-gets-undeclared.patch \ %D%/packages/patches/grub-freetype.patch \ %D%/packages/patches/gsl-test-i686.patch \ + %D%/packages/patches/gst-plugins-good-fix-crashes.patch \ + %D%/packages/patches/gst-plugins-good-fix-invalid-read.patch \ + %D%/packages/patches/gst-plugins-good-fix-signedness.patch \ + %D%/packages/patches/gst-plugins-good-flic-bounds-check.patch \ %D%/packages/patches/guile-1.8-cpp-4.5.patch \ %D%/packages/patches/guile-arm-fixes.patch \ %D%/packages/patches/guile-default-utf8.patch \ @@ -800,6 +811,7 @@ dist_patch_DATA = \ %D%/packages/patches/pyqt-configure.patch \ %D%/packages/patches/python-2-deterministic-build-info.patch \ %D%/packages/patches/python-2.7-search-paths.patch \ + %D%/packages/patches/python-2.7-site-prefixes.patch \ %D%/packages/patches/python-2.7-source-date-epoch.patch \ %D%/packages/patches/python-3-deterministic-build-info.patch \ %D%/packages/patches/python-3-search-paths.patch \ @@ -809,7 +821,6 @@ dist_patch_DATA = \ %D%/packages/patches/python-file-double-encoding-bug.patch \ %D%/packages/patches/python-fix-tests.patch \ %D%/packages/patches/python-parse-too-many-fields.patch \ - %D%/packages/patches/python-rarfile-fix-tests.patch \ %D%/packages/patches/python2-rdflib-drop-sparqlwrapper.patch \ %D%/packages/patches/python-statsmodels-fix-tests.patch \ %D%/packages/patches/python-configobj-setuptools.patch \ diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm index 5adde6cc4a..f1c283c7c2 100644 --- a/gnu/packages/admin.scm +++ b/gnu/packages/admin.scm @@ -1332,8 +1332,6 @@ specified directories.") (("/usr") out) (("distro_ver = .*") "distro_ver = ''")) #t)))))) - (inputs - `(("python-setuptools" ,python2-setuptools))) (home-page "https://github.com/shawn-sterling/graphios") (synopsis "Emit Nagios metrics to Graphite, Statsd, and Librato") (description @@ -1356,8 +1354,7 @@ of supported upstream metrics systems simultaneously.") "1bfc2xiplpad6f2nwi48y0kps7xqnsll85dlz63cy8k5bysl6d20")))) (build-system python-build-system) (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ("python2-pycrypto" ,python2-pycrypto) + `(("python2-pycrypto" ,python2-pycrypto) ("python2-httplib2" ,python2-httplib2) ("python2-passlib" ,python2-passlib) ("python2-nose" ,python2-nose) @@ -1699,13 +1696,15 @@ throughput (in the same interval).") (base32 "04q2cn8c83f6z6wn1scla1ilrpi5ssjc64987hvmwfvwvb82bvkp")))) (build-system python-build-system) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (inputs `(("python-colorama" ,python-colorama) ("python-decorator" ,python-decorator) ("python-psutil" ,python-psutil) ("python-six" ,python-six))) + (inputs + ;; Requires setuptools >= 17.1 due to some features used, while our + ;; python currently only includes 12.0. TODO: Remove this input. + `(("python-setuptools" ,python-setuptools))) (home-page "https://github.com/nvbn/thefuck") (synopsis "Correct mistyped console command") (description diff --git a/gnu/packages/algebra.scm b/gnu/packages/algebra.scm index cd212d4642..8e3327eafe 100644 --- a/gnu/packages/algebra.scm +++ b/gnu/packages/algebra.scm @@ -577,6 +577,22 @@ cosine/ sine transforms or DCT/DST).") (string-append (package-description fftw) " Single-precision version.")))) +;; FIXME: These packages are used temporarily by packages like Ardour until +;; "--enable-flags" is added to the fftw and fftwf packages. +(define-public fftw-with-threads + (package (inherit fftw) + (arguments + (substitute-keyword-arguments (package-arguments fftw) + ((#:configure-flags flags) + `(cons "--enable-threads" ,flags)))))) + +(define-public fftwf-with-threads + (package (inherit fftwf) + (arguments + (substitute-keyword-arguments (package-arguments fftwf) + ((#:configure-flags flags) + `(cons "--enable-threads" ,flags)))))) + (define-public fftw-openmpi (package (inherit fftw) (name "fftw-openmpi") diff --git a/gnu/packages/aspell.scm b/gnu/packages/aspell.scm index b3ca380533..04a9197839 100644 --- a/gnu/packages/aspell.scm +++ b/gnu/packages/aspell.scm @@ -108,10 +108,10 @@ dictionaries, including personal ones.") (define-public aspell-dict-en (aspell-dictionary "en" "English" - #:version "2016.01.19-0" + #:version "2016.11.20-0" #:sha256 (base32 - "01h4cl4lngp6mcfbyb47cjrc2gspyg2519dvknd97ki896nx7vcn"))) + "1496jnhh2jvhkzcj0p4vy89bcs4g5wz6a76m33vw4dhchn5xm9jw"))) (define-public aspell-dict-eo (aspell-dictionary "eo" "Esperanto" diff --git a/gnu/packages/audio.scm b/gnu/packages/audio.scm index 492f716ca9..2012053141 100644 --- a/gnu/packages/audio.scm +++ b/gnu/packages/audio.scm @@ -8,6 +8,7 @@ ;;; Copyright © 2016 Alex Griffin <a@ajgrf.com> ;;; Copyright © 2016 ng0 <ng0@we.make.ritual.n0.is> ;;; Copyright © 2016 Lukas Gradl <lgradl@openmailbox.org> +;;; Copyright © 2016 Tobias Geerinckx-Rice <me@tobias.gr> ;;; ;;; This file is part of GNU Guix. ;;; @@ -237,8 +238,8 @@ namespace ARDOUR { const char* revision = \"5.4\" ; }")))) ("lv2" ,lv2) ("vamp" ,vamp) ("curl" ,curl) - ("fftw" ,fftw) - ("fftwf" ,fftwf) + ("fftw" ,fftw-with-threads) + ("fftwf" ,fftwf-with-threads) ("jack" ,jack-1) ("serd" ,serd) ("sord" ,sord) @@ -1177,19 +1178,24 @@ well suited to all musical instruments and vocals.") (version "1.3.2") (source (origin (method url-fetch) - (uri (string-append - "http://factorial.hu/system/files/ir.lv2-" - version ".tar.gz")) + ;; The original home-page is gone. Download the tarball from an + ;; archive mirror instead. + (uri (list (string-append + "https://web.archive.org/web/20150803095032/" + "http://factorial.hu/system/files/ir.lv2-" + version ".tar.gz") + (string-append + "https://mirrors.kernel.org/gentoo/distfiles/ir.lv2-" + version ".tar.gz"))) (sha256 (base32 "1jh2z01l9m4ar7yz0n911df07dygc7n4cl59p7qdjbh0nvkm747g")))) (build-system gnu-build-system) (arguments - `(#:tests? #f ;no "check" target + `(#:tests? #f ; no tests #:make-flags (list (string-append "PREFIX=" (assoc-ref %outputs "out"))) - #:phases - ;; no configure script - (alist-delete 'configure %standard-phases))) + #:phases (modify-phases %standard-phases + (delete 'configure)))) ; no configure script (inputs `(("libsndfile" ,libsndfile) ("libsamplerate" ,libsamplerate) @@ -1203,7 +1209,9 @@ well suited to all musical instruments and vocals.") (list (search-path-specification (variable "LV2_PATH") (files '("lib/lv2"))))) - (home-page "http://factorial.hu/plugins/lv2/ir") + ;; Link to an archived copy of the home-page since the original is gone. + (home-page (string-append "https://web.archive.org/web/20150803095032/" + "http://factorial.hu/plugins/lv2/ir")) (synopsis "LV2 convolution reverb") (description "IR is a low-latency, real-time, high performance signal convolver @@ -1485,9 +1493,10 @@ implementation of the Open Sound Control (OSC) protocol.") "13vry6xhxm7adnbyj28w1kpwrh0kf7nw83cz1yq74wl21faz2rzw")))) (build-system python-build-system) (arguments `(#:tests? #f)) ;no tests + (native-inputs + `(("python-cython" ,python-cython))) (inputs - `(("python-cython" ,python-cython) - ("liblo" ,liblo))) + `(("liblo" ,liblo))) (home-page "http://das.nasophon.de/pyliblo/") (synopsis "Python bindings for liblo") (description @@ -1543,15 +1552,14 @@ significantly faster and have minimal dependencies.") (define-public lv2 (package (name "lv2") - (version "1.12.0") + (version "1.14.0") (source (origin (method url-fetch) (uri (string-append "http://lv2plug.in/spec/lv2-" - version - ".tar.bz2")) + version ".tar.bz2")) (sha256 (base32 - "1saq0vwqy5zjdkgc5ahs8kcabxfmff2mmg68fiqrkv8hiw9m6jks")))) + "0chxwys3vnn3nxc9x2vchm74s9sx0vfra6y893byy12ci61jc1dq")))) (build-system waf-build-system) (arguments `(#:tests? #f ; no check target diff --git a/gnu/packages/backup.scm b/gnu/packages/backup.scm index 203ff4c9dc..a503b06603 100644 --- a/gnu/packages/backup.scm +++ b/gnu/packages/backup.scm @@ -66,8 +66,7 @@ "duplicity-test_selection-tmp.patch")))) (build-system python-build-system) (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ("util-linux" ,util-linux))) ;setsid command, for the tests + `(("util-linux" ,util-linux))) ;setsid command, for the tests (inputs `(("python" ,python-2) ("librsync" ,librsync) @@ -339,8 +338,6 @@ errors.") (base32 "1nwmmh816f96h0ff1jxk95ad38ilbhbdl5dgibx1d4cl81dsi48d")))) (build-system python-build-system) - (native-inputs - `(("python2-setuptools" ,python2-setuptools))) (inputs `(("python" ,python-2) ("librsync" ,librsync))) @@ -438,7 +435,9 @@ detection, and lossless compression.") ;; The tests need to be run after Borg is installed. (delete 'check) (add-after 'install 'check - (lambda _ + (lambda* (#:key inputs outputs #:allow-other-keys) + ;; Make the installed package available for the test suite. + (add-installed-pythonpath inputs outputs) (zero? (system* "py.test" "-v" "--pyargs" "borg.testsuite" "-k" (string-append @@ -451,7 +450,13 @@ detection, and lossless compression.") "and not test_default_acl " "and not test_non_ascii_acl " ;; This test needs the unpackaged pytest-benchmark. - "and not benchmark"))))) + "and not benchmark " + ;; These tests assume the kernel supports FUSE. They + ;; were skipped using the "old" Python build system, + ;; before commit + ;; 7db40bce58e149ecb541d295e01cfbfe953d39a3. + "and not test_fuse " + "and not test_fuse_allow_damaged_files"))))) (add-after 'install 'install-doc (lambda* (#:key outputs #:allow-other-keys) (let* ((out (assoc-ref outputs "out")) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 773b5909b6..415024fadc 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -50,6 +50,7 @@ #:use-module (gnu packages documentation) #:use-module (gnu packages datastructures) #:use-module (gnu packages file) + #:use-module (gnu packages flex) #:use-module (gnu packages gawk) #:use-module (gnu packages gcc) #:use-module (gnu packages gd) @@ -215,8 +216,7 @@ structure of the predicted RNA.") ("libtool" ,libtool) ("zlib" ,zlib) ("python-nose" ,python2-nose) - ("python-pysam" ,python2-pysam) - ("python-setuptools" ,python2-setuptools))) + ("python-pysam" ,python2-pysam))) (inputs `(("htslib" ,htslib) ("samtools" ,samtools) @@ -523,15 +523,14 @@ intended to behave exactly the same as the original BWK awk.") (build-system python-build-system) (arguments `(#:python ,python-2)) ; no Python 3 support (inputs - `(("python-cython" ,python2-cython) - ("python-matplotlib" ,python2-matplotlib))) + `(("python-matplotlib" ,python2-matplotlib))) (propagated-inputs `(("bedtools" ,bedtools) ("samtools" ,samtools))) (native-inputs - `(("python-pyyaml" ,python2-pyyaml) - ("python-nose" ,python2-nose) - ("python-setuptools" ,python2-setuptools))) + `(("python-cython" ,python2-cython) + ("python-pyyaml" ,python2-pyyaml) + ("python-nose" ,python2-nose))) (home-page "https://pythonhosted.org/pybedtools/") (synopsis "Python wrapper for BEDtools programs") (description @@ -586,9 +585,7 @@ e.g. microbiome samples, genomes, metagenomes.") (substitute* "setup.py" (("install_requires.append\\(\"pyqi\"\\)") "pass")) #t))) - ,@(package-arguments base))) - (native-inputs `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + ,@(package-arguments base)))))) (define-public bioperl-minimal (let* ((inputs `(("perl-module-build" ,perl-module-build) @@ -673,7 +670,7 @@ provide a coordinated and extensible framework to do computational biology.") (add-before 'check 'set-home ;; Some tests require a home directory to be set. (lambda _ (setenv "HOME" "/tmp") #t))))) - (inputs + (propagated-inputs `(("python-numpy" ,python-numpy))) (home-page "http://biopython.org/") (synopsis "Tools for biological computation in Python") @@ -684,15 +681,10 @@ bioinformatics programs; a standard sequence class and tools for performing common operations on them; code to perform data classification; code for dealing with alignments; code making it easy to split up parallelizable tasks into separate processes; and more.") - (license (license:non-copyleft "http://www.biopython.org/DIST/LICENSE")) - (properties `((python2-variant . ,(delay python2-biopython)))))) + (license (license:non-copyleft "http://www.biopython.org/DIST/LICENSE")))) (define-public python2-biopython - (let ((base (package-with-python2 (strip-python2-variant python-biopython)))) - (package - (inherit base) - (native-inputs `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-biopython)) ;; An outdated version of biopython is required for seqmagick, see ;; https://github.com/fhcrc/seqmagick/issues/59 @@ -1339,8 +1331,7 @@ well as many of the command line options.") `(("python-numpy" ,python2-numpy) ("zlib" ,zlib))) (native-inputs - `(("python-nose" ,python2-nose) - ("python-setuptools" ,python2-setuptools))) + `(("python-nose" ,python2-nose))) (home-page "http://bitbucket.org/james_taylor/bx-python/") (synopsis "Tools for manipulating biological data") (description @@ -1404,7 +1395,6 @@ multiple sequence alignments.") ("zlib" ,zlib))) (native-inputs `(("python-cython" ,python-cython) - ("python-setuptools" ,python-setuptools) ;; Dependencies below are are for tests only. ("samtools" ,samtools) ("bcftools" ,bcftools) @@ -1430,7 +1420,6 @@ also includes an interface for tabix.") (sha256 (base32 "1q8wnj2kga9nz1lwc4w7qv52smfm536hp6mc8w6s53lhyj0mpi22")))) - (properties `((python2-variant . ,(delay python2-twobitreader)))) (build-system python-build-system) (arguments '(;; Tests are not distributed in the PyPi release. @@ -1447,11 +1436,7 @@ UCSC genome browser.") (license license:artistic2.0))) (define-public python2-twobitreader - (let ((base (package-with-python2 (strip-python2-variant python-twobitreader)))) - (package - (inherit base) - (native-inputs `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-twobitreader)) (define-public python-plastid (package @@ -1463,7 +1448,6 @@ UCSC genome browser.") (sha256 (base32 "1sqkz5d3b9kf688mp7k771c87ins42j7j0whmkb49cb3fsg8s8lj")))) - (properties `((python2-variant . ,(delay python2-plastid)))) (build-system python-build-system) (arguments ;; Some test files are not included. @@ -1488,12 +1472,7 @@ high-throughput sequencing data – with an emphasis on simplicity.") (license license:bsd-3))) (define-public python2-plastid - (let ((base (package-with-python2 (strip-python2-variant python-plastid)))) - (package - (inherit base) - ;; setuptools is required at runtime - (propagated-inputs `(("python2-setuptools" ,python2-setuptools) - ,@(package-propagated-inputs base)))))) + (package-with-python2 python-plastid)) (define-public cd-hit (package @@ -1580,9 +1559,8 @@ databases.") ("python-numpy" ,python2-numpy) ("python-scipy" ,python2-scipy))) (native-inputs - `(("python-mock" ,python2-mock) ; for tests - ("python-pytz" ,python2-pytz) ; for tests - ("python-setuptools" ,python2-setuptools))) + `(("python-mock" ,python2-mock) ; for tests + ("python-pytz" ,python2-pytz))) ; for tests (home-page "https://github.com/YeoLab/clipper") (synopsis "CLIP peak enrichment recognition") (description @@ -1755,8 +1733,7 @@ time.") ("zlib" ,zlib))) (native-inputs `(("python-cython" ,python2-cython) - ("python-nose" ,python2-nose) - ("python-setuptools" ,python2-setuptools))) + ("python-nose" ,python2-nose))) (home-page "http://crossmap.sourceforge.net/") (synopsis "Convert genome coordinates between assemblies") (description @@ -1854,8 +1831,7 @@ preparation protocols.") (alist-delete 'check %standard-phases)))) (native-inputs `(("python-cython" ,python-cython) - ("python-nose" ,python-nose) - ("python-setuptools" ,python-setuptools))) + ("python-nose" ,python-nose))) (home-page "https://code.google.com/p/cutadapt/") (synopsis "Remove adapter sequences from nucleotide sequencing reads") (description @@ -1945,10 +1921,7 @@ accessing bigWig files.") (license license:expat))) (define-public python2-pybigwig - (let ((pybigwig (package-with-python2 python-pybigwig))) - (package (inherit pybigwig) - (native-inputs - `(("python-setuptools" ,python2-setuptools)))))) + (package-with-python2 python-pybigwig)) (define-public python-dendropy (package @@ -1997,8 +1970,7 @@ trees (phylogenies) and characters.") ;; There is currently a test failure that only happens on some ;; systems, and only using "setup.py test" (lambda _ (zero? (system* "nosetests"))))))) - (native-inputs `(("python2-setuptools" ,python2-setuptools) - ("python2-nose" ,python2-nose) + (native-inputs `(("python2-nose" ,python2-nose) ,@(package-native-inputs base)))))) @@ -2026,9 +1998,8 @@ trees (phylogenies) and characters.") ("python-pysam" ,python2-pysam) ("python-pybigwig" ,python2-pybigwig))) (native-inputs - `(("python-mock" ,python2-mock) ;for tests - ("python-pytz" ,python2-pytz) ;for tests - ("python-setuptools" ,python2-setuptools))) + `(("python-mock" ,python2-mock) ;for tests + ("python-pytz" ,python2-pytz))) ;for tests (home-page "https://github.com/fidelram/deepTools") (synopsis "Tools for normalizing and visualizing deep-sequencing data") (description @@ -2683,8 +2654,7 @@ comment or quality sections.") ("python-pysam" ,python2-pysam) ("python-networkx" ,python2-networkx))) (native-inputs - `(("python-cython" ,python2-cython) - ("python-setuptools" ,python2-setuptools))) + `(("python-cython" ,python2-cython))) (home-page "http://grit-bio.org") (synopsis "Tool for integrative analysis of RNA-seq type assays") (description @@ -2810,8 +2780,6 @@ HMMs).") `(("python-numpy" ,python2-numpy))) (inputs `(("python-pysam" ,python2-pysam))) - (native-inputs - `(("python-setuptools" ,python2-setuptools))) (home-page "http://www-huber.embl.de/users/anders/HTSeq/") (synopsis "Analysing high-throughput sequencing data with Python") (description @@ -2932,8 +2900,7 @@ data. It also provides the bgzip, htsfile, and tabix utilities.") ("python-numpy" ,python-numpy) ("python-matplotlib" ,python-matplotlib))) (native-inputs - `(("python-cython" ,python-cython) - ("python-setuptools" ,python-setuptools))) + `(("python-cython" ,python-cython))) (home-page "https://github.com/nboley/idr") (synopsis "Tool to measure the irreproducible discovery rate (IDR)") (description @@ -3090,8 +3057,6 @@ data.") #:tests? #f)) ; no test target (inputs `(("python-numpy" ,python2-numpy))) - (native-inputs - `(("python-setuptools" ,python2-setuptools))) (home-page "http://github.com/taoliu/MACS/") (synopsis "Model based analysis for ChIP-Seq data") (description @@ -3423,9 +3388,8 @@ linker_so='gcc -shared'); defines"))))) ("python-scipy" ,python2-scipy) ("python-matplotlib" ,python2-matplotlib))) (native-inputs - `(("python-mock" ,python2-mock) ;for tests - ("python-pytz" ,python2-pytz) ;for tests - ("python-setuptools" ,python2-setuptools))) + `(("python-mock" ,python2-mock) ;for tests + ("python-pytz" ,python2-pytz))) ;for tests (home-page "http://genes.mit.edu/burgelab/miso/index.html") (synopsis "Mixture of Isoforms model for RNA-Seq isoform quantitation") (description @@ -3472,6 +3436,45 @@ program for nucleotide and protein sequences.") ;; License information found in 'muscle -h' and usage.cpp. (license license:public-domain))) +(define-public newick-utils + ;; There are no recent releases so we package from git. + (let ((commit "da121155a977197cab9fbb15953ca1b40b11eb87")) + (package + (name "newick-utils") + (version (string-append "1.6-1." (string-take commit 8))) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/tjunier/newick_utils.git") + (commit commit))) + (file-name (string-append name "-" version "-checkout")) + (sha256 + (base32 + "1hkw21rq1mwf7xp0rmbb2gqc0i6p11108m69i7mr7xcjl268pxnb")))) + (build-system gnu-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'autoconf + (lambda _ (zero? (system* "autoreconf" "-vif"))))))) + (inputs + ;; XXX: TODO: Enable Lua and Guile bindings. + ;; https://github.com/tjunier/newick_utils/issues/13 + `(("libxml2" ,libxml2) + ("flex" ,flex) + ("bison" ,bison))) + (native-inputs + `(("autoconf" ,autoconf) + ("automake" ,automake) + ("libtool" ,libtool))) + (synopsis "Programs for working with newick format phylogenetic trees") + (description + "Newick-utils is a suite of utilities for processing phylogenetic trees +in Newick format. Functions include re-rooting, extracting subtrees, +trimming, pruning, condensing, drawing (ASCII graphics or SVG).") + (home-page "https://github.com/tjunier/newick_utils") + (license license:bsd-3)))) + (define-public orfm (package (name "orfm") @@ -3509,18 +3512,15 @@ interrupted by stop codons. OrfM finds and prints these ORFs.") "1kjmv891d6qbpp4shhhvkl02ff4q5xlpnls2513sm2cjcrs52f1i")))) (build-system python-build-system) (arguments `(#:python ,python-2)) ; pbcore requires Python 2.7 - (inputs + (propagated-inputs `(("python-cython" ,python2-cython) ("python-numpy" ,python2-numpy) ("python-pysam" ,python2-pysam) ("python-h5py" ,python2-h5py))) (native-inputs - `(("python-docutils" ,python2-docutils) - ("python-nose" ,python2-nose) - ("python-setuptools" ,python2-setuptools) - ("python-sphinx" ,python2-sphinx))) - (propagated-inputs - `(("python-pyxb" ,python2-pyxb))) + `(("python-nose" ,python2-nose) + ("python-sphinx" ,python2-sphinx) + ("python-pyxb" ,python2-pyxb))) (home-page "http://pacificbiosciences.github.io/pbcore/") (synopsis "Library for reading and writing PacBio data files") (description @@ -3543,18 +3543,7 @@ files and writing bioinformatics applications.") "1agfz6zqa8nc6cw47yh0s3y14gkpa9wqazwcj7mwwj3ffnw39p3j")))) (build-system python-build-system) (arguments - `(#:python ,python-2 ; requires Python 2.7 - #:phases - (modify-phases %standard-phases - (add-after - 'install 'remove-bin-directory - (lambda* (#:key outputs #:allow-other-keys) - ;; The "bin" directory only contains wrappers for running - ;; the module tests. They are not needed after the - ;; "check" phase. - (delete-file-recursively - (string-append (assoc-ref outputs "out") "/bin")) - #t))))) + `(#:python ,python-2)) ; requires Python 2.7 (propagated-inputs `(("python-scipy" ,python2-scipy) ("python-numpy" ,python2-numpy) @@ -3563,8 +3552,7 @@ files and writing bioinformatics applications.") ("python-pandas" ,python2-pandas) ("python-pysnptools" ,python2-pysnptools))) (native-inputs - `(("python-setuptools" ,python2-setuptools) - ("python-mock" ,python2-mock) + `(("python-mock" ,python2-mock) ("python-nose" ,python2-nose) ("unzip" ,unzip))) (home-page "https://github.com/PMBio/warpedLMM") @@ -3598,11 +3586,6 @@ the phenotype as it models the data.") (build-system python-build-system) (arguments `(#:python ,python-2 - ;; With standard flags, the install phase attempts to create a zip'd - ;; egg file, and fails with an error: 'ZIP does not support timestamps - ;; before 1980' - #:configure-flags '("--single-version-externally-managed" - "--record=pbtranscript-tofu.txt") #:phases (modify-phases %standard-phases (add-after 'unpack 'enter-directory @@ -3626,8 +3609,7 @@ the phenotype as it models the data.") ("python-h5py" ,python2-h5py))) (native-inputs `(("python-cython" ,python2-cython) - ("python-nose" ,python2-nose) - ("python-setuptools" ,python2-setuptools))) + ("python-nose" ,python2-nose))) (home-page "https://github.com/PacificBiosciences/cDNA_primer") (synopsis "Analyze transcriptome data generated with the Iso-Seq protocol") (description @@ -3693,6 +3675,58 @@ for sequences to be aligned and then, simultaneously with the alignment, predicts the locations of structural units in the sequences.") (license license:gpl2+))) +(define-public proteinortho + (package + (name "proteinortho") + (version "5.15") + (source + (origin + (method url-fetch) + (uri + (string-append + "http://www.bioinf.uni-leipzig.de/Software/proteinortho/proteinortho_v" + version "_src.tar.gz")) + (sha256 + (base32 + "05wacnnbx56avpcwhzlcf6b7s77swcpv3qnwz5sh1z54i51gg2ki")))) + (build-system gnu-build-system) + (arguments + `(#:test-target "test" + #:phases + (modify-phases %standard-phases + (replace 'configure + ;; There is no configure script, so we modify the Makefile directly. + (lambda* (#:key outputs #:allow-other-keys) + (substitute* "Makefile" + (("INSTALLDIR=.*") + (string-append + "INSTALLDIR=" (assoc-ref outputs "out") "/bin\n"))) + #t)) + (add-before 'install 'make-install-directory + ;; The install directory is not created during 'make install'. + (lambda* (#:key outputs #:allow-other-keys) + (mkdir-p (string-append (assoc-ref outputs "out") "/bin")) + #t)) + (add-after 'install 'wrap-programs + (lambda* (#:key inputs outputs #:allow-other-keys) + (let* ((path (getenv "PATH")) + (out (assoc-ref outputs "out")) + (binary (string-append out "/bin/proteinortho5.pl"))) + (wrap-program binary `("PATH" ":" prefix (,path)))) + #t))))) + (inputs + `(("perl" ,perl) + ("python" ,python-2) + ("blast+" ,blast+))) + (home-page "http://www.bioinf.uni-leipzig.de/Software/proteinortho") + (synopsis "Detect orthologous genes across species") + (description + "Proteinortho is a tool to detect orthologous genes across different +species. For doing so, it compares similarities of given gene sequences and +clusters them to find significant groups. The algorithm was designed to handle +large-scale data and can be applied to hundreds of species at once.") + (license license:gpl2+))) + (define-public pyicoteo (package (name "pyicoteo") @@ -3765,7 +3799,7 @@ partial genes, and identifies translation initiation sites.") (define-public roary (package (name "roary") - (version "3.6.8") + (version "3.7.0") (source (origin (method url-fetch) @@ -3774,7 +3808,7 @@ partial genes, and identifies translation initiation sites.") version ".tar.gz")) (sha256 (base32 - "0g0pzcv8y7n2w8q7c9q0a7s2ghkwci6w8smg9mjw4agad5cd7yaw")))) + "0x2hpb3nfsc6x2nq1788w0fhqfzc7cn2dp4xwyva9m3k6xlz0m43")))) (build-system perl-build-system) (arguments `(#:phases @@ -4024,7 +4058,6 @@ BAM and Wiggle files in both transcript-coordinate and genomic-coordinate.") `(("python-cython" ,python2-cython) ("python-pysam" ,python2-pysam) ("python-numpy" ,python2-numpy) - ("python-setuptools" ,python2-setuptools) ("zlib" ,zlib))) (native-inputs `(("python-nose" ,python2-nose))) @@ -4586,11 +4619,7 @@ sequence itself can be retrieved from these databases.") (license license:bsd-3))) (define-public python2-screed - (let ((base (package-with-python2 (strip-python2-variant python-screed)))) - (package - (inherit base) - (native-inputs `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-screed)) (define-public sra-tools (package @@ -4752,8 +4781,7 @@ bioinformatics file formats, sequence alignment, and more.") ;; should be removed. `(("python-biopython" ,python2-biopython-1.66))) (native-inputs - `(("python-setuptools" ,python2-setuptools) - ("python-nose" ,python2-nose))) + `(("python-nose" ,python2-nose))) (home-page "http://github.com/fhcrc/seqmagick") (synopsis "Tools for converting and modifying sequence files") (description @@ -7246,6 +7274,29 @@ two-dimensional genome scans.") libraries for systems that do not have these available via other means.") (license license:artistic2.0))) +(define-public r-r4rna + (package + (name "r-r4rna") + (version "0.1.4") + (source + (origin + (method url-fetch) + (uri (string-append "http://www.e-rna.org/r-chie/files/R4RNA_" + version ".tar.gz")) + (sha256 + (base32 + "1p0i78wh76jfgmn9jphbwwaz6yy6pipzfg08xs54cxavxg2j81p5")))) + (build-system r-build-system) + (propagated-inputs + `(("r-optparse" ,r-optparse) + ("r-rcolorbrewer" ,r-rcolorbrewer))) + (home-page "http://www.e-rna.org/r-chie/index.cgi") + (synopsis "Analysis framework for RNA secondary structure") + (description + "The R4RNA package aims to be a general framework for the analysis of RNA +secondary structure and comparative analysis in R.") + (license license:gpl3+))) + (define-public r-rhtslib (package (name "r-rhtslib") @@ -7426,6 +7477,141 @@ characterization and visualization of a wide range of mutational patterns in SNV base substitution data.") (license license:expat))) +(define-public r-wgcna + (package + (name "r-wgcna") + (version "1.51") + (source + (origin + (method url-fetch) + (uri (cran-uri "WGCNA" version)) + (sha256 + (base32 + "0hzvnhw76vwg8bl8x368f0c5szpwb8323bmrb3bir93i5bmfjsxx")))) + (properties `((upstream-name . "WGCNA"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-doparallel" ,r-doparallel) + ("r-dynamictreecut" ,r-dynamictreecut) + ("r-fastcluster" ,r-fastcluster) + ("r-foreach" ,r-foreach) + ("r-go-db" ,r-go-db) + ("r-hmisc" ,r-hmisc) + ("r-impute" ,r-impute) + ("r-matrixstats" ,r-matrixstats) + ("r-preprocesscore" ,r-preprocesscore))) + (home-page + "http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/Rpackages/WGCNA/") + (synopsis "Weighted correlation network analysis") + (description + "This package provides functions necessary to perform Weighted +Correlation Network Analysis on high-dimensional data. It includes functions +for rudimentary data cleaning, construction and summarization of correlation +networks, module identification and functions for relating both variables and +modules to sample traits. It also includes a number of utility functions for +data manipulation and visualization.") + (license license:gpl2+))) + +(define-public r-chipkernels + (let ((commit "c9cfcacb626b1221094fb3490ea7bac0fd625372") + (revision "1")) + (package + (name "r-chipkernels") + (version (string-append "1.1-" revision "." (string-take commit 9))) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/ManuSetty/ChIPKernels.git") + (commit commit))) + (file-name (string-append name "-" version)) + (sha256 + (base32 + "14bj5qhjm1hsm9ay561nfbqi9wxsa7y487df2idsaaf6z10nw4v0")))) + (build-system r-build-system) + (propagated-inputs + `(("r-iranges" ,r-iranges) + ("r-xvector" ,r-xvector) + ("r-biostrings" ,r-biostrings) + ("r-bsgenome" ,r-bsgenome) + ("r-gtools" ,r-gtools) + ("r-genomicranges" ,r-genomicranges) + ("r-sfsmisc" ,r-sfsmisc) + ("r-kernlab" ,r-kernlab) + ("r-s4vectors" ,r-s4vectors) + ("r-biocgenerics" ,r-biocgenerics))) + (home-page "https://github.com/ManuSetty/ChIPKernels") + (synopsis "Build string kernels for DNA Sequence analysis") + (description "ChIPKernels is an R package for building different string +kernels used for DNA Sequence analysis. A dictionary of the desired kernel +must be built and this dictionary can be used for determining kernels for DNA +Sequences.") + (license license:gpl2+)))) + +(define-public r-seqgl + (package + (name "r-seqgl") + (version "1.1.4") + (source + (origin + (method url-fetch) + (uri (string-append "https://github.com/ManuSetty/SeqGL/" + "archive/" version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "0pnk1p3sci5yipyc8xnb6jbmydpl80fld927xgnbcv104hy8h8yh")))) + (build-system r-build-system) + (propagated-inputs + `(("r-biostrings" ,r-biostrings) + ("r-chipkernels" ,r-chipkernels) + ("r-genomicranges" ,r-genomicranges) + ("r-spams" ,r-spams) + ("r-wgcna" ,r-wgcna) + ("r-fastcluster" ,r-fastcluster))) + (home-page "https://github.com/ManuSetty/SeqGL") + (synopsis "Group lasso for Dnase/ChIP-seq data") + (description "SeqGL is a group lasso based algorithm to extract +transcription factor sequence signals from ChIP, DNase and ATAC-seq profiles. +This package presents a method which uses group lasso to discriminate between +bound and non bound genomic regions to accurately identify transcription +factors bound at the specific regions.") + (license license:gpl2+))) + +(define-public r-gkmsvm + (package + (name "r-gkmsvm") + (version "0.71.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "gkmSVM" version)) + (sha256 + (base32 + "1zpxgxmf2nd5j5wn00ps6kfxr8wxh7d1swr1rr4spq7sj5z5z0k0")))) + (properties `((upstream-name . "gkmSVM"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-biostrings" ,r-biostrings) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicranges" ,r-genomicranges) + ("r-iranges" ,r-iranges) + ("r-kernlab" ,r-kernlab) + ("r-rcpp" ,r-rcpp) + ("r-rocr" ,r-rocr) + ("r-rtracklayer" ,r-rtracklayer) + ("r-s4vectors" ,r-s4vectors) + ("r-seqinr" ,r-seqinr))) + (home-page "http://cran.r-project.org/web/packages/gkmSVM") + (synopsis "Gapped-kmer support vector machine") + (description + "This R package provides tools for training gapped-kmer SVM classifiers +for DNA and protein sequences. This package supports several sequence +kernels, including: gkmSVM, kmer-SVM, mismatch kernel and wildcard kernel.") + (license license:gpl2+))) + (define-public emboss (package (name "emboss") @@ -7615,19 +7801,7 @@ may optionally be provided to further inform the peak-calling process.") (build-system python-build-system) (arguments `(#:python ,python-2 ; python2 only - #:tests? #f ; no tests included - #:phases - (modify-phases %standard-phases - ;; When setuptools is used a ".egg" archive is generated and - ;; installed. This makes it hard to actually run PePr. This issue - ;; has been reported upstream: - ;; https://github.com/shawnzhangyx/PePr/issues/9 - (add-after 'unpack 'disable-egg-generation - (lambda _ - (substitute* "setup.py" - (("from setuptools import setup") - "from distutils.core import setup")) - #t))))) + #:tests? #f)) ; no tests included (propagated-inputs `(("python2-numpy" ,python2-numpy) ("python2-scipy" ,python2-scipy) @@ -7689,8 +7863,6 @@ replacement for strverscmp.") ("python-click" ,python-click) ("python-matplotlib" ,python-matplotlib) ("python-numpy" ,python-numpy))) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (home-page "http://multiqc.info") (synopsis "Aggregate bioinformatics analysis reports") (description diff --git a/gnu/packages/bittorrent.scm b/gnu/packages/bittorrent.scm index ad67e02270..eff1b5a1c4 100644 --- a/gnu/packages/bittorrent.scm +++ b/gnu/packages/bittorrent.scm @@ -49,7 +49,7 @@ (define-public transmission (package (name "transmission") - (version "2.84") + (version "2.92") (source (origin (method url-fetch) (uri (string-append @@ -57,7 +57,7 @@ version ".tar.xz")) (sha256 (base32 - "1sxr1magqb5s26yvr5yhs1f7bmir8gl09niafg64lhgfnhv1kz59")))) + "0pykmhi7pdmzq47glbj8i2im6iarp4wnj4l1pyvsrnba61f0939s")))) (build-system glib-or-gtk-build-system) (outputs '("out" ; library and command-line interface "gui")) ; graphical user interface @@ -84,6 +84,7 @@ `(("inotify-tools" ,inotify-tools) ("libevent" ,libevent) ("curl" ,curl) + ("cyrus-sasl" ,cyrus-sasl) ("openssl" ,openssl) ("file" ,file) ("zlib" ,zlib) diff --git a/gnu/packages/calendar.scm b/gnu/packages/calendar.scm index 306c949066..447dcd698e 100644 --- a/gnu/packages/calendar.scm +++ b/gnu/packages/calendar.scm @@ -96,10 +96,9 @@ data units.") `(#:phases (modify-phases %standard-phases ;; Building the manpage requires khal to be installed. (add-after 'install 'manpage - (lambda* (#:key outputs #:allow-other-keys) - (setenv "PYTHONPATH" - (string-append - (getenv "PYTHONPATH") ":" (assoc-ref outputs "out"))) + (lambda* (#:key inputs outputs #:allow-other-keys) + ;; Make installed package available for running the tests + (add-installed-pythonpath inputs outputs) (zero? (system* "make" "--directory=doc/" "man")) (install-file "doc/build/man/khal.1" diff --git a/gnu/packages/ci.scm b/gnu/packages/ci.scm index 3f54ff1298..f07e75ad4e 100644 --- a/gnu/packages/ci.scm +++ b/gnu/packages/ci.scm @@ -1,5 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2015 Eric Bavier <bavier@member.fsf.org> +;;; Copyright © 2016 Jan Nieuwenhuizen <janneke@gnu.org> +;;; Copyright © 2016 Mathieu Lirzin <mthl@gnu.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -181,3 +183,53 @@ release that uses a purely functional language to describe build jobs and their dependencies.") (license l:gpl3+)))) + +(define-public cuirass + (let ((commit "7248c0038f3d0bfcf6c469d534efb4a13952c112") + (revision "1")) + (package + (name "cuirass") + (version (string-append "0.0.1-" revision "." (string-take commit 7))) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://notabug.org/mthl/cuirass") + (commit commit))) + (file-name (string-append name "-" version)) + (sha256 + (base32 + "0hkwh2pcz3wzg1n533ch2w7vwr97yr369q4ki0yqk99wfipjrydw")))) + (build-system gnu-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'bootstrap + (lambda _ (zero? (system* "sh" "bootstrap")))) + (add-after 'install 'wrap-program + (lambda* (#:key inputs outputs #:allow-other-keys) + ;; Wrap the 'cuirass' command to refer to the right modules. + (let* ((out (assoc-ref outputs "out")) + (json (assoc-ref inputs "guile-json")) + (sqlite (assoc-ref inputs "guile-sqlite3")) + (guix (assoc-ref inputs "guix")) + (mods (string-append json "/share/guile/site/2.0:" + sqlite "/share/guile/site/2.0:" + guix "/share/guile/site/2.0"))) + (wrap-program (string-append out "/bin/cuirass") + `("GUILE_LOAD_PATH" ":" prefix (,mods)) + `("GUILE_LOAD_COMPILED_PATH" ":" prefix (,mods))))))))) + (inputs + `(("guile" ,guile-2.0) + ("guile-json" ,guile-json) + ("guile-sqlite3" ,guile-sqlite3) + ("guix" ,guix))) + (native-inputs + `(("autoconf" ,autoconf) + ("automake" ,automake) + ("pkg-config" ,pkg-config))) + (synopsis "Continuous integration system") + (description + "Cuirass is a continuous integration tool using GNU Guix. It is +intended as a replacement for Hydra.") + (home-page "https://notabug.org/mthl/cuirass") + (license l:gpl3+)))) diff --git a/gnu/packages/compression.scm b/gnu/packages/compression.scm index b6c8604a23..bdf87562e4 100644 --- a/gnu/packages/compression.scm +++ b/gnu/packages/compression.scm @@ -603,24 +603,24 @@ writing of compressed data created with the zlib and bzip2 libraries.") (define-public lz4 (package (name "lz4") - (version "131") + (version "1.7.4.2") (source (origin (method url-fetch) (uri (string-append "https://github.com/Cyan4973/lz4/archive/" - "r" version ".tar.gz")) + "v" version ".tar.gz")) (sha256 - (base32 "1vfg305zvj50hwscad24wan9jar6nqj14gdk2hqyr7bb9mhh0kcx")) + (base32 "0l39bymif15rmmfz7h6wvrr853rix4wj8wbqq8z8fm49xa7gx9fb")) (file-name (string-append name "-" version ".tar.gz")))) (build-system gnu-build-system) - (native-inputs `(("valgrind" ,valgrind))) + (native-inputs `(("valgrind" ,valgrind))) ; for tests (arguments `(#:test-target "test" #:parallel-tests? #f ; tests fail if run in parallel #:make-flags (list "CC=gcc" (string-append "PREFIX=" (assoc-ref %outputs "out"))) #:phases (modify-phases %standard-phases - (delete 'configure)))) + (delete 'configure)))) ; no configure script (home-page "https://github.com/Cyan4973/lz4") (synopsis "Compression algorithm focused on speed") (description "LZ4 is a lossless compression algorithm, providing diff --git a/gnu/packages/crypto.scm b/gnu/packages/crypto.scm index c7445a1eba..e4a8a4bd54 100644 --- a/gnu/packages/crypto.scm +++ b/gnu/packages/crypto.scm @@ -56,7 +56,7 @@ (define-public libsodium (package (name "libsodium") - (version "1.0.10") + (version "1.0.11") (source (origin (method url-fetch) (uri (list (string-append @@ -67,7 +67,7 @@ "releases/old/libsodium-" version ".tar.gz"))) (sha256 (base32 - "1gn45g956lyz8l6iq187yc6l627vyivyp8qc5dkr6dnhdnlqddvi")))) + "0rf7z6bgpnf8lyz8sph4h43fbb28pmj4dgybf0hsxxj97kdljid1")))) (build-system gnu-build-system) (synopsis "Portable NaCl-based crypto library") (description diff --git a/gnu/packages/cups.scm b/gnu/packages/cups.scm index 802accf6c6..0a8a10ecb4 100644 --- a/gnu/packages/cups.scm +++ b/gnu/packages/cups.scm @@ -317,14 +317,14 @@ device-specific programs to convert and print many types of files.") (define-public hplip (package (name "hplip") - (version "3.16.10") + (version "3.16.11") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/hplip/hplip/" version "/hplip-" version ".tar.gz")) (sha256 (base32 - "117f1p0splg51ljn4nn97c0mbl0jba440ahb3d8njq7p6h1lxd25")))) + "094vkyr0rjng72m13dgr824cdl7q20x23qjxzih4w7l9njn0rqpn")))) (build-system gnu-build-system) (home-page "http://hplipopensource.com/") (synopsis "HP Printer Drivers") diff --git a/gnu/packages/cyrus-sasl.scm b/gnu/packages/cyrus-sasl.scm index 99ff1e228e..89a4a49797 100644 --- a/gnu/packages/cyrus-sasl.scm +++ b/gnu/packages/cyrus-sasl.scm @@ -1,6 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2013, 2014, 2015 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2013 Andreas Enge <andreas@enge.fr> +;;; Copyright © 2016 Leo Famulari <leo@famulari.name> ;;; ;;; This file is part of GNU Guix. ;;; @@ -30,6 +31,7 @@ (define-public cyrus-sasl (package (name "cyrus-sasl") + (replacement cyrus-sasl/fixed) (version "2.1.26") (source (origin (method url-fetch) @@ -64,3 +66,10 @@ server writers.") (license (license:non-copyleft "file://COPYING" "See COPYING in the distribution.")) (home-page "http://cyrusimap.web.cmu.edu"))) + +(define cyrus-sasl/fixed + (package + (inherit cyrus-sasl) + (source (origin + (inherit (package-source cyrus-sasl)) + (patches (search-patches "cyrus-sasl-CVE-2013-4122.patch")))))) diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm index d6746f092f..bd60e4cc66 100644 --- a/gnu/packages/databases.scm +++ b/gnu/packages/databases.scm @@ -819,15 +819,15 @@ columns, primary keys, unique constraints and relationships.") (define-public perl-dbd-mysql (package (name "perl-dbd-mysql") - (version "4.039") + (version "4.041") (source (origin (method url-fetch) - (uri (string-append "mirror://cpan/authors/id/C/CA/CAPTTOFU/" + (uri (string-append "mirror://cpan/authors/id/M/MI/MICHIELB/" "DBD-mysql-" version ".tar.gz")) (sha256 (base32 - "0k4p3bjdbmxm2amb0qiiwmn8v83zrjkz5qp84xdjrg8k5v9aj0hn")))) + "0h4h6zwzj8fwh9ljb8svnsa0a3ch4p10hp59kpdibdb4qh8xwxs7")))) (build-system perl-build-system) ;; Tests require running MySQL server (arguments `(#:tests? #f)) diff --git a/gnu/packages/dav.scm b/gnu/packages/dav.scm index 835b8fcf39..a06878dc92 100644 --- a/gnu/packages/dav.scm +++ b/gnu/packages/dav.scm @@ -73,11 +73,8 @@ clients.") ;; vdirsyncer requires itself to be installed in order to build ;; the manpage. (add-after 'install 'manpage - (lambda* (#:key outputs #:allow-other-keys) - (setenv "PYTHONPATH" - (string-append - (getenv "PYTHONPATH") - ":" (assoc-ref outputs "out"))) + (lambda* (#:key inputs outputs #:allow-other-keys) + (add-installed-pythonpath inputs outputs) (zero? (system* "make" "--directory=docs/" "man")) (install-file "docs/_build/man/vdirsyncer.1" diff --git a/gnu/packages/debug.scm b/gnu/packages/debug.scm index 54ed5cd36a..b7d6bbc0eb 100644 --- a/gnu/packages/debug.scm +++ b/gnu/packages/debug.scm @@ -314,3 +314,25 @@ no race conditions.") ;; and patched GNU Make is under its own license. (license (list (non-copyleft "COPYING.md") (package-license gnu-make)))))) + +(define-public zzuf + (package + (name "zzuf") + (version "0.15") + (source + (origin + (method url-fetch) + (uri (string-append + "https://github.com/samhocevar/zzuf/releases/download/v" + version "/" name "-" version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1mpzjaksc2qg2hzqflf39pl06p53qam2dn3hkhkcv6p00d2n4kx3")))) + (build-system gnu-build-system) + (home-page "https://github.com/samhocevar/zzuf") + (synopsis "Transparent application input fuzzer") + (description "Zzuf is a transparent application input fuzzer. It works by +intercepting file operations and changing random bits in the program's +input. Zzuf's behaviour is deterministic, making it easy to reproduce bugs.") + (license (non-copyleft "http://www.wtfpl.net/txt/copying/")))) diff --git a/gnu/packages/django.scm b/gnu/packages/django.scm index f56ed58363..bbb2d71db1 100644 --- a/gnu/packages/django.scm +++ b/gnu/packages/django.scm @@ -54,10 +54,6 @@ (string-append ".:" (getenv "PYTHONPATH"))) (zero? (system* "python" "tests/runtests.py"))))))) ;; TODO: Install extras/django_bash_completion. - (propagated-inputs - ;; Django uses 'pkg_resources' (part of setuptools) to locate templates - ;; at run-time. - `(("python-setuptools" ,python-setuptools))) (native-inputs `(("tzdata", tzdata) ;; bcrypt and argon2-cffi are extra requirements not yet in guix @@ -112,8 +108,6 @@ to the @dfn{don't repeat yourself} (DRY) principle.") (build-system python-build-system) (propagated-inputs `(("python-django" ,python-django))) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (home-page "https://github.com/alsoicode/django-simple-math-captcha") (synopsis "Easy-to-use math field/widget captcha for Django forms") (description @@ -147,23 +141,16 @@ with arguments to the field constructor.") (native-inputs `(("python-django" ,python-django) ("python-setuptools-scm" ,python-setuptools-scm))) - (inputs - `(("python-py" ,python-py) - ("python-pytest" ,python-pytest))) + (propagated-inputs + `(("python-pytest" ,python-pytest))) (home-page "http://pytest-django.readthedocs.org/") (synopsis "Django plugin for py.test") (description "Pytest-django is a plugin for py.test that provides a set of useful tools for testing Django applications and projects.") - (properties `((python2-variant . ,(delay python2-pytest-django)))) (license license:bsd-3))) (define-public python2-pytest-django - (let ((base (package-with-python2 - (strip-python2-variant python-pytest-django)))) - (package (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-pytest-django)) (define-public python-django-filter (package @@ -186,13 +173,7 @@ useful tools for testing Django applications and projects.") some of the more mundane bits of view code. Specifically, it allows users to filter down a queryset based on a model’s fields, displaying the form to let them do this.") - (properties `((python2-variant . ,(delay python2-django-filter)))) (license license:bsd-3))) (define-public python2-django-filter - (let ((base (package-with-python2 - (strip-python2-variant python-django-filter)))) - (package (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-django-filter)) diff --git a/gnu/packages/docbook.scm b/gnu/packages/docbook.scm index fe183a18e0..4ea586c80a 100644 --- a/gnu/packages/docbook.scm +++ b/gnu/packages/docbook.scm @@ -185,8 +185,7 @@ by no means limited to these applications.) This package provides XML DTDs.") (build-system python-build-system) ;; TODO: Add xfig/transfig for fig2dev utility (inputs - `(("python-setuptools" ,python-setuptools) - ("texlive" ,texlive) + `(("texlive" ,texlive) ("imagemagick" ,imagemagick) ;for convert ("inkscape" ,inkscape) ;for svg conversion ("docbook" ,docbook-xml) diff --git a/gnu/packages/docker.scm b/gnu/packages/docker.scm index 0760001da7..3cfdb7ef55 100644 --- a/gnu/packages/docker.scm +++ b/gnu/packages/docker.scm @@ -42,7 +42,6 @@ (arguments '(#:tests? #f)) (inputs `(("python-requests" ,python-requests) - ("python-setuptools" ,python-setuptools) ("python-six" ,python-six) ("python-websocket-client" ,python-websocket-client))) (home-page "https://github.com/docker/docker-py/") @@ -93,7 +92,6 @@ client.") ("python-jsonschema" ,python-jsonschema) ("python-pyyaml" ,python-pyyaml) ("python-requests" ,python-requests-2.7) - ("python-setuptools" ,python-setuptools) ("python-six" ,python-six) ("python-texttable" ,python-texttable) ("python-websocket-client" ,python-websocket-client))) diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm index f720906534..831e63beda 100644 --- a/gnu/packages/engineering.scm +++ b/gnu/packages/engineering.scm @@ -4,6 +4,7 @@ ;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016 David Thompson <davet@gnu.org> ;;; Copyright © 2016 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2016 Theodoros Foradis <theodoros.for@openmailbox.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -29,6 +30,7 @@ #:use-module (guix store) #:use-module (guix utils) #:use-module ((guix licenses) #:prefix license:) + #:use-module (guix build-system cmake) #:use-module (guix build-system gnu) #:use-module (guix build-system cmake) #:use-module (gnu packages) @@ -39,6 +41,7 @@ #:use-module (gnu packages boost) #:use-module (gnu packages check) #:use-module (gnu packages compression) + #:use-module (gnu packages curl) #:use-module (gnu packages flex) #:use-module (gnu packages fontutils) #:use-module (gnu packages gd) @@ -55,9 +58,14 @@ #:use-module (gnu packages maths) #:use-module (gnu packages perl) #:use-module (gnu packages pkg-config) + #:use-module (gnu packages python) #:use-module (gnu packages qt) + #:use-module (gnu packages swig) #:use-module (gnu packages tcl) + #:use-module (gnu packages tls) #:use-module (gnu packages tex) + #:use-module (gnu packages wxwidgets) + #:use-module (gnu packages xorg) #:use-module (srfi srfi-1)) (define-public librecad @@ -588,3 +596,149 @@ fundamental, primitive shapes are represented as code in the user-level language.") (license (list license:lgpl2.1+ ;library license:gpl2+))))) ;Guile bindings + +;; We use kicad from a git commit, because support for boost 1.61.0 has been +;; recently added. +(define-public kicad + (let ((commit "4ee344e150bfaf3a6f3f7bf935fb96ae07c423fa") + (revision "1")) + (package + (name "kicad") + (version (string-append "4.0-" revision "." + (string-take commit 7))) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://git.launchpad.net/kicad") + (commit commit))) + (sha256 + (base32 "0kf6r92nps0658i9n3p9vp5dzbssmc22lvjv5flyvnlf83l63s4n")) + (file-name (string-append name "-" version "-checkout")))) + (build-system cmake-build-system) + (arguments + `(#:out-of-source? #t + #:tests? #f ; no tests + #:configure-flags + (list "-DKICAD_STABLE_VERSION=ON" + "-DKICAD_REPO_NAME=stable" + ,(string-append "-DKICAD_BUILD_VERSION=4.0-" + (string-take commit 7)) + "-DCMAKE_BUILD_TYPE=Release" + "-DKICAD_SKIP_BOOST=ON"; Use our system's boost library. + "-DKICAD_SCRIPTING=ON" + "-DKICAD_SCRIPTING_MODULES=ON" + "-DKICAD_SCRIPTING_WXPYTHON=ON" + ;; Has to be set explicitely, as we don't have the wxPython + ;; headers in the wxwidgets store item, but in wxPython. + (string-append "-DCMAKE_CXX_FLAGS=-I" + (assoc-ref %build-inputs "wxpython") + "/include/wx-3.0") + "-DCMAKE_BUILD_WITH_INSTALL_RPATH=TRUE" + ;; TODO: Enable this when CA certs are working with curl. + "-DBUILD_GITHUB_PLUGIN=OFF") + #:phases + (modify-phases %standard-phases + (add-after 'install 'wrap-program + ;; Ensure correct Python at runtime. + (lambda* (#:key inputs outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (python (assoc-ref inputs "python")) + (file (string-append out "/bin/kicad")) + (path (string-append + out + "/lib/python2.7/site-packages:" + (getenv "PYTHONPATH")))) + (wrap-program file + `("PYTHONPATH" ":" prefix (,path)) + `("PATH" ":" prefix + (,(string-append python "/bin:"))))) + #t))))) + (native-inputs + `(("boost" ,boost) + ("gettext" ,gnu-gettext) + ("pkg-config" ,pkg-config) + ("swig" ,swig) + ("zlib" ,zlib))) + (inputs + `(("cairo" ,cairo) + ("curl" ,curl) + ("desktop-file-utils" ,desktop-file-utils) + ("glew" ,glew) + ("glm" ,glm) + ("hicolor-icon-theme" ,hicolor-icon-theme) + ("libsm" ,libsm) + ("mesa" ,mesa) + ("openssl" ,openssl) + ("python" ,python-2) + ("wxwidgets" ,wxwidgets-gtk2) + ("wxpython" ,python2-wxpython))) + (home-page "http://kicad-pcb.org/") + (synopsis "Electronics Design Automation Suite") + (description "Kicad is a program for the formation of printed circuit +boards and electrical circuits. The software has a number of programs that +perform specific functions, for example, pcbnew (Editing PCB), eeschema (editing +electrical diagrams), gerbview (viewing Gerber files) and others.") + (license license:gpl3+)))) + +(define-public kicad-library + (let ((version "4.0.4")) + (package + (name "kicad-library") + (version version) + (source (origin + (method url-fetch) + (uri (string-append + "http://downloads.kicad-pcb.org/libraries/kicad-library-" + version ".tar.gz")) + (sha256 + (base32 + "1wyda58y39lhxml0xv1ngvddi0nqihx9bnlza46ajzms38ajvh12")))) + (build-system cmake-build-system) + (arguments + `(#:out-of-source? #t + #:tests? #f ; no tests + #:phases + (modify-phases %standard-phases + (add-after 'install 'install-footprints ; from footprints tarball + (lambda* (#:key inputs outputs #:allow-other-keys) + (zero? (system* "tar" "xvf" + (assoc-ref inputs "kicad-footprints") + "-C" (string-append (assoc-ref outputs "out") + "/share/kicad/modules") + "--strip-components=1")))) + ;; We change the default global footprint file, which is generated if + ;; it doesn't exist in user's home directory, from the one using the + ;; github plugin, to the one using the KISYSMOD environment path. + (add-after 'install-footprints 'use-pretty-footprint-table + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (template-dir (string-append out "/share/kicad/template")) + (fp-lib-table (string-append template-dir "/fp-lib-table"))) + (delete-file fp-lib-table) + (copy-file (string-append fp-lib-table ".for-pretty") + fp-lib-table)) + #t))))) + (native-search-paths + (list (search-path-specification + (variable "KISYSMOD") ; footprint path + (files '("share/kicad/modules"))) + (search-path-specification + (variable "KISYS3DMOD") ; 3D model path + (files '("share/kicad/modules/packages3d"))))) + ;; Kicad distributes footprints in a separate tarball + (native-inputs + `(("kicad-footprints" + ,(origin + (method url-fetch) + (uri (string-append + "http://downloads.kicad-pcb.org/libraries/kicad-footprints-" + version ".tar.gz")) + (sha256 + (base32 + "0ya4gg6clz3vp2wrb67xwg0bhwh5q8ag39jjmpcp4zjcqs1f48rb")))))) + (home-page "http://kicad-pcb.org/") + (synopsis "Libraries for kicad") + (description "This package provides Kicad component, footprint and 3D +render model libraries.") + (license license:lgpl2.0+)))) diff --git a/gnu/packages/enlightenment.scm b/gnu/packages/enlightenment.scm index 25b8caf306..ae0f553a36 100644 --- a/gnu/packages/enlightenment.scm +++ b/gnu/packages/enlightenment.scm @@ -56,7 +56,7 @@ (define-public efl (package (name "efl") - (version "1.18.2") + (version "1.18.3") (source (origin (method url-fetch) (uri (string-append @@ -64,7 +64,7 @@ version ".tar.xz")) (sha256 (base32 - "1vbvsrrpkvvrmvjavwnp5q77kw5i7vmbaj2vq5mnmrbzamvaybr9")))) + "1h347sfxajyb5s931m9qga14wwiqci7aicww2imxjhzm8w4fqj07")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config))) diff --git a/gnu/packages/fonts.scm b/gnu/packages/fonts.scm index 009efd2955..f385559f7e 100644 --- a/gnu/packages/fonts.scm +++ b/gnu/packages/fonts.scm @@ -13,6 +13,7 @@ ;;; Copyright © 2016 Dmitry Nikolaev <cameltheman@gmail.com> ;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016 Marius Bakke <mbakke@fastmail.com> +;;; Copyright © 2016 Toni Reina <areina@riseup.net> ;;; ;;; This file is part of GNU Guix. ;;; @@ -898,3 +899,38 @@ powerline support.") "Source Code Pro is a set of monospaced OpenType fonts that have been designed to work well in user interface environments.") (license license:silofl1.1))) + +(define-public font-fira-mono + (package + (name "font-fira-mono") + (version "3.206") + (source (origin + (method url-fetch) + (uri (string-append "https://carrois.com/downloads/fira_mono_3_2/" + "FiraMonoFonts" + (string-replace-substring version "." "") + ".zip")) + (sha256 + (base32 + "1z65x0dw5dq6rs6p9wyfrir50rlh95vgzsxr8jcd40nqazw4jhpi")))) + (build-system trivial-build-system) + (arguments + `(#:modules ((guix build utils)) + #:builder + (begin + (use-modules (guix build utils)) + (let ((unzip (string-append (assoc-ref %build-inputs "unzip") + "/bin/unzip")) + (font-dir (string-append %output "/share/fonts/opentype"))) + (mkdir-p font-dir) + (system* unzip + "-j" + (assoc-ref %build-inputs "source") + "*.otf" + "-d" font-dir))))) + (native-inputs + `(("unzip" ,unzip))) + (home-page "http://mozilla.github.io/Fira/") + (synopsis "Mozilla's monospace font") + (description "This is the typeface used by Mozilla in Firefox OS.") + (license license:silofl1.1))) diff --git a/gnu/packages/freedesktop.scm b/gnu/packages/freedesktop.scm index 456d569063..37707796e4 100644 --- a/gnu/packages/freedesktop.scm +++ b/gnu/packages/freedesktop.scm @@ -256,8 +256,7 @@ of a the system to know what users are logged in, and where.") (native-inputs `(("shared-mime-info" ,shared-mime-info) ;for tests ("hicolor-icon-theme" ,hicolor-icon-theme) ;for tests - ("python-nose" ,python-nose) - ("python-setuptools" ,python-setuptools))) + ("python-nose" ,python-nose))) (home-page "http://freedesktop.org/wiki/Software/pyxdg") (synopsis "Implementations of freedesktop.org standards in Python") (description @@ -451,17 +450,19 @@ Analysis and Reporting Technology) functionality.") (define-public udisks (package (name "udisks") - (version "2.1.7") + (version "2.1.8") (source (origin (method url-fetch) (uri (string-append "https://udisks.freedesktop.org/releases/" name "-" version ".tar.bz2")) (sha256 (base32 - "119pr2zbff8vkwlhghim7d7ir24c1dil9hp4q49wm4f6pnrjpbmb")))) + "1nkxhnqh39c9pzvm4zfj50rgv6apqawdx09bv3sfaxrah4a6jhfs")))) (build-system gnu-build-system) (native-inputs - `(("glib:bin" ,glib "bin") ; for glib-mkenums + `(("docbook-xml" ,docbook-xml-4.3) ; to build the manpages + ("docbook-xsl" ,docbook-xsl) + ("glib:bin" ,glib "bin") ; for glib-mkenums ("gobject-introspection" ,gobject-introspection) ("intltool" ,intltool) ("pkg-config" ,pkg-config) @@ -480,13 +481,28 @@ Analysis and Reporting Technology) functionality.") `(#:tests? #f ; requiring system message dbus #:disallowed-references ("doc") ;enforce separation of "doc" #:configure-flags - (list "--disable-man" + (list "--enable-man" "--localstatedir=/var" "--enable-fhs-media" ;mount devices in /media, not /run/media (string-append "--with-html-dir=" (assoc-ref %outputs "doc") "/share/doc/udisks/html") (string-append "--with-udevdir=" %output "/lib/udev")) + #:make-flags + (let* ((docbook-xsl-name-version ,(string-append + (package-name docbook-xsl) "-" + (package-version docbook-xsl))) + (docbook-xsl-catalog-file (string-append + (assoc-ref %build-inputs "docbook-xsl") + "/xml/xsl/" + docbook-xsl-name-version + "/catalog.xml")) + (docbook-xml-catalog-file (string-append + (assoc-ref %build-inputs "docbook-xml") + "/xml/dtd/docbook/catalog.xml"))) + ;; Reference the catalog files required to build the manpages. + (list (string-append "XML_CATALOG_FILES=" docbook-xsl-catalog-file " " + docbook-xml-catalog-file))) #:phases (modify-phases %standard-phases (add-before @@ -509,7 +525,7 @@ Analysis and Reporting Technology) functionality.") "/run/current-system/profile/bin" "/run/current-system/profile/sbin"))) #t)))))) - (home-page "http://www.freedesktop.org/wiki/Software/udisks/") + (home-page "https://www.freedesktop.org/wiki/Software/udisks/") (synopsis "Disk manager service") (description "UDisks provides interfaces to enumerate and perform operations on disks diff --git a/gnu/packages/game-development.scm b/gnu/packages/game-development.scm index 76c06ecc72..e83294d9c4 100644 --- a/gnu/packages/game-development.scm +++ b/gnu/packages/game-development.scm @@ -591,8 +591,6 @@ interface (API).") (string-append v4l-ref "/include/libv4l1-videodev.h") "linux/videodev.h") (system* "ln" "--symbolic" "Setup.in" "Setup"))))))) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (inputs `(("sdl" ,sdl) ("sdl-image" ,sdl-image) diff --git a/gnu/packages/gcc.scm b/gnu/packages/gcc.scm index c26cc4f497..72e2309c33 100644 --- a/gnu/packages/gcc.scm +++ b/gnu/packages/gcc.scm @@ -521,6 +521,7 @@ as the 'native-search-paths' field." (define-public gcj (package (inherit gcc) (name "gcj") + (version (package-version gcc)) (inputs `(("fastjar" ,fastjar) ("perl" ,perl) @@ -529,6 +530,15 @@ as the 'native-search-paths' field." ,@(package-inputs gcc))) (native-inputs `(("dejagnu" ,dejagnu) + ,@(if (string-prefix? "armhf" (or (%current-system) + (%current-target-system))) + `(("arm-patch" ,(origin + (method url-fetch) + (uri (search-patch "gcj-arm-mode.patch")) + (sha256 + (base32 + "1z15xs5yx6qinnb572swzxrn9f668sw7ga5280q3gznj1jyrynfn"))))) + '()) ,@(package-native-inputs gcc))) (native-search-paths %generic-search-paths) @@ -556,6 +566,14 @@ as the 'native-search-paths' field." ,flags)))) ((#:phases phases) `(modify-phases ,phases + ;; Conditionally add phase to apply patch + ,@(if (string-prefix? "armhf" (or (%current-system) + (%current-target-system))) + `((add-after 'unpack 'apply-arm-patch + (lambda* (#:key inputs #:allow-other-keys) + (zero? (system* "patch" "-p1" + "-i" (assoc-ref inputs "arm-patch")))))) + '()) (add-after 'unpack 'add-lib-output-to-rpath (lambda _ @@ -568,6 +586,10 @@ as the 'native-search-paths' field." 'unpack 'patch-testsuite ;; dejagnu-1.6 removes the 'absolute' command (lambda _ + ;; This test fails on armhf. It seems harmless enough to disable it. + (for-each delete-file '("libjava/testsuite/libjava.lang/Throw_2.java" + "libjava/testsuite/libjava.lang/Throw_2.out" + "libjava/testsuite/libjava.lang/Throw_2.jar")) (substitute* "libjava/testsuite/lib/libjava.exp" (("absolute") "file normalize")) #t)) diff --git a/gnu/packages/gnupg.scm b/gnu/packages/gnupg.scm index 0a6eba236c..1e9d814889 100644 --- a/gnu/packages/gnupg.scm +++ b/gnu/packages/gnupg.scm @@ -414,12 +414,7 @@ decrypt messages using the OpenPGP format by making use of GPGME.") (license license:lgpl2.1+))) (define-public python2-pygpgme - (let ((base (package-with-python2 python-pygpgme))) - (package - (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-pygpgme)) (define-public python-gnupg (package diff --git a/gnu/packages/gnuzilla.scm b/gnu/packages/gnuzilla.scm index 3b00d3c717..f7a8c7db51 100644 --- a/gnu/packages/gnuzilla.scm +++ b/gnu/packages/gnuzilla.scm @@ -403,6 +403,7 @@ standards.") "modules/zlib" "modules/libbz2" "ipc/chromium/src/third_party/libevent" + "media/libjpeg" "media/libvpx" "security/nss" "gfx/cairo" @@ -432,6 +433,7 @@ standards.") ("hunspell" ,hunspell) ("libcanberra" ,libcanberra) ("libgnome" ,libgnome) + ("libjpeg-turbo" ,libjpeg-turbo) ("libxft" ,libxft) ("libevent" ,libevent) ("libxinerama" ,libxinerama) @@ -497,6 +499,7 @@ standards.") ;; Avoid bundled libraries. "--with-system-zlib" "--with-system-bz2" + "--with-system-jpeg" ; must be libjpeg-turbo "--with-system-libevent" "--with-system-libvpx" "--with-system-icu" @@ -517,16 +520,6 @@ standards.") ;; Network Graphics (PNG) format"; ;; we probably do not wish to support it. ;; "--with-system-png" - - ;; Fails with "libjpeg-turbo JCS_EXTENSIONS - ;; required". - ;; According to - ;; http://sourceforge.net/projects/libjpeg-turbo/ , - ;; "libjpeg-turbo is a derivative of libjpeg that - ;; uses MMX, SSE, SSE2, and NEON SIMD instructions - ;; to accelerate baseline JPEG compression/ - ;; decompression", so we had better not use it - ;; "--with-system-jpeg" ) #:modules ((ice-9 ftw) diff --git a/gnu/packages/gstreamer.scm b/gnu/packages/gstreamer.scm index 5fe84ec2fc..86ea690e8b 100644 --- a/gnu/packages/gstreamer.scm +++ b/gnu/packages/gstreamer.scm @@ -4,6 +4,7 @@ ;;; Copyright © 2015, 2016 Sou Bunnbu <iyzsong@gmail.com> ;;; Copyright © 2015 Mark H Weaver <mhw@netris.org> ;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2016 Leo Famulari <leo@famulari.name> ;;; ;;; This file is part of GNU Guix. ;;; @@ -207,6 +208,10 @@ for the GStreamer multimedia library.") (uri (string-append "https://gstreamer.freedesktop.org/src/" name "/" name "-" version ".tar.xz")) + (patches (search-patches "gst-plugins-good-flic-bounds-check.patch" + "gst-plugins-good-fix-signedness.patch" + "gst-plugins-good-fix-invalid-read.patch" + "gst-plugins-good-fix-crashes.patch")) (sha256 (base32 "1hkcap9l2603266gyi6jgvx7frbvfmb7xhfhjizbczy1wykjwr57")))) diff --git a/gnu/packages/gtk.scm b/gnu/packages/gtk.scm index 078df07235..224e33e711 100644 --- a/gnu/packages/gtk.scm +++ b/gnu/packages/gtk.scm @@ -100,6 +100,7 @@ tools have full access to view and control running applications.") (define-public cairo (package (name "cairo") + (replacement cairo/fixed) (version "1.14.6") (source (origin (method url-fetch) @@ -153,6 +154,10 @@ affine transformation (scale, rotation, shear, etc.).") (package (inherit cairo) (name "cairo-xcb") + (source (origin + (inherit (package-source cairo)) + (patches (search-patches "cairo-CVE-2016-9082.patch")))) + (replacement #f) (inputs `(("mesa" ,mesa) ,@(package-inputs cairo))) @@ -162,6 +167,13 @@ affine transformation (scale, rotation, shear, etc.).") '("--enable-xlib-xcb" "--enable-gl" "--enable-egl"))) (synopsis "2D graphics library (with X11 support)"))) +(define cairo/fixed + (package + (inherit cairo) + (source (origin + (inherit (package-source cairo)) + (patches (search-patches "cairo-CVE-2016-9082.patch")))))) + (define-public harfbuzz (package (name "harfbuzz") diff --git a/gnu/packages/image-viewers.scm b/gnu/packages/image-viewers.scm new file mode 100644 index 0000000000..4be0ebbc2d --- /dev/null +++ b/gnu/packages/image-viewers.scm @@ -0,0 +1,78 @@ +;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il> +;;; +;;; GNU Guix is free software; you can redistribute it and/or modify it +;;; under the terms of the GNU General Public License as published by +;;; the Free Software Foundation; either version 3 of the License, or (at +;;; your option) any later version. +;;; +;;; GNU Guix is distributed in the hope that it will be useful, but +;;; WITHOUT ANY WARRANTY; without even the implied warranty of +;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +;;; GNU General Public License for more details. +;;; +;;; You should have received a copy of the GNU General Public License +;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. + +(define-module (gnu packages image-viewers) + #:use-module ((guix licenses) #:prefix license:) + #:use-module (guix download) + #:use-module (guix packages) + #:use-module (guix build-system gnu) + #:use-module (gnu packages autotools) + #:use-module (gnu packages base) + #:use-module (gnu packages geeqie) + #:use-module (gnu packages glib) + #:use-module (gnu packages gnome) + #:use-module (gnu packages gtk) + #:use-module (gnu packages pkg-config)) + +(define-public viewnior + (package + (name "viewnior") + (version "1.6") + (source + (origin + (method url-fetch) + (uri (string-append "https://github.com/xsisqox/Viewnior/archive/" + name "-" version ".tar.gz")) + (sha256 + (base32 + "18309qjgwak3kn228z3p3nx7yxasqgzx69v3rgc23hf161nky0c9")))) + (build-system gnu-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'autogen + (lambda _ + (zero? (system* "sh" "autogen.sh"))))))) + (native-inputs + `(("automake" ,automake) + ("autoconf" ,autoconf) + ("intltool" ,intltool) + ("glib" ,glib "bin") ; glib-genmarshal + ("gnome-common" ,gnome-common) + ("libtool" ,libtool) + ("pkg-config" ,pkg-config) + ("shared-mime-info" ,shared-mime-info) + ("which" ,which))) + (inputs + `(("exiv2" ,exiv2) + ("gdk-pixbuf" ,gdk-pixbuf) + ("gtk+-2" ,gtk+-2))) + (home-page "http://siyanpanayotov.com/project/viewnior/") + (synopsis "Simple, fast and elegant image viewer") + (description "Viewnior is an image viewer program. Created to be simple, +fast and elegant. Its minimalistic interface provides more screenspace for +your images. Among its features are: +@enumerate +@item Fullscreen & Slideshow +@item Rotate, flip, crop, save, delete images +@item Animation support +@item Browse only selected images +@item Navigation window +@item Set image as wallpaper (Gnome 2, Gnome 3, XFCE, LXDE, FluxBox, Nitrogen) +@item Simple interface +@item EXIF and IPTC metadata +@item Configurable mouse actions +@end enumerate\n") + (license license:gpl3+))) diff --git a/gnu/packages/image.scm b/gnu/packages/image.scm index 611ac71572..8aebfc57f1 100644 --- a/gnu/packages/image.scm +++ b/gnu/packages/image.scm @@ -31,6 +31,7 @@ (define-module (gnu packages image) #:use-module (gnu packages) #:use-module (gnu packages algebra) + #:use-module (gnu packages assembly) #:use-module (gnu packages autotools) #:use-module (gnu packages boost) #:use-module (gnu packages compression) @@ -824,15 +825,15 @@ convert, manipulate, filter and display a wide variety of image formats.") (define-public jasper (package (name "jasper") - (version "1.900.29") + (version "2.0.0") (source (origin (method url-fetch) (uri (string-append "https://www.ece.uvic.ca/~frodo/jasper" "/software/jasper-" version ".tar.gz")) (sha256 (base32 - "1h1575wdzq1p7y2xvy1gbiypai1iils5awhy4gadr78qpb9ykrra")))) - (build-system gnu-build-system) + "1kg5yrdwgazhbczybyx4548m0ijssabcp8hl5l87w78z833vikks")))) + (build-system cmake-build-system) (inputs `(("libjpeg" ,libjpeg))) (synopsis "JPEG-2000 library") (description "The JasPer Project is an initiative to provide a reference @@ -997,3 +998,33 @@ also converts external formats (BMP, GIF, PNM and TIFF) to optimized PNG, and performs PNG integrity checks and corrections.") (home-page "http://optipng.sourceforge.net/") (license license:zlib))) + +(define-public libjpeg-turbo + (package + (name "libjpeg-turbo") + (version "1.5.1") + (source (origin + (method url-fetch) + (uri (string-append "mirror://sourceforge/" name "/" version "/" + name "-" version ".tar.gz")) + (sha256 + (base32 + "0v365hm6z6lddcqagjj15wflk66rqyw75m73cqzl65rh4lyrshj1")))) + (build-system gnu-build-system) + (native-inputs + `(("nasm" ,nasm))) + (arguments + `(#:test-target "test")) + (home-page "http://www.libjpeg-turbo.org/") + (synopsis "SIMD-accelerated JPEG image handling library") + (description "libjpeg-turbo is a JPEG image codec that accelerates baseline +JPEG compression and decompression using SIMD instructions: MMX on x86, SSE2 on +x86-64, NEON on ARM, and AltiVec on PowerPC processors. Even on other systems, +its highly-optimized Huffman coding routines allow it to outperform libjpeg by +a significant amount. +libjpeg-turbo implements both the traditional libjpeg API and the less powerful +but more straightforward TurboJPEG API, and provides a full-featured Java +interface. It supports color space extensions that allow it to compress from +and decompress to 32-bit and big-endian pixel buffers (RGBX, XBGR, etc.).") + (license (list license:bsd-3 ; jsimd*.[ch] and most of simd/ + license:ijg)))) ; the rest diff --git a/gnu/packages/imagemagick.scm b/gnu/packages/imagemagick.scm index 99d8b76299..4e70212133 100644 --- a/gnu/packages/imagemagick.scm +++ b/gnu/packages/imagemagick.scm @@ -43,14 +43,14 @@ (define-public imagemagick (package (name "imagemagick") - (version "6.9.6-5") + (version "6.9.6-6") (source (origin (method url-fetch) (uri (string-append "mirror://imagemagick/ImageMagick-" version ".tar.xz")) (sha256 (base32 - "037lg2m0y5b17lyi34jdlkq4h03ck67j5m6wr84nvwd3jfx240cd")))) + "02hd0xvpm99wrix2didg8xnra4fla04y9vaks2vnijry3l0gxlcw")))) (build-system gnu-build-system) (arguments `(#:configure-flags '("--with-frozenpaths" "--without-gcc-arch") diff --git a/gnu/packages/kde-frameworks.scm b/gnu/packages/kde-frameworks.scm index 9df37ac38d..8b841330b8 100644 --- a/gnu/packages/kde-frameworks.scm +++ b/gnu/packages/kde-frameworks.scm @@ -55,7 +55,7 @@ (define-public extra-cmake-modules (package (name "extra-cmake-modules") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -64,13 +64,18 @@ name "-" version ".tar.xz")) (sha256 (base32 - "0n7vw2a4kxdgpsc1wn9f1d0y01p6qfk8ac360rq329bvdpigxmnj")))) + "0yi60qd08x5093wb8dv9cx370iaabn44hzcang92g9ssfmz0zd2h")))) (build-system cmake-build-system) (native-inputs `(("qtbase" ,qtbase))) ; For tests (needs qmake) (arguments `(#:phases (modify-phases %standard-phases + (add-after 'unpack 'fix-lib-path + (lambda _ + ;; Always install into /lib and not into /lib64. + (substitute* "kde-modules/KDEInstallDirs.cmake" + (("\"lib64\"") "\"lib\"")))) ;; install and check phase are swapped to prevent install from failing ;; after testsuire has run (add-after 'install 'check-post-install @@ -185,7 +190,7 @@ common build settings used in software produced by the KDE community.") (define-public attica (package (name "attica") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -194,7 +199,7 @@ common build settings used in software produced by the KDE community.") name "-" version ".tar.xz")) (sha256 (base32 - "0w6dwq83vj70m8rf52x60a64f6s6h0y7c948j3hddfql7s3ghha7")))) + "14v6vi8awk1m58l9svpjd54ckd6milzavgfbkdspsz0km1cpqlks")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules))) @@ -217,7 +222,7 @@ http://freedesktop.org/wiki/Specifications/open-collaboration-services/") (define-public bluez-qt (package (name "bluez-qt") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -226,7 +231,7 @@ http://freedesktop.org/wiki/Specifications/open-collaboration-services/") name "-" version ".tar.xz")) (sha256 (base32 - "111gqxw1bvazdhxk5rcfhi438i6bd92r3wvlkxsdqrp7ypcqdpig")))) + "1rfzwrvvkc5f4l943f4r235gdniqc7njyw4fx36v00daj2r4aqi9")))) (build-system cmake-build-system) (native-inputs `(("dbus" ,dbus) @@ -251,7 +256,7 @@ Bluetooth stack. It is used by the KDE Bluetooth stack, BlueDevil.") (define-public breeze-icons (package (name "breeze-icons") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -260,7 +265,7 @@ Bluetooth stack. It is used by the KDE Bluetooth stack, BlueDevil.") name "-" version ".tar.xz")) (sha256 (base32 - "12awfvka9sgdgh7dyg7cw7myw7fxrx1w93s1gyhdq2drjsdbghgz")))) + "06zwg2g0157ac6xsgxs5f8s1sk8rh2j3y057iqmfg2ng2sh9byh2")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) @@ -285,7 +290,7 @@ It is the default icon theme for the KDE Plasma 5 desktop.") (define-public kapidox (package (name "kapidox") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -294,7 +299,7 @@ It is the default icon theme for the KDE Plasma 5 desktop.") name "-" version ".tar.xz")) (sha256 (base32 - "193m0qpcqdkspdcwc8cwabjjcqyd9d0m5kl53mycyiv1m220x11l")))) + "1whkl9rzhjnnmpj532d23mlrwhp5wcfxfvq4z4bxyr64g9plbzyq")))) (build-system cmake-build-system) (arguments `(#:tests? #f)) ; has no test target @@ -327,7 +332,7 @@ documentation.") (define-public karchive (package (name "karchive") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -336,7 +341,7 @@ documentation.") name "-" version ".tar.xz")) (sha256 (base32 - "1c7bifmzyr398p1qx9qfxp893wbr44sjn3sda9q0hdpmw2i7yf3z")))) + "1s068z0ih6qk3m4lm10wm28y0nq5qwn4gpnx9vckar51xbrl4bb7")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules))) @@ -361,7 +366,7 @@ GZip format, via a subclass of QIODevice.") (define-public kcodecs (package (name "kcodecs") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -370,7 +375,7 @@ GZip format, via a subclass of QIODevice.") name "-" version ".tar.xz")) (sha256 (base32 - "0f4k276sm0svh5y8yyq8hfc5vy60cpsrwany7kswyh22m57v5j8a")))) + "0r01raiva4iddiz5qqshmbmidgkf4q6illanz6zwmc4n66c6s3q3")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) @@ -396,7 +401,7 @@ Internet).") (define-public kconfig (package (name "kconfig") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -405,7 +410,7 @@ Internet).") name "-" version ".tar.xz")) (sha256 (base32 - "18dpm0r4nnvmxrask6rv5dkniwna9hh72ffdnvjgrh8p5djs9szi")))) + "0kdsaqv880wihxv6il8wailmymh0rh0jrbhg8iz2ljf3ir7g56zy")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) @@ -463,7 +468,7 @@ propagate their changes to their respective configuration files.") (define-public kcoreaddons (package (name "kcoreaddons") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -472,7 +477,7 @@ propagate their changes to their respective configuration files.") name "-" version ".tar.xz")) (sha256 (base32 - "0rzpxajv041kdbk92rwxq1qnvzyrxfjy154d8257yj2fj76w1gnw")))) + "10x2sgd1acsg1kmb741zk8sbss1j9nncfr1ac2pq0fc236ivkiyb")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) @@ -502,7 +507,7 @@ many more.") (define-public kdbusaddons (package (name "kdbusaddons") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -511,7 +516,7 @@ many more.") name "-" version ".tar.xz")) (sha256 (base32 - "1vgdl9z5xyfr2b5z7n2vdh0s6zab6ccxp30p1cy8hhhrsf04663m")))) + "07mzb1xr8wyiid25p8kg6mjp6vq8ngvv1ikhq75zvd2cbax530c8")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) @@ -538,7 +543,7 @@ as well as an API to create KDED modules.") (define-public kdnssd (package (name "kdnssd") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -547,7 +552,7 @@ as well as an API to create KDED modules.") name "-" version ".tar.xz")) (sha256 (base32 - "0dq2i4f4ny5cwgd41mjw5i7cf23ns55s2m13cjvxvy90nwhlymqp")))) + "1gkqfcz8glfa6krbayaay4kyq3zazcyr21zjg78la76vfnranh0r")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) @@ -565,7 +570,7 @@ infrastructure.") (define-public kguiaddons (package (name "kguiaddons") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -574,7 +579,7 @@ infrastructure.") name "-" version ".tar.xz")) (sha256 (base32 - "1skvlcj0fgb4am02vlm4fyd52f9yn4y0aj5arcfz3qps5cjzr6xg")))) + "1f3k6g8cqgq49ka9wsfflp0vnqgk81nlp012lb5v875yil6f9m3f")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) @@ -597,7 +602,7 @@ interfaces in the areas of colors, fonts, text, images, keyboard input.") (define-public ki18n (package (name "ki18n") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -606,7 +611,7 @@ interfaces in the areas of colors, fonts, text, images, keyboard input.") name "-" version ".tar.xz")) (sha256 (base32 - "0a66z325bvdv7g6ysml2bf8559nkjhv2fxwj1ja6vsxkn95d54ff")))) + "0ymg8mnpvas101war3pgm3wv8ssf1wxa6mxg9ym1xx24mx7xzhzw")))) (build-system cmake-build-system) (propagated-inputs `(("gettext" ,gettext-minimal) @@ -640,7 +645,7 @@ translation scripting.") (define-public kidletime (package (name "kidletime") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -649,7 +654,7 @@ translation scripting.") name "-" version ".tar.xz")) (sha256 (base32 - "1cv6d2vylz7vymn4v0brv2jp1kzscvm9wh1ylp3wyi1jqyblgjfw")))) + "0cwq8jvsimxriiazivls8yix9jyglk2giqwv34a1ic1cnackhwq7")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules))) @@ -667,7 +672,7 @@ or user activity.") (define-public kitemmodels (package (name "kitemmodels") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -676,7 +681,7 @@ or user activity.") name "-" version ".tar.xz")) (sha256 (base32 - "00qgp5i35r7k9gy43wypn9fa7zxiqqip89dzbw8r6rabinihqzy2")))) + "0zi7wsqcmjd7fms8r2vqvwwvzw75p275qyn6whpgblb09l0pn78z")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) @@ -728,7 +733,7 @@ model to observers (define-public kitemviews (package (name "kitemviews") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -737,7 +742,7 @@ model to observers name "-" version ".tar.xz")) (sha256 (base32 - "1469i10y2c3i1pdhzl9nk177y4n1mlc7p5w7kivdcrvf9ilxvbkx")))) + "0wrlwawgnz1yjav4hfirc3lcki0hqy0cgr8bwhr9nhm27ndgv28p")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) @@ -769,7 +774,7 @@ to flat and hierarchical lists.") (define-public kplotting (package (name "kplotting") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -778,7 +783,7 @@ to flat and hierarchical lists.") name "-" version ".tar.xz")) (sha256 (base32 - "1qp9q8g9yxy359bylyqyqxjq9wjismajrg4xhxx5xn4s6znyrxny")))) + "1vmwxj03qhrfnz3jg30ka28afpqg0hlgm46dbzyg86kg8hc2hgb2")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) @@ -804,10 +809,61 @@ data being plotted. KPlotWidget automatically converts everything to screen pixel units.") (license license:lgpl2.1+))) +(define-public ksyntaxhighlighting + (package + (name "ksyntaxhighlighting") + (version "5.28.0") + (source (origin + (method url-fetch) + (uri (string-append + "mirror://kde/stable/frameworks/" + (version-major+minor version) "/" + "syntax-highlighting-" version ".tar.xz")) + (sha256 + (base32 + "0gf1ldlk4gav6bg5b1231hphaal4simyngirvr1yizcb1rrlygdy")))) + (build-system cmake-build-system) + (native-inputs + `(("extra-cmake-modules" ,extra-cmake-modules) + ("perl" ,perl) + ;; Optional, for compile-time validation of syntax definition files: + ("qtxmlpatterns" ,qtxmlpatterns))) + (inputs + `(("qtbase" ,qtbase))) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'patch-source-shebangs 'unpatch-source-shebang + (lambda _ + ;; revert the patch-shebang phase on scripts which are + ;; in fact test data + (substitute* '("autotests/input/test.bash" + "autotests/folding/test.bash.fold") + (((which "bash")) "/bin/bash")) + (substitute* '("autotests/input/highlight.sh" + "autotests/folding/highlight.sh.fold") + (((which "sh")) " /bin/sh")) ;; space in front! + (substitute* '("autotests/input/highlight.pl" + "autotests/folding/highlight.pl.fold") + (((which "perl")) "/usr/bin/perl")) + #t)) + (add-before 'check 'check-setup + (lambda _ + (setenv "CTEST_OUTPUT_ON_FAILURE" "1") ; enable debug info + #t))))) + (home-page "https://community.kde.org/Frameworks") + (synopsis "Syntax highlighting engine for Kate syntax definitions") + (description "This is a stand-alone implementation of the Kate syntax +highlighting engine. It's meant as a building block for text editors as well +as for simple highlighted text rendering (e.g. as HTML), supporting both +integration with a custom editor as well as a ready-to-use +@code{QSyntaxHighlighter} sub-class.") + (license license:lgpl2.1+))) + (define-public kwayland (package (name "kwayland") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -816,7 +872,7 @@ pixel units.") name "-" version ".tar.xz")) (sha256 (base32 - "0va1kmki2xr4mx2918h333mfkqs5v1mhbzyf71hq190izdz0jdss")))) + "0xm4agsv8hyx8aaiv4zpa121s08ayhbps3pbfbds2ckk57k6ba8k")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) @@ -846,7 +902,7 @@ represented by a QPoint or a QSize.") (define-public kwidgetsaddons (package (name "kwidgetsaddons") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -855,7 +911,7 @@ represented by a QPoint or a QSize.") name "-" version ".tar.xz")) (sha256 (base32 - "0p9gxna7y7nigpi0ri7k45g4pf1svq0kxrhk4wf7rj58rilhcfrl")))) + "1p22s1cbwpwbm03qxs0wqb1i7w1s19b119diwkmb8xl90cqfdwnn")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) @@ -894,7 +950,7 @@ configuration pages, message boxes, and password requests.") (define-public kwindowsystem (package (name "kwindowsystem") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -903,7 +959,7 @@ configuration pages, message boxes, and password requests.") name "-" version ".tar.xz")) (sha256 (base32 - "0w49lpwicl71gyyf2aisvmfjpvjl3w1rqpx4a42ph0aywjihjmhx")))) + "0lzafiwj58gg5vccnvwrhiwjq67y8cn3gllirgw13vz3f69sbr3i")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) @@ -934,7 +990,7 @@ lower level classes for interaction with the X Windowing System.") (define-public modemmanager-qt (package (name "modemmanager-qt") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -943,7 +999,7 @@ lower level classes for interaction with the X Windowing System.") name "-" version ".tar.xz")) (sha256 (base32 - "1zw5frscvbsp0jpb071ssqgvm097ylw3zy69y7f0dybhps6lv2jv")))) + "1yfqqp596srvsi0yqrkpm5gzlwjf4szk6hy0wszr12gjjzqprilq")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) @@ -972,7 +1028,7 @@ messages.") (define-public networkmanager-qt (package (name "networkmanager-qt") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -981,7 +1037,7 @@ messages.") name "-" version ".tar.xz")) (sha256 (base32 - "0fnj0b2j4v51f12b3v59psdza2krdkidj22b9a9jwn224lg4852y")))) + "1iq8xrw55k2k9af57l4lfrw72gjxgk7pp7k3m7amjfp0hdqw8602")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) @@ -1011,7 +1067,7 @@ which are used in DBus communication.") (define-public oxygen-icons (package (name "oxygen-icons") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -1020,7 +1076,7 @@ which are used in DBus communication.") name "5" "-" version ".tar.xz")) (sha256 (base32 - "1lb09ykj5ayj5lv7w2k2pqis7z61clr3gkinf6n7jghnlc96222g")))) + "05bypc4k86lsjp7d4lpbpsnms7k1gnjyahdbks420585ca0v4qkp")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) @@ -1030,12 +1086,13 @@ which are used in DBus communication.") (home-page "https://community.kde.org/Frameworks") (synopsis "Oxygen provides the standard icon theme for the KDE desktop") (description "Oxygen icon theme for the KDE desktop") - (license license:lgpl3+))) + (license license:lgpl3+) + (properties '((upstream-name . "oxygen-icons5"))))) (define-public solid (package (name "solid") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -1044,7 +1101,7 @@ which are used in DBus communication.") name "-" version ".tar.xz")) (sha256 (base32 - "01qlfj30n8sr8xd8l8fimg7hs7h70ynhalk2m9l8dz2qay2pdl27")))) + "0g6frc7hckbkvzgq40qrymllgp56a3v39l5d2ajqipwb4kabhdpy")))) (build-system cmake-build-system) (native-inputs `(("bison" ,bison) @@ -1068,7 +1125,7 @@ system.") (define-public sonnet (package (name "sonnet") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -1077,7 +1134,7 @@ system.") name "-" version ".tar.xz")) (sha256 (base32 - "07i3gng309vsf5kp5dlwca0lpi3iqc0lp0ixdvx75q832gk8ivrv")))) + "1vzn3kvi126jnkq2s5110yii8946kaxp452735fx0l0jqjn92dy8")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) @@ -1094,7 +1151,7 @@ ASpell and HUNSPELL.") (define-public threadweaver (package (name "threadweaver") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -1103,7 +1160,7 @@ ASpell and HUNSPELL.") name "-" version ".tar.xz")) (sha256 (base32 - "0mg5i125b008x6162a5h2q14fg81m17md00017n09xljw3099kqy")))) + "10hy4pvw84l2z8778gsfv5i8pqrfjidvlgd5rc8xffx65s3f28b5")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules))) @@ -1124,7 +1181,7 @@ uses a job-based interface to queue tasks and execute them in an efficient way." (define-public kauth (package (name "kauth") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -1133,7 +1190,7 @@ uses a job-based interface to queue tasks and execute them in an efficient way." name "-" version ".tar.xz")) (sha256 (base32 - "17z6dh1qdpd490z84g6ynl8bcrr9naalvh34ybnpipvx3qs50kwl")))) + "09m7dipkykw75dbka6mhsvrikbniwshl1l0qxcny3ywc0fkzgf40")))) (build-system cmake-build-system) (native-inputs `(("dbus" ,dbus) @@ -1146,6 +1203,17 @@ uses a job-based interface to queue tasks and execute them in an efficient way." (arguments `(#:phases (modify-phases %standard-phases + (add-after 'unpack 'fix-cmake-install-directories + (lambda _ + ;; Make packages using kauth put their policy files and helpers + ;; into their own prefix. + (substitute* "KF5AuthConfig.cmake.in" + (("@KAUTH_POLICY_FILES_INSTALL_DIR@") + "${KDE_INSTALL_DATADIR}/polkit-1/actions") + (("@KAUTH_HELPER_INSTALL_DIR@") + "${KDE_INSTALL_LIBEXECDIR}") + (("@KAUTH_HELPER_INSTALL_ABSOLUTE_DIR@") + "${KDE_INSTALL_LIBEXECDIR}")))) (replace 'check (lambda _ (setenv "DBUS_FATAL_WARNINGS" "0") @@ -1160,7 +1228,7 @@ utilities.") (define-public kcompletion (package (name "kcompletion") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -1169,7 +1237,7 @@ utilities.") name "-" version ".tar.xz")) (sha256 (base32 - "1mb64ii4ilhqhy9p6cl3phs17bg3lr4b60jkkm71yn2wnd4wl47s")))) + "1yrlhf6n7xlkid3xbpirf8n6kybc3sqp5fnb01kr1rcl89qs273f")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) @@ -1196,7 +1264,7 @@ integrated it into your application's other widgets.") (define-public kcrash (package (name "kcrash") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -1205,7 +1273,7 @@ integrated it into your application's other widgets.") name "-" version ".tar.xz")) (sha256 (base32 - "09wf4dzckc9l8dyl8qs1wc54h4rm38i2blzyyicm4iazi420lysk")))) + "0gsly5wvyh0d6yfk5yyv1pgaazwlwvahz245y9sliwzrbxhgj1yv")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) @@ -1234,7 +1302,7 @@ application crashes.") (define-public kdoctools (package (name "kdoctools") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -1243,7 +1311,7 @@ application crashes.") name "-" version ".tar.xz")) (sha256 (base32 - "1hgg19da0918mx8z2614qljvj9j8bny78mwlyljf42814f3ycpam")))) + "1mndmxy7vgdkii8axzkzclqqimg0ksn2dmwiqsljcjcik0zfx47c")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules))) @@ -1282,7 +1350,7 @@ from DocBook files.") (define-public kfilemetadata (package (name "kfilemetadata") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -1291,7 +1359,7 @@ from DocBook files.") name "-" version ".tar.xz")) (sha256 (base32 - "1la6h05izgnps10py2gcn4xnwz3fm7dyswib57flc8phzipxbg5q")))) + "0sxifxzyqq0haxfira8ldq9gwali7p5vbbh8jslj8wlxm0dczyw6")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) @@ -1312,7 +1380,7 @@ by applications to write metadata.") (define-public kimageformats (package (name "kimageformats") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -1321,7 +1389,7 @@ by applications to write metadata.") name "-" version ".tar.xz")) (sha256 (base32 - "0ijy7di9p37l6fjrmsday402vq4zibq1m37jghkvdymawxcrd22h")))) + "1h17jm55r9ijmng5mb1w9nqk2hw6h965j9c2nrd8wl9dzy616kra")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) @@ -1349,7 +1417,7 @@ formats.") (define-public kjobwidgets (package (name "kjobwidgets") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -1358,7 +1426,7 @@ formats.") name "-" version ".tar.xz")) (sha256 (base32 - "05c6jzl2a37bfz5i7hzsjmrhh8ajx1gbz7j05wgal811m5m4ww8l")))) + "0xh62bjd6qqbmx1jbv9qac1ng0h056mwrs8rkdqd8k10ghmsfx6a")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) @@ -1377,7 +1445,7 @@ asynchronous jobs.") (define-public knotifications (package (name "knotifications") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -1386,7 +1454,7 @@ asynchronous jobs.") name "-" version ".tar.xz")) (sha256 (base32 - "09v122nxfgqjzr2azfn2nh4q9l22i5wnsz9prs0i7s3m7y0d7pxn")))) + "1a55c0abs9yg7qaajgidj8bmfbwkysf24300532lnia71n1ms25s")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) @@ -1420,7 +1488,7 @@ covers feedback and persistent events.") (define-public kpackage (package (name "kpackage") - (version "5.27.0") + (version "5.28.1") (source (origin (method url-fetch) (uri (string-append @@ -1429,7 +1497,7 @@ covers feedback and persistent events.") name "-" version ".tar.xz")) (sha256 (base32 - "0y07zh8ryibm69ljp9f169qfal6r4lngz1ljxgrr6qw15cjkjygk")))) + "0ym5fhhigp7argk7c1zyn2fvfjykgxh3miipidf142c8y3d98vbp")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules))) @@ -1458,7 +1526,7 @@ were traditional plugins.") (define-public kpty (package (name "kpty") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -1467,7 +1535,7 @@ were traditional plugins.") name "-" version ".tar.xz")) (sha256 (base32 - "06pka8cbw6a9rk2j5pkz34rfy10bv6il3wqyf7ala32ynv5rcgc3")))) + "1q22wzx5xpmbj56xg4miiscb1xqqk2lfkljfdi87zl05vwmnc7hn")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules))) @@ -1495,7 +1563,7 @@ and communicating with them using a pty.") (define-public kunitconversion (package (name "kunitconversion") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -1504,7 +1572,7 @@ and communicating with them using a pty.") name "-" version ".tar.xz")) (sha256 (base32 - "11rn6813jz7clb6fjp9nbdg1c350zh0yiprbr053wkdjrb3aca7c")))) + "0n6ndy1yarilnk2l09h92qk32v02hknafif1i9mmwcibldvc963q")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules))) @@ -1528,7 +1596,7 @@ gallons).") (define-public baloo (package (name "baloo") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -1537,7 +1605,7 @@ gallons).") name "-" version ".tar.xz")) (sha256 (base32 - "0dqa5sxz2z440h6zry7s1x0r1d919qky69i5fv2nir7y844xx2cc")))) + "071in785y1qplm59fmsmifzbmczvlvkf5gxdb6d0iw93pb36r7h5")))) (build-system cmake-build-system) (propagated-inputs `(("kcoreaddons" ,kcoreaddons) @@ -1585,7 +1653,7 @@ maintaining an index of the contents of your files.") (define-public kactivities (package (name "kactivities") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -1594,7 +1662,7 @@ maintaining an index of the contents of your files.") name "-" version ".tar.xz")) (sha256 (base32 - "08x07rlf2gff1j9jahznz2838919vab1ay8jppz3bp5kywx104yk")))) + "162ilqcfp8b3lb3gpzbw94ppsdqzn6i6ymiwh12xy5nrxixdpagb")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules))) @@ -1632,7 +1700,7 @@ with other frameworks.") (define-public kactivities-stats (package (name "kactivities-stats") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -1641,7 +1709,7 @@ with other frameworks.") name "-" version ".tar.xz")) (sha256 (base32 - "134a3zgasza9wghp1lkiaar3sakag7vn82pm2kcrmr420a0jigsw")))) + "0pjgjl5bwmq0n23nwcqjp3b412fsibnvwsr3s3l67k9scmdpbm4v")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules))) @@ -1662,7 +1730,7 @@ by which applications, and what documents have been linked to which activity.") (define-public kbookmarks (package (name "kbookmarks") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -1671,7 +1739,7 @@ by which applications, and what documents have been linked to which activity.") name "-" version ".tar.xz")) (sha256 (base32 - "1lb20yn8s27h0965yf6w4v4wwlm80bl24mpsksp01z9f0711j8vm")))) + "1lfvps0xzpzn42n7rpsdcmsiryclykz6h1hk8sp6nsbhqwzd0r65")))) (build-system cmake-build-system) (propagated-inputs `(("kwidgetsaddons" ,kwidgetsaddons))) @@ -1704,7 +1772,7 @@ using the XBEL format.") (define-public kcmutils (package (name "kcmutils") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -1713,7 +1781,7 @@ using the XBEL format.") name "-" version ".tar.xz")) (sha256 (base32 - "04nbd0836azs2i0pq8hq8ljnmfc45mqs022zdn84xd2q3npl3hfx")))) + "0wj3f5ykzb7q9536y9wk8mnfcb6zay2mmc25dg67mdznzwdy36aa")))) (build-system cmake-build-system) (propagated-inputs `(("kconfigwidgets" ,kconfigwidgets) @@ -1743,7 +1811,7 @@ KCModules can be created with the KConfigWidgets framework.") (define-public kconfigwidgets (package (name "kconfigwidgets") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -1752,7 +1820,7 @@ KCModules can be created with the KConfigWidgets framework.") name "-" version ".tar.xz")) (sha256 (base32 - "0sbhirfsjmsxiwaqqh5jh85bhwmij93gj5knnb0bs0al4hy29918")))) + "0cy53jaq15n8hw2m67l0y6x722ywg0ijfz5ak5vq3fjjhc9fmq8d")))) (build-system cmake-build-system) (propagated-inputs `(("kauth" ,kauth) @@ -1784,7 +1852,7 @@ their settings.") (define-public kdeclarative (package (name "kdeclarative") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -1793,7 +1861,7 @@ their settings.") name "-" version ".tar.xz")) (sha256 (base32 - "1a8pqwrwgmzarinhr9xxviqh9417p8icj8lwqg9ly0q0j3yv20dh")))) + "1g7bf3smdiwgfhdzwskp3l7l4bn838q1cdy4hp9mzqdssz956wmn")))) (build-system cmake-build-system) (propagated-inputs `(("kconfig" ,kconfig) @@ -1844,7 +1912,7 @@ that offer bindings to some of the Frameworks.") (define-public kded (package (name "kded") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -1853,7 +1921,7 @@ that offer bindings to some of the Frameworks.") name "-" version ".tar.xz")) (sha256 (base32 - "14f4qxia9p3vynv2ch9rs67zaxn9kpbas0fn0vwag1ikxb8qz0c2")))) + "115ywk3vdyhwzna59bpiqfffcc128vafl823yh5fzkwbp8w7qdn5")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules))) @@ -1877,7 +1945,7 @@ started on demand.") (define-public kdesignerplugin (package (name "kdesignerplugin") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -1886,7 +1954,7 @@ started on demand.") name "-" version ".tar.xz")) (sha256 (base32 - "157lny5v8js63nvw2iyc9j4cinqmyj75a389s46n8wqyygrz5v0v")))) + "12v9pbfniljp23bllxxq6hfv6qnp2q8yjsix6fy6hwf8yrsq42m3")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) @@ -1914,7 +1982,7 @@ ini-style description files.") (define-public kdesu (package (name "kdesu") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -1923,7 +1991,7 @@ ini-style description files.") name "-" version ".tar.xz")) (sha256 (base32 - "1l501z102ygibz4000jnngm0cggh2kaf6hzra1ngv5nxqxzkh31a")))) + "1f6awbnqs14si13n1ryibb0z3mj90bg0vk320hgabd2zxma00vwp")))) (build-system cmake-build-system) (propagated-inputs `(("kpty" ,kpty))) @@ -1945,7 +2013,7 @@ with su and ssh respectively.") (define-public kemoticons (package (name "kemoticons") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -1954,7 +2022,7 @@ with su and ssh respectively.") name "-" version ".tar.xz")) (sha256 (base32 - "0rjw2g3lfdxiy56x61d0sdcmcs8rml6h29a05fp6xww2bqcvr9wq")))) + "10qxm9q7bsbbg419f8d0703mikd8w99a8fh501fpm3sgh6k7pbyv")))) (build-system cmake-build-system) (propagated-inputs `(("kservice" ,kservice))) @@ -1986,7 +2054,7 @@ emoticons coming from different providers.") (define-public kglobalaccel (package (name "kglobalaccel") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -1995,7 +2063,7 @@ emoticons coming from different providers.") name "-" version ".tar.xz")) (sha256 (base32 - "1z2knfxcla1f191cifij1fzw88b076yx6qjxraqfsmkc6g6i2bmj")))) + "0a60f2bs7dhx0rsrgva2p97dcala6jrjfg4z2nv0m4bv82i4kchc")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) @@ -2028,7 +2096,7 @@ window does not need focus for them to be activated.") (define-public kiconthemes (package (name "kiconthemes") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -2037,7 +2105,7 @@ window does not need focus for them to be activated.") name "-" version ".tar.xz")) (sha256 (base32 - "0m70vcrxp0vvqw5grlsn19d2hgdhky8iv2pr0xwzw8v5yrnl1hh2")))) + "1i5cpsqfn1vcch8izbrgig2km580gdxf02qmib4ynbwzcfvrnbqc")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules) @@ -2076,7 +2144,7 @@ in applications using the KDE Frameworks.") (define-public kinit (package (name "kinit") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -2085,7 +2153,7 @@ in applications using the KDE Frameworks.") name "-" version ".tar.xz")) (sha256 (base32 - "0sbpl1sp1ajarjmnvx2l3dr09afsay28kp2sf4yacrm4lrmhwzip")))) + "0hwa4anljh5v53gswziacwr6ryvhp136k6y85d10074lrckdr912")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules))) @@ -2120,7 +2188,7 @@ makes starting KDE applications faster and reduces memory consumption.") (define-public kio (package (name "kio") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -2129,7 +2197,7 @@ makes starting KDE applications faster and reduces memory consumption.") name "-" version ".tar.xz")) (sha256 (base32 - "129sglaw1480v3i1xdyv6k1w3spbj8s00rkdr5mzlcdaqiig69rn")))) + "1hqc88c2idi9fkb7jy82csb0i740lghv0p2fg1gaglcarjdz7nia")))) (build-system cmake-build-system) (propagated-inputs `(("kbookmarks" ,kbookmarks) @@ -2193,7 +2261,7 @@ KIO enabled infrastructure.") (define-public knewstuff (package (name "knewstuff") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -2202,7 +2270,7 @@ KIO enabled infrastructure.") name "-" version ".tar.xz")) (sha256 (base32 - "05ikb7cvyx3cmrrjh2ss6439a49vmzbi3chjj23ffdz2nd2k7r2f")))) + "0p5a6zprqfnhiim0l0qigjy7kky0m4w2nykhllwvr6lda1rg8qs3")))) (build-system cmake-build-system) (propagated-inputs `(("attica" ,attica) @@ -2249,7 +2317,7 @@ specification.") (define-public knotifyconfig (package (name "knotifyconfig") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -2258,7 +2326,7 @@ specification.") name "-" version ".tar.xz")) (sha256 (base32 - "088p19ynjs79zf7mq3gkds93dg72jj8pfya53xyhzdg8s6vyns9n")))) + "0riia9lvp33lqh8ld5r1r0adnfnxikbvmdi4k7kfc4pzra93h10f")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules))) @@ -2291,7 +2359,7 @@ notifications which can be embedded in your application.") (define-public kparts (package (name "kparts") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -2300,7 +2368,7 @@ notifications which can be embedded in your application.") name "-" version ".tar.xz")) (sha256 (base32 - "0rfsyr96s59ljp3jgmcwlvwzbgmlx7fvr62xswwmsnb8ah14k5rh")))) + "1jghgddgz0ghq6n51l1i6jc1s10g0ckda5nlwh4myziv229g9pik")))) (build-system cmake-build-system) (propagated-inputs `(("kio" ,kio) @@ -2341,7 +2409,7 @@ widgets with a user-interface defined in terms of actions.") (define-public kpeople (package (name "kpeople") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -2350,7 +2418,7 @@ widgets with a user-interface defined in terms of actions.") name "-" version ".tar.xz")) (sha256 (base32 - "1w6sbd6djcpv36m9my4drqkrs1l3cryshpz1dx9z8p7afr296n8j")))) + "0dqz6varz3nrnp8jfysdsp2r2mm46hn3vfcqcyyqk3nmv6sd9mpp")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules))) @@ -2384,7 +2452,7 @@ to easily extend the contacts collection.") (define-public krunner (package (name "krunner") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -2393,7 +2461,7 @@ to easily extend the contacts collection.") name "-" version ".tar.xz")) (sha256 (base32 - "1yyxyippmn0d9ycj1hdjvhl1zd31yxwg89a9zwmj8v8gdfr9flj9")))) + "1mmbrpgw090z41l2vg350hmm3ya2qkfkjmq7v5d90jpb7z7y6pr9")))) (build-system cmake-build-system) (propagated-inputs `(("plasma-framework" ,plasma-framework))) @@ -2439,7 +2507,7 @@ typed.") (define-public kservice (package (name "kservice") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -2448,7 +2516,7 @@ typed.") name "-" version ".tar.xz")) (sha256 (base32 - "129bjdr272qkz2inmagy8jnxasifrl4d82x8rp9akfar29qsj6x6")))) + "0mlc3vw0vq1rwcg803dsybzlwxj1n6hg13z9sg0h28wsbyss3l4l")))) (build-system cmake-build-system) (propagated-inputs `(("kconfig" ,kconfig) @@ -2488,7 +2556,7 @@ types or handled by application specific code.") (define-public ktexteditor (package (name "ktexteditor") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -2497,7 +2565,7 @@ types or handled by application specific code.") name "-" version ".tar.xz")) (sha256 (base32 - "127wp4dg72skd6abn2vqffxg91bn59z8yxwy6lxyzvck2pc5v1ss")))) + "1sl152xasbhgpph4f6apkc54b26smgxbd3cxbvch2hfi5cxgb8fq")))) (build-system cmake-build-system) (propagated-inputs `(("kparts" ,kparts))) @@ -2555,7 +2623,7 @@ library.") (define-public ktextwidgets (package (name "ktextwidgets") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -2564,7 +2632,7 @@ library.") name "-" version ".tar.xz")) (sha256 (base32 - "0aq2qx64wylxj5q5sr0dxv9h8bmn725llxyi7iwz31dg2ngfr7m4")))) + "0gwjb0isjfrqd15lvln6bwql1lpk2r1vp5f72zxygz2ay8ar1wxp")))) (build-system cmake-build-system) (propagated-inputs `(("ki18n" ,ki18n) @@ -2600,7 +2668,7 @@ It supports rich text as well as plain text.") (define-public kwallet (package (name "kwallet") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -2609,7 +2677,7 @@ It supports rich text as well as plain text.") name "-" version ".tar.xz")) (sha256 (base32 - "1mlrkzvbqk6r43yqrvv6jsc66brzjd321fp7mg7g3ny47va7hbc2")))) + "0n25mvjwy3sv5bg2x75psz6d6f8yl53j3wfmx9ayh57jk4rq24rm")))) (build-system cmake-build-system) (native-inputs `(("extra-cmake-modules" ,extra-cmake-modules))) @@ -2641,7 +2709,7 @@ the passwords on KDE work spaces.") (define-public kxmlgui (package (name "kxmlgui") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -2650,7 +2718,7 @@ the passwords on KDE work spaces.") name "-" version ".tar.xz")) (sha256 (base32 - "0hf55ip2irbsbg59r36njgb0h5ygpaspa4x6jfyi4bxj852c3hw1")))) + "0plw6fckpssgwf18f5i4vhfp55jmdvfh2rc5lg8fwmlqgqkvrbac")))) (build-system cmake-build-system) (propagated-inputs `(("kconfig" ,kconfig) @@ -2693,7 +2761,7 @@ descriptions for integrating actions from plugins.") (define-public kxmlrpcclient (package (name "kxmlrpcclient") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -2702,7 +2770,7 @@ descriptions for integrating actions from plugins.") name "-" version ".tar.xz")) (sha256 (base32 - "17bavm8qj4r1kc67x5g20v1pl8arjqpn69hg7icp2b1b0vnfvav1")))) + "1xrdh5ipldahcv0pxp7dnzjz1ihnkg4r2hpylg6bwvq81clw8xd1")))) (build-system cmake-build-system) (propagated-inputs `(("kio" ,kio))) @@ -2736,7 +2804,7 @@ setUrl, setUserAgent and call.") (define-public plasma-framework (package (name "plasma-framework") - (version "5.27.0") + (version "5.28.0") (source (origin (method url-fetch) (uri (string-append @@ -2745,7 +2813,7 @@ setUrl, setUserAgent and call.") name "-" version ".tar.xz")) (sha256 (base32 - "11apg7h636dshswikjpz0qkapv8izqjjz47k7vs49x0byp802s5i")))) + "0j4mfd8wzrspvyy281lww981fly2rkbhnixb9b0pj5k9i8gvkh7q")))) (build-system cmake-build-system) (propagated-inputs `(("kpackage" ,kpackage) diff --git a/gnu/packages/key-mon.scm b/gnu/packages/key-mon.scm index c76360ce08..6237a1765a 100644 --- a/gnu/packages/key-mon.scm +++ b/gnu/packages/key-mon.scm @@ -42,8 +42,6 @@ (arguments `(#:python ,python-2 ;uses the Python 2 'print' syntax #:tests? #f)) ;no tests - (native-inputs - `(("python2-setuptools" ,python2-setuptools))) (inputs `(("python2-xlib" ,python2-xlib) ("python2-pygtk" ,python2-pygtk) diff --git a/gnu/packages/ldc.scm b/gnu/packages/ldc.scm index 560fa497fb..6ea7f664bd 100644 --- a/gnu/packages/ldc.scm +++ b/gnu/packages/ldc.scm @@ -29,6 +29,7 @@ #:use-module (gnu packages compression) #:use-module (gnu packages libedit) #:use-module (gnu packages llvm) + #:use-module (gnu packages python) #:use-module (gnu packages textutils) #:use-module (gnu packages zip)) @@ -76,7 +77,7 @@ and freshness without requiring additional information from the user.") (define-public ldc (package (name "ldc") - (version "0.16.1") + (version "0.17.2") (source (origin (method url-fetch) (uri (string-append @@ -85,10 +86,9 @@ and freshness without requiring additional information from the user.") (file-name (string-append name "-" version ".tar.gz")) (sha256 (base32 - "1jvilxx0rpqmkbja4m69fhd5g09697xq7vyqp2hz4hvxmmmv4j40")))) + "0iksl6cvhsiwnlh15b7s9v8f3grxk27jn0vja9n4sad7fvfwmmlc")))) (build-system cmake-build-system) - ;; LDC currently only supports the x86_64 and i686 architectures. - (supported-systems '("x86_64-linux" "i686-linux")) + (supported-systems '("x86_64-linux" "i686-linux" "armhf-linux")) (arguments `(#:phases (modify-phases %standard-phases @@ -127,8 +127,10 @@ and freshness without requiring additional information from the user.") ("tzdata" ,tzdata) ("zlib" ,zlib))) (native-inputs - `(("llvm" ,llvm-3.7) - ("clang" ,clang-3.7) + `(("llvm" ,llvm) + ("clang" ,clang) + ("python-lit" ,python-lit) + ("python-wrapper" ,python-wrapper) ("unzip" ,unzip) ("phobos-src" ,(origin @@ -138,7 +140,7 @@ and freshness without requiring additional information from the user.") version ".tar.gz")) (sha256 (base32 - "0sgdj0536c4nb118yiw1f8lqy5d3g3lpg9l99l165lk9xy45l9z4")) + "07hh3ic3r755mq9hn9gfr0wlc5y8cr91xz2ydb6gqy4zy8jgp5s9")) (patches (search-patches "ldc-disable-tests.patch")))) ("druntime-src" ,(origin @@ -148,7 +150,7 @@ and freshness without requiring additional information from the user.") version ".tar.gz")) (sha256 (base32 - "0z4mkyddx6c4sy1vqgqvavz55083dsxws681qkh93jh1rpby9yg6")))) + "1m1dhday9dl3s04njmd29z7ism2xn2ksb9qlrwzykdgz27b3dk6x")))) ("dmd-testsuite-src" ,(origin (method url-fetch) @@ -157,7 +159,7 @@ and freshness without requiring additional information from the user.") version ".tar.gz")) (sha256 (base32 - "0yc6miidzgl9k33ygk7xcppmfd6kivqj02cvv4fmkbs3qz4yy3z1")))))) + "0n7gvalxwfmia4gag53r9qhcnk2cqrw3n4icj1yri0zkgc27pm60")))))) (home-page "http://wiki.dlang.org/LDC") (synopsis "LLVM compiler for the D programming language") (description diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm index e562213058..2c3c9cf01b 100644 --- a/gnu/packages/linux.scm +++ b/gnu/packages/linux.scm @@ -1198,7 +1198,7 @@ configuration and monitoring interfaces.") (define-public iw (package (name "iw") - (version "4.3") + (version "4.9") (source (origin (method url-fetch) (uri (string-append @@ -1206,7 +1206,7 @@ configuration and monitoring interfaces.") version ".tar.xz")) (sha256 (base32 - "085jyvrxzarvn5jl0fk618jjxy50nqx7ifngszc4jxk6a4ddibd6")))) + "1klpvv98bnx1zm6aqalnri2vd7w80scmdaxr2qnblb6mz82whk1j")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config))) (inputs `(("libnl" ,libnl))) @@ -2664,7 +2664,7 @@ and copy/paste text in the console and in xterm.") (define-public btrfs-progs (package (name "btrfs-progs") - (version "4.8.3") + (version "4.8.4") (source (origin (method url-fetch) (uri (string-append "mirror://kernel.org/linux/kernel/" @@ -2672,7 +2672,7 @@ and copy/paste text in the console and in xterm.") "btrfs-progs-v" version ".tar.xz")) (sha256 (base32 - "1wlflrygnpndppil9g12pk184f75g9qx1lkr0x1gijigglqhr9n1")))) + "1ib1ybpjhcymcycjiraz1vk01qlyvpwcg7mwfhmacdy3cvbfl9mz")))) (build-system gnu-build-system) (outputs '("out" "static")) ; static versions of binaries in "out" (~16MiB!) diff --git a/gnu/packages/lirc.scm b/gnu/packages/lirc.scm index b8fbeb61ba..d4c2d18ccc 100644 --- a/gnu/packages/lirc.scm +++ b/gnu/packages/lirc.scm @@ -134,5 +134,4 @@ on just one button press.") (lambda _ (zero? (system* "make" "py2"))))))) (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ("python2-cython" ,python2-cython)))))) + `(("python2-cython" ,python2-cython)))))) diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index c239c4f00f..8f1f8ee53b 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -479,6 +479,28 @@ geometric models.") single hidden layer, and for multinomial log-linear models.") (license (list license:gpl2+ license:gpl3+)))) +(define-public r-kernlab + (package + (name "r-kernlab") + (version "0.9-25") + (source + (origin + (method url-fetch) + (uri (cran-uri "kernlab" version)) + (sha256 + (base32 + "0qnaq9x3j2xc6jrmmd98wc6hkzch487s4p3a9lnc00xvahkhgpmr")))) + (build-system r-build-system) + (home-page "http://cran.r-project.org/web/packages/kernlab") + (synopsis "Kernel-based machine learning tools") + (description + "This package provides kernel-based machine learning methods for +classification, regression, clustering, novelty detection, quantile regression +and dimensionality reduction. Among other methods @code{kernlab} includes +Support Vector Machines, Spectral Clustering, Kernel PCA, Gaussian Processes +and a QP solver.") + (license license:gpl2))) + (define-public dlib (package (name "dlib") diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm index 9dcaea364c..15aeb9355b 100644 --- a/gnu/packages/mail.scm +++ b/gnu/packages/mail.scm @@ -329,7 +329,7 @@ and corrections. It is based on a Bayesian filter.") (define-public offlineimap (package (name "offlineimap") - (version "7.0.9") + (version "7.0.10") (source (origin (method url-fetch) (uri (string-append "https://github.com/OfflineIMAP/offlineimap/" @@ -337,7 +337,7 @@ and corrections. It is based on a Bayesian filter.") (file-name (string-append name "-" version ".tar.gz")) (sha256 (base32 - "04kapx0ddz7ccwhcjshkml2y916wcan3rl28mpmq25p4gywlkhxf")))) + "0h8mgmwkvwh8x3yam32ipqkzcz4g1dmkbni3v1755lkm0z132m3j")))) (build-system python-build-system) (native-inputs `(("asciidoc" ,asciidoc) @@ -537,14 +537,14 @@ invoking @command{notifymuch} from the post-new hook.") (define-public notmuch (package (name "notmuch") - (version "0.23.2") + (version "0.23.3") (source (origin (method url-fetch) (uri (string-append "https://notmuchmail.org/releases/notmuch-" version ".tar.gz")) (sha256 (base32 - "1g4p5hsrqqbqk6s2w756als60wppvjgpyq104smy3w9vshl7bzgd")))) + "10hqjnl5aavf9clfmx3y832jyz58fplmc3f58pip9dq30b7sap8g")))) (build-system gnu-build-system) (arguments '(#:make-flags (list "V=1") ; Verbose test output. @@ -568,11 +568,6 @@ invoking @command{notifymuch} from the post-new hook.") ;; Patch various inline shell invocations. (substitute* (find-files "test" "\\.sh$") (("/bin/sh") (which "sh"))) - ;; XXX: Some signature verification tests fail with - ;; gnupg-2.1.16, so we skip them. See this thread: - ;; https://notmuchmail.org/pipermail/notmuch/2016/023688.html - (setenv "NOTMUCH_SKIP_TESTS" - "T350-crypto.2 T350-crypto.3 T350-crypto.4 T350-crypto.15") #t))))) (native-inputs `(("bash-completion" ,bash-completion) @@ -938,7 +933,7 @@ facilities for checking incoming mail.") (define-public dovecot (package (name "dovecot") - (version "2.2.25") + (version "2.2.26.0") (source (origin (method url-fetch) @@ -946,7 +941,7 @@ facilities for checking incoming mail.") (version-major+minor version) "/" name "-" version ".tar.gz")) (sha256 (base32 - "0rwn5wc5b8j9fzqcjggdgpzmb77myrf4ra294z1gg5v3hhng7nfq")))) + "01bgj8b2whi35ghbxb19nmr3xvx2zgjzxxw1crgx2v73kprs34pn")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config))) @@ -968,6 +963,15 @@ facilities for checking incoming mail.") "doc/example-config/Makefile.in") (("pkgsysconfdir = .*") "pkgsysconfdir = /tmp/etc")) + #t)) + (add-after + 'unpack 'patch-other-shebangs + (lambda _ + (substitute* + "src/lib-program-client/test-program-client-local.c" + (("/bin/echo") (which "echo")) + (("/bin/cat") (which "cat")) + (("/bin/false") (which "false"))) #t))))) (home-page "http://www.dovecot.org") (synopsis "Secure POP3/IMAP server") @@ -1372,8 +1376,6 @@ maintained.") (let* ((out (assoc-ref outputs "out")) (doc (string-append out "/share/doc/khard"))) (copy-recursively "misc/khard" doc))))))) - (native-inputs - `(("python2-setuptools" ,python2-setuptools))) (propagated-inputs `(("python2-vobject" ,python2-vobject) ("python2-pyyaml" ,python2-pyyaml) @@ -1744,7 +1746,7 @@ for OpenSMTPD to extend its functionality.") (build-system python-build-system) (arguments `(#:tests? #f)) ; Requires mailman running - (inputs + (propagated-inputs `(("python-six" ,python-six) ("python-httplib2" ,python-httplib2))) (home-page "https://launchpad.net/mailman.client") @@ -1752,12 +1754,7 @@ for OpenSMTPD to extend its functionality.") (description "The mailmanclient library provides official Python bindings for the GNU Mailman 3 REST API.") - (properties `((python2-variant . ,(delay python2-mailmanclient)))) (license lgpl3+))) (define-public python2-mailmanclient - (let ((base (package-with-python2 - (strip-python2-variant python-mailmanclient)))) - (package (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools)))))) + (package-with-python2 python-mailmanclient)) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 0c51f6d54f..0ee573527a 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -549,21 +549,29 @@ incompatible with HDF5.") (define-public hdf5 (package (name "hdf5") - (version "1.8.17") + (version "1.8.18") (source (origin (method url-fetch) - (uri (string-append "http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-" - version "/src/hdf5-" - version ".tar.bz2")) + (uri (list (string-append "http://www.hdfgroup.org/ftp/HDF5/releases/" + "hdf5-" version "/src/hdf5-" + version ".tar.bz2") + (string-append "https://support.hdfgroup.org/ftp/HDF5/" + "current" + (apply string-append + (take (string-split version #\.) 2)) + "/src/hdf5-" version ".tar.bz2"))) (sha256 - (base32 "0sj8x0gfs5fb28gipnynb9wpkz113h8wq9sva9mxx66kv27xsdgw")) + (base32 "13542vrnl1p35n8vbq0wzk40vddmm33q5nh04j98c7r1yjnxxih1")) (patches (list (search-patch "hdf5-config-date.patch"))))) (build-system gnu-build-system) (inputs `(("zlib" ,zlib))) (arguments - `(#:phases + `(;; Some of the users, notably Flann, need the C++ interface. + #:configure-flags '("--enable-cxx") + + #:phases (modify-phases %standard-phases (add-before 'configure 'patch-configure (lambda _ diff --git a/gnu/packages/messaging.scm b/gnu/packages/messaging.scm index 72b89067f0..8660915bb0 100644 --- a/gnu/packages/messaging.scm +++ b/gnu/packages/messaging.scm @@ -5,7 +5,7 @@ ;;; Copyright © 2015 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2015, 2016 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2015 Efraim Flashner <efraim@flashner.co.il> -;;; Copyright © 2016 ng0 <ngillmann@runbox.com> +;;; Copyright © 2016 ng0 <ng0@libertad.pw> ;;; Copyright © 2016 Andy Patterson <ajpatter@uwaterloo.ca> ;;; Copyright © 2016 Clément Lassieur <clement@lassieur.org> ;;; @@ -33,6 +33,7 @@ #:use-module (guix build-system gnu) #:use-module (guix build-system glib-or-gtk) #:use-module (guix build-system python) + #:use-module (guix build-system perl) #:use-module (gnu packages) #:use-module (gnu packages aidc) #:use-module (gnu packages autotools) @@ -43,11 +44,13 @@ #:use-module (gnu packages databases) #:use-module (gnu packages documentation) #:use-module (gnu packages enchant) + #:use-module (gnu packages gettext) #:use-module (gnu packages gnome) #:use-module (gnu packages gtk) #:use-module (gnu packages xorg) #:use-module (gnu packages xdisorg) #:use-module (gnu packages libcanberra) + #:use-module (gnu packages man) #:use-module (gnu packages networking) #:use-module (gnu packages libidn) #:use-module (gnu packages lua) @@ -57,6 +60,7 @@ #:use-module (gnu packages pkg-config) #:use-module (gnu packages glib) #:use-module (gnu packages python) + #:use-module (gnu packages pcre) #:use-module (gnu packages perl) #:use-module (gnu packages tcl) #:use-module (gnu packages compression) @@ -67,8 +71,10 @@ #:use-module (gnu packages icu4c) #:use-module (gnu packages qt) #:use-module (gnu packages video) + #:use-module (gnu packages web) #:use-module (gnu packages xiph) #:use-module (gnu packages audio) + #:use-module (gnu packages bison) #:use-module (gnu packages fontutils)) (define-public libotr @@ -859,4 +865,192 @@ into existing applications.") (home-page "https://camaya.net/gloox") (license license:gpl3))) +(define-public perl-net-psyc + (package + (name "perl-net-psyc") + (version "1.1") + (source + (origin + (method url-fetch) + (uri (string-append "http://perlpsyc.psyc.eu/" + "perlpsyc-" version ".zip")) + (file-name (string-append name "-" version ".zip")) + (sha256 + (base32 + "1lw6807qrbmvzbrjn1rna1dhir2k70xpcjvyjn45y35hav333a42")) + ;; psycmp3 currently depends on MP3::List and rxaudio (shareware), + ;; we can add it back when this is no longer the case. + (snippet '(delete-file "contrib/psycmp3")))) + (build-system perl-build-system) + (inputs + `(("perl-curses" ,perl-curses) + ("perl-io-socket-ssl" ,perl-io-socket-ssl))) + (arguments + `(#:phases + (modify-phases %standard-phases + (delete 'configure) ; No configure script + ;; There is a Makefile, but it does not install everything + ;; (leaves out psycion) and says + ;; "# Just to give you a rough idea". XXX: Fix it upstream. + (replace 'build + (lambda _ + (zero? (system* "make" "manuals")))) + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (doc (string-append out "/share/doc/perl-net-psyc")) + (man1 (string-append out "/share/man/man1")) + (man3 (string-append out "/share/man/man3")) + (bin (string-append out "/bin")) + (libpsyc (string-append out "/lib/psyc/ion")) + (libperl (string-append out "/lib/perl5/site_perl/" + ,(package-version perl)))) + + (copy-recursively "lib/perl5" libperl) + (copy-recursively "lib/psycion" libpsyc) + (copy-recursively "bin" bin) + (install-file "cgi/psycpager" (string-append doc "/cgi")) + (copy-recursively "contrib" (string-append doc "/contrib")) + (copy-recursively "hooks" (string-append doc "/hooks")) + (copy-recursively "sdj" (string-append doc "/sdj")) + (install-file "README.txt" doc) + (install-file "TODO.txt" doc) + (copy-recursively "share/man/man1" man1) + (copy-recursively "share/man/man3" man3) + #t))) + (add-after 'install 'wrap-programs + (lambda* (#:key outputs #:allow-other-keys) + ;; Make sure all executables in "bin" find the Perl modules + ;; provided by this package at runtime. + (let* ((out (assoc-ref outputs "out")) + (bin (string-append out "/bin/")) + (path (getenv "PERL5LIB"))) + (for-each (lambda (file) + (wrap-program file + `("PERL5LIB" ":" prefix (,path)))) + (find-files bin "\\.*$")) + #t)))))) + (description + "@code{Net::PSYC} with support for TCP, UDP, Event.pm, @code{IO::Select} and +Gtk2 event loops. This package includes 12 applications and additional scripts: +psycion (a @uref{http://about.psyc.eu,PSYC} chat client), remotor (a control console +for @uref{https://torproject.org,tor} router) and many more.") + (synopsis "Perl implementation of PSYC protocol") + (home-page "http://perlpsyc.psyc.eu/") + (license (list license:gpl2 + (package-license perl) + ;; contrib/irssi-psyc.pl: + license:public-domain + ;; bin/psycplay states AGPL with no version: + license:agpl3+)))) + +(define-public libpsyc + (package + (name "libpsyc") + (version "20160913") + (source (origin + (method url-fetch) + (uri (string-append "http://www.psyced.org/files/" + name "-" version ".tar.xz")) + (sha256 + (base32 + "14q89fxap05ajkfn20rnhc6b1h4i3i2adyr7y6hs5zqwb2lcmc1p")))) + (build-system gnu-build-system) + (native-inputs + `(("perl" ,perl) + ("netcat" ,netcat) + ("procps" ,procps))) + (arguments + `(#:make-flags + (list "CC=gcc" + (string-append "PREFIX=" (assoc-ref %outputs "out"))) + #:phases + (modify-phases %standard-phases + ;; The rust bindings are the only ones in use, the lpc bindings + ;; are in psyclpc. The other bindings are not used by anything, + ;; the chances are high that the bindings do not even work, + ;; therefore we do not include them. + ;; TODO: Get a cargo build system in Guix. + (delete 'configure)))) ; no configure script + (home-page "http://about.psyc.eu/libpsyc") + (description + "@code{libpsyc} is a PSYC library in C which implements +core aspects of PSYC, useful for all kinds of clients and servers +including psyced.") + (synopsis "PSYC library in C") + (license license:agpl3+))) + +;; This commit removes the historic bundled pcre and makes psyclpc reproducible. +(define-public psyclpc + (let* ((commit "61cf9aa81297085e5c40170fd01221c752f8deba") + (revision "2")) + (package + (name "psyclpc") + (version (string-append "20160821-" revision "." (string-take commit 7))) + (source (origin + (method git-fetch) + (uri (git-reference + (url "git://git.psyced.org/git/psyclpc") + (commit commit))) + (file-name (string-append name "-" version "-checkout")) + (sha256 + (base32 + "1viwqymbhn3cwvx0zl58rlzl5gw47zxn0ldg2nbi55ghm5zxl1z5")))) + (build-system gnu-build-system) + (arguments + `(#:tests? #f ; There are no tests/checks. + #:configure-flags + ;; If you have questions about this part, look at + ;; "src/settings/psyced" and the ebuild. + (list + "--enable-use-tls=yes" + "--enable-use-mccp" ; Mud Client Compression Protocol, leave this enabled. + (string-append "--prefix=" + (assoc-ref %outputs "out")) + ;; src/Makefile: Set MUD_LIB to the directory which contains + ;; the mud data. defaults to MUD_LIB = @libdir@ + (string-append "--libdir=" + (assoc-ref %outputs "out") + "/opt/psyced/world") + (string-append "--bindir=" + (assoc-ref %outputs "out") + "/opt/psyced/bin") + ;; src/Makefile: Set ERQ_DIR to directory which contains the + ;; stuff which ERQ can execute (hopefully) savely. Was formerly + ;; defined in config.h. defaults to ERQ_DIR= @libexecdir@ + (string-append "--libexecdir=" + (assoc-ref %outputs "out") + "/opt/psyced/run")) + #:phases + (modify-phases %standard-phases + (add-before 'configure 'chdir-to-src + ;; We need to pass this as env variables + ;; and manually change the directory. + (lambda _ + (chdir "src") + (setenv "CONFIG_SHELL" (which "sh")) + (setenv "SHELL" (which "sh")) + #t))) + #:make-flags (list "install-all"))) + (inputs + `(("zlib" ,zlib) + ("openssl" ,openssl) + ("pcre" ,pcre))) + (native-inputs + `(("pkg-config" ,pkg-config) + ("bison" ,bison) + ("gettext" ,gettext-minimal) + ("help2man" ,help2man) + ("autoconf" ,autoconf) + ("automake" ,automake))) + (home-page "http://lpc.psyc.eu/") + (synopsis "psycLPC is a multi-user network server programming language") + (description + "LPC is a bytecode language, invented to specifically implement +multi user virtual environments on the internet. This technology is used for +MUDs and also the psyced implementation of the Protocol for SYnchronous +Conferencing (PSYC). psycLPC is a fork of LDMud with some new features and +many bug fixes.") + (license license:gpl2)))) + ;;; messaging.scm ends here diff --git a/gnu/packages/mp3.scm b/gnu/packages/mp3.scm index 7f0099ee6d..fa1407f7e4 100644 --- a/gnu/packages/mp3.scm +++ b/gnu/packages/mp3.scm @@ -471,8 +471,7 @@ compression format (.mpc files).") (arguments `(#:python ,python-2)) (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ("python2-nose" ,python2-nose) + `(("python2-nose" ,python2-nose) ("python2-sphinx" ,python2-sphinx) ("python2-coverage" ,python2-coverage))) (synopsis "MP3 tag ID3 metadata editor") diff --git a/gnu/packages/mpd.scm b/gnu/packages/mpd.scm index d3da5f5daa..7b77c11835 100644 --- a/gnu/packages/mpd.scm +++ b/gnu/packages/mpd.scm @@ -257,15 +257,10 @@ information about tracks being played to a scrobbler, such as Libre.FM.") (synopsis "Python MPD client library") (description "Python-mpd2 is a Python library which provides a client interface for the Music Player Daemon.") - (license license:lgpl3+) - (properties `((python2-variant . ,(delay python2-mpd2)))))) + (license license:lgpl3+))) (define-public python2-mpd2 - (let ((mpd2 (package-with-python2 - (strip-python2-variant python-mpd2)))) - (package (inherit mpd2) - (native-inputs `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs mpd2)))))) + (package-with-python2 python-mpd2)) (define-public sonata (package diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm index 64e7455603..febd983023 100644 --- a/gnu/packages/music.scm +++ b/gnu/packages/music.scm @@ -234,7 +234,7 @@ many input formats and provides a customisable Vi-style user interface.") (define-public hydrogen (package (name "hydrogen") - (version "0.9.6.1") + (version "0.9.7") (source (origin (method url-fetch) (uri (string-append @@ -242,7 +242,7 @@ many input formats and provides a customisable Vi-style user interface.") version ".tar.gz")) (sha256 (base32 - "0vxnaqfmcv7hhk0cj67imdcqngspnck7f0wfmvhfgfqa7x1xznll")))) + "1dy2jfkdw0nchars4xi4isrz66fqn53a9qk13bqza7lhmsg3s3qy")))) (build-system cmake-build-system) (arguments `(#:test-target "tests")) @@ -588,11 +588,12 @@ Guile.") (define-public non-sequencer ;; The latest tagged release is three years old and uses a custom build - ;; system, so we take the last commit affecting the "sequencer" directory. - (let ((commit "1d9bd576f6bf7ea240af5f7a60260592750af0dd")) + ;; system, so we take the last commit. + (let ((commit "a22f33f486a5c6f75b60e36f66504c036c0f6f8c") + (revision "2")) (package (name "non-sequencer") - (version (string-append "1.9.5-" (string-take commit 7))) + (version (string-append "1.9.5-" revision "." (string-take commit 7))) (source (origin (method git-fetch) (uri (git-reference @@ -600,7 +601,7 @@ Guile.") (commit commit))) (sha256 (base32 - "0pkkw8q6d55j38xm7r4rwpdv1wy00a44h8c4wrn7vbgpq9nij46y")) + "09q5x8i4f8mqnl8w6xnsq5zriy4bzdl4x2vq9n34a433rfrk84bg")) (file-name (string-append name "-" version "-checkout")))) (build-system waf-build-system) (arguments @@ -638,6 +639,28 @@ Sequencer happens on-line, in real-time. Music can be composed live, while the transport is rolling.") (license license:gpl2+)))) +(define-public non-session-manager + (package (inherit non-sequencer) + (name "non-session-manager") + (arguments + (substitute-keyword-arguments (package-arguments non-sequencer) + ((#:configure-flags flags) + `(cons "--project=session-manager" + (delete "--project=sequencer" ,flags))))) + (inputs + `(("jack" ,jack-1) + ("liblo" ,liblo) + ("ntk" ,ntk))) + (native-inputs + `(("pkg-config" ,pkg-config))) + (home-page "http://non.tuxfamily.org/nsm/") + (synopsis "Audio session management") + (description + "The Non Session Manager is an API and an implementation for audio +session management. NSM clients use a well-specified OSC protocol to +communicate with the session management daemon.") + (license license:gpl2+))) + (define-public solfege (package (name "solfege") @@ -1090,7 +1113,6 @@ Laurens Hammond and Don Leslie.") `(("rapicorn" ,rapicorn) ("guile" ,guile-1.8) ("python" ,python-2) - ("cython" ,python2-cython) ("libgnomecanvas" ,libgnomecanvas) ("libogg" ,libogg) ("libmad" ,libmad) @@ -1101,6 +1123,7 @@ Laurens Hammond and Don Leslie.") (native-inputs `(("pkg-config" ,pkg-config) ("glib:bin" ,glib "bin") + ("cython" ,python2-cython) ("perl" ,perl) ("perl-xml-parser" ,perl-xml-parser))) (home-page "https://testbit.eu/wiki/Beast_Home") @@ -1382,10 +1405,10 @@ using a system-independent interface.") #t))))) (inputs `(("portmidi" ,portmidi) - ("alsa-lib" ,alsa-lib) - ("python-cython" ,python-cython))) + ("alsa-lib" ,alsa-lib))) (native-inputs - `(("unzip" ,unzip))) + `(("python-cython" ,python-cython) + ("unzip" ,unzip))) (home-page "http://portmedia.sourceforge.net/portmidi/") (synopsis "Python bindings to PortMidi") (description @@ -1405,6 +1428,7 @@ using a system-independent interface.") (base32 "1rnk8i8dlshzx16n2qxcsqcs7kywgyazzyzw2vy4vp2gsm9vs9ml")))) (build-system python-build-system) + (arguments `(#:tests? #f)) ; no tests included (inputs `(("lilypond" ,lilypond) ("portmidi" ,portmidi) @@ -1638,14 +1662,14 @@ computer's keyboard.") (define-public qtractor (package (name "qtractor") - (version "0.7.9") + (version "0.8.0") (source (origin (method url-fetch) (uri (string-append "http://downloads.sourceforge.net/qtractor/" "qtractor-" version ".tar.gz")) (sha256 (base32 - "0pp459kfgrnngj373gnwwl43xjz32lmyf7v62p2nnjh6c7wr1ryq")))) + "17v563liyqcvil204ry1qfp09d91944nqz2ig33f5c3pyg4z2427")))) (build-system gnu-build-system) (arguments `(#:tests? #f)) ; no "check" target (inputs @@ -1744,8 +1768,8 @@ analogue-like user interface.") #t))))) (inputs `(("lilv" ,lilv) - ("fftw" ,fftw) - ("fftwf" ,fftwf) + ("fftw" ,fftw-with-threads) + ("fftwf" ,fftwf-with-threads) ("lv2" ,lv2) ("jack" ,jack-1) ("readline" ,readline))) @@ -1796,14 +1820,16 @@ event-based scripts for scrobbling, notifications, etc.") (define-public python-mutagen (package (name "python-mutagen") - (version "1.31") + (version "1.35.1") (source (origin (method url-fetch) (uri (pypi-uri "mutagen" version)) (sha256 (base32 - "16fnnhspniac2i7qswxafawsh2x2a803hmc6bn9k1zl5fxq1380a")))) + "0klk68c1n3285vvm2xzk8ii7mlqp1dxii04askan0gi1wlpagka9")))) (build-system python-build-system) + (native-inputs + `(("python-pytest" ,python-pytest))) (home-page "https://bitbucket.org/lazka/mutagen") (synopsis "Read and write audio tags") (description "Mutagen is a Python module to handle audio metadata. It @@ -1821,14 +1847,18 @@ streams on an individual packet/page level.") (define-public python-musicbrainzngs (package (name "python-musicbrainzngs") - (version "0.5") + (version "0.6") (source (origin (method url-fetch) (uri (pypi-uri "musicbrainzngs" version)) (sha256 (base32 - "12f48llmdf5rkiqxcb70k2k1dmhm8byq0ifazvlrca8dfnmqh4r8")))) + "1dddarpjawryll2wss65xq3v9q8ln8dan7984l5dxzqx88d2dvr8")))) (build-system python-build-system) + (arguments + '(;; The tests fail suffer from race conditions: + ;; https://github.com/alastair/python-musicbrainzngs/issues/211 + #:tests? #f)) (home-page "https://python-musicbrainzngs.readthedocs.org/") (synopsis "Python bindings for MusicBrainz NGS webservice") (description "Musicbrainzngs implements Python bindings of the MusicBrainz @@ -1855,7 +1885,6 @@ MusicBrainz database.") `(;; Python 3 is not supported: ;; https://github.com/echonest/pyechonest/issues/42 #:python ,python-2)) - (native-inputs `(("python2-setuptools" ,python2-setuptools))) (home-page "https://github.com/echonest/pyechonest") (synopsis "Python interface to The Echo Nest APIs") (description "Pyechonest is a Python library for the Echo Nest API. With @@ -1877,13 +1906,13 @@ detailed track info including timbre, pitch, rhythm and loudness information. (define-public python-pylast (package (name "python-pylast") - (version "1.5.1") + (version "1.6.0") (source (origin (method url-fetch) (uri (pypi-uri "pylast" version)) (sha256 (base32 - "10znd9xr1vs2ix519jkz3ccm90zciaddcdr2w2wrrh2jyy3bc59a")))) + "0bml11gfkxqd3i2jxkn5k2xllc4rvxjcyhs8an05gcyy1zp2bwvb")))) (build-system python-build-system) (native-inputs `(("python-coverage" ,python-coverage) @@ -1898,30 +1927,28 @@ detailed track info including timbre, pitch, rhythm and loudness information. (synopsis "Python interface to Last.fm and Libre.fm") (description "A Python interface to Last.fm and other API-compatible websites such as Libre.fm.") - (license license:asl2.0) - (properties `((python2-variant . ,(delay python2-pylast)))))) + (license license:asl2.0))) (define-public python2-pylast - (let ((pylast (package-with-python2 - (strip-python2-variant python-pylast)))) - (package (inherit pylast) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs pylast)))))) + (package-with-python2 python-pylast)) (define-public beets (package (name "beets") - (version "1.3.19") + (version "1.4.1") (source (origin (method url-fetch) (uri (pypi-uri "beets" version)) (sha256 (base32 - "1vi1dh3fr554bnm8y9pjy09hblw18v6cl2jppzwlp72afri1w93b")))) + "14yn88xrcinpdg3ic285ar0wmwldzyjfd3ll6clmp3z3r4iqffip")))) (build-system python-build-system) (arguments - `(#:python ,python-2 ; only Python 2 is supported + `(;; Python 3 support is still "alpha", and the upstream maintainers ask + ;; packagers not to use it yet: + ;; https://github.com/beetbox/beets/releases/tag/v1.4.1 + ;; TODO Check this again for the next release. + #:python ,python-2 #:phases (modify-phases %standard-phases (add-after 'unpack 'set-HOME @@ -1931,7 +1958,6 @@ websites such as Libre.fm.") (native-inputs `(("python2-beautifulsoup4" ,python2-beautifulsoup4) ("python2-flask" ,python2-flask) - ("python2-setuptools" ,python2-setuptools) ("python2-mock" ,python2-mock) ("python2-mpd2" ,python2-mpd2) ("python2-nose" ,python2-nose) @@ -1943,7 +1969,8 @@ websites such as Libre.fm.") ("python2-responses" ,python2-responses))) ;; TODO: Install optional plugins and dependencies. (inputs - `(("python2-enum34" ,python2-enum34) + `(("python2-discogs-client" ,python2-discogs-client) + ("python2-enum34" ,python2-enum34) ("python2-jellyfish" ,python2-jellyfish) ("python2-munkres" ,python2-munkres) ("python2-musicbrainzngs" ,python2-musicbrainzngs) @@ -2421,3 +2448,31 @@ a simulation of an analog Wah pedal with switchless activation.")))) filters, crossovers, simple gain plugins without zipper noise, switch box plugins, a switch trigger, a toggle switch, and a peakmeter.") (license license:gpl2+)))) + +(define-public python-discogs-client + (package + (name "python-discogs-client") + (version "2.2.1") + (source (origin + (method url-fetch) + (uri (pypi-uri "discogs-client" version)) + (sha256 + (base32 + "053ld2psh0yj3z0kg6z5bn4y3cr562m727494n0ayhgzbkjbacly")))) + (build-system python-build-system) + (propagated-inputs + `(("python-oauthlib" ,python-oauthlib) + ("python-requests" ,python-requests))) + (native-inputs + `(("python-six" ,python-six))) + (home-page "https://github.com/discogs/discogs_client") + (synopsis "Official Python client for the Discogs API") + (description "This is the official Discogs API client for Python. It enables +you to query the Discogs database for information on artists, releases, labels, +users, Marketplace listings, and more. It also supports OAuth 1.0a +authorization, which allows you to change user data such as profile information, +collections and wantlists, inventory, and orders.") + (license license:bsd-2))) + +(define-public python2-discogs-client + (package-with-python2 python-discogs-client)) diff --git a/gnu/packages/ntp.scm b/gnu/packages/ntp.scm index 177eb8946a..13781fbdad 100644 --- a/gnu/packages/ntp.scm +++ b/gnu/packages/ntp.scm @@ -39,33 +39,34 @@ (define-public ntp (package (name "ntp") - (version "4.2.8p8") - (source (origin - (method url-fetch) - (uri (list (string-append - "http://archive.ntp.org/ntp4/ntp-" - (version-major+minor version) - "/ntp-" version ".tar.gz") - (string-append - "https://www.eecis.udel.edu/~ntp/ntp_spool/ntp4/ntp-" - (version-major+minor version) - "/ntp-" version ".tar.gz"))) - (sha256 - (base32 - "1vlpgd0dk2wkpmmf869sfxi8f46sfnmjgk51vl8n6vj5y2sx1cra")) - (modules '((guix build utils))) - (snippet - '(begin - ;; Remove the bundled copy of libevent, but we must keep - ;; sntp/libevent/build-aux since configure.ac contains - ;; AC_CONFIG_AUX_DIR([sntp/libevent/build-aux]) - (rename-file "sntp/libevent/build-aux" - "sntp/libevent:build-aux") - (delete-file-recursively "sntp/libevent") - (mkdir "sntp/libevent") - (rename-file "sntp/libevent:build-aux" - "sntp/libevent/build-aux") - #t)))) + (version "4.2.8p9") + (source + (origin + (method url-fetch) + (uri (list (string-append + "http://archive.ntp.org/ntp4/ntp-" + (version-major+minor version) + "/ntp-" version ".tar.gz") + (string-append + "https://www.eecis.udel.edu/~ntp/ntp_spool/ntp4/ntp-" + (version-major+minor version) + "/ntp-" version ".tar.gz"))) + (sha256 + (base32 + "0whbyf82lrczbri4adbsa4hg1ppfa6c7qcj7nhjwdfp1g1vjh95p")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Remove the bundled copy of libevent, but we must keep + ;; sntp/libevent/build-aux since configure.ac contains + ;; AC_CONFIG_AUX_DIR([sntp/libevent/build-aux]) + (rename-file "sntp/libevent/build-aux" + "sntp/libevent:build-aux") + (delete-file-recursively "sntp/libevent") + (mkdir "sntp/libevent") + (rename-file "sntp/libevent:build-aux" + "sntp/libevent/build-aux") + #t)))) (native-inputs `(("which" ,which) ("pkg-config" ,pkg-config))) (inputs diff --git a/gnu/packages/nutrition.scm b/gnu/packages/nutrition.scm index 636379806c..9e0430b20a 100644 --- a/gnu/packages/nutrition.scm +++ b/gnu/packages/nutrition.scm @@ -52,11 +52,7 @@ `(("pygtk" ,python2-pygtk) ("sqlalchemy" ,python2-sqlalchemy) ("python-pillow" ,python2-pillow) - ("elib.intl" ,python2-elib.intl) - ;; XXX: This really isn't an input for gourmet but of pillow. Making - ;; it a propagated input in pillow doesn't seem to get its site path - ;; into gourmet's wrapper's PYTHONPATH however... - ("python-setuptools" ,python2-setuptools))) + ("elib.intl" ,python2-elib.intl))) (arguments `(#:python ,python-2 ;exception and print syntax #:tests? #f)) ;tests look bitrotted diff --git a/gnu/packages/openstack.scm b/gnu/packages/openstack.scm index 43a6490b22..e2672668d8 100644 --- a/gnu/packages/openstack.scm +++ b/gnu/packages/openstack.scm @@ -49,9 +49,8 @@ ("python-pyyaml" ,python-pyyaml) ("python-six" ,python-six) ("python-stevedore" ,python-stevedore))) - (inputs + (native-inputs `(("python-pbr" ,python-pbr) - ("python-setuptools" ,python-setuptools) ;; Tests ("python-fixtures" ,python-fixtures) ("python-mock" ,python-mock) @@ -85,10 +84,9 @@ all the files it generates a report.") (propagated-inputs `(("python-six" ,python-six) ("python-wrapt" ,python-wrapt))) - (inputs + (native-inputs `(("python-babel" ,python-babel) ("python-pbr" ,python-pbr) - ("python-setuptools" ,python-setuptools) ;; Tests. ("python-oslotest" ,python-oslotest))) (home-page "http://www.openstack.org/") @@ -122,9 +120,8 @@ manner.") ("python-pep8-1.5.7" ,python-pep8-1.5.7) ("python-pyflakes-0.8.1" ,python-pyflakes-0.8.1) ("python-six" ,python-six))) - (inputs - `(("python-setuptools" ,python-setuptools) - ;; Tests + (native-inputs + `(;; Tests ("python-testscenarios" ,python-testscenarios))) (home-page "http://github.com/openstack-dev/hacking") (synopsis "OpenStack hacking guideline enforcement") @@ -152,8 +149,6 @@ guidelines}.") (native-inputs `(("python-fixtures" ,python-fixtures) ("python-pbr" ,python-pbr) - ("python-setuptools" ,python-setuptools) - ("python-six" ,python-six) ("python-testtools" ,python-testtools))) (home-page "http://www.openstack.org/") (synopsis "Mock object framework for Python") @@ -181,14 +176,14 @@ tested on Python version 3.2, 2.7 and 2.6.") (build-system python-build-system) (arguments `(#:tests? #f)) ;; Circular dependency with python-oslotest - (inputs + (propagated-inputs `(("python-appdirs" ,python-appdirs) + ("python-pyyaml" ,python-pyyaml))) + (native-inputs + `(("python-pbr" ,python-pbr) ("python-fixtures" ,python-fixtures) ("python-mimeparse" ,python-mimeparse) - ("python-pbr" ,python-pbr) - ("python-pyyaml" ,python-pyyaml) ("python-testrepository" ,python-testrepository) - ("python-setuptools" ,python-setuptools) ("python-testscenarios" ,python-testscenarios) ("python-testtools" ,python-testtools))) (home-page "http://www.openstack.org/") @@ -221,12 +216,11 @@ tested on Python version 3.2, 2.7 and 2.6.") ;; when building the package. Skip the tests for now. `(#:tests? #f)) (propagated-inputs + `(("python-subunit" ,python-subunit))) + (native-inputs `(("python-pbr" ,python-pbr) - ("python-subunit" ,python-subunit) - ("python-testtools" ,python-testtools))) - (inputs - `(("python-babel" ,python-babel) - ("python-setuptools" ,python-setuptools))) + ("python-testtools" ,python-testtools) + ("python-babel" ,python-babel))) (home-page "https://www.openstack.org/") (synopsis "Testr wrapper to provide functionality for OpenStack projects") (description @@ -252,10 +246,9 @@ tested on Python version 3.2, 2.7 and 2.6.") (propagated-inputs `(("python-requests" ,python-requests) ("python-six" ,python-six))) - (inputs - `(("python-pbr" ,python-pbr))) (native-inputs - `(("python-discover" ,python-discover) + `(("python-pbr" ,python-pbr) + ("python-discover" ,python-discover) ("python-docutils" ,python-docutils) ("python-fixtures" ,python-fixtures) ("python-mock" ,python-mock) @@ -267,16 +260,10 @@ tested on Python version 3.2, 2.7 and 2.6.") (description "This module provides a building block to stub out the HTTP requests portions of your testing code.") - (license asl2.0) - (properties `((python2-variant . ,(delay python2-requests-mock)))))) + (license asl2.0))) (define-public python2-requests-mock - (let ((base (package-with-python2 - (strip-python2-variant python-requests-mock)))) - (package (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-requests-mock)) (define-public python-stevedore (package @@ -292,10 +279,8 @@ portions of your testing code.") (build-system python-build-system) (propagated-inputs `(("python-six" ,python-six))) - (inputs - `(("python-pbr" ,python-pbr))) (native-inputs - `(("python-setuptools" ,python-setuptools) + `(("python-pbr" ,python-pbr) ;; Tests ("python-docutils" ,python-docutils) ("python-mock" ,python-mock) @@ -346,12 +331,11 @@ extensions.") ("python-paramiko" ,python-paramiko) ("python-pbr" ,python-pbr) ("python-six" ,python-six))) - (inputs + (native-inputs `(("python-babel" ,python-babel) ("python-mock" ,python-mock) ("python-os-testr" ,python-os-testr) - ("python-oslotest" ,python-oslotest) - ("python-setuptools" ,python-setuptools))) + ("python-oslotest" ,python-oslotest))) (home-page "https://www.openstack.org/") (synopsis "OpenStack functional testing library") (description @@ -382,9 +366,8 @@ common features used in Tempest.") `(("python-netaddr" ,python-netaddr) ("python-six" ,python-six) ("python-stevedore" ,python-stevedore))) - (inputs + (native-inputs `(("python-pbr" ,python-pbr) - ("python-setuptools" ,python-setuptools) ;; Tests ("python-oslo.i18n" ,python-oslo.i18n) ("python-mock" ,python-mock) @@ -412,10 +395,9 @@ common features used in Tempest.") (base32 "0kvha0rs9295njyl2z6n6zm5dapi5mrl5zwjm0m6ldqrvccyf8c3")))) (build-system python-build-system) - (inputs + (native-inputs `(("python-babel" ,python-babel) ("python-pbr" ,python-pbr) - ("python-setuptools" ,python-setuptools) ;; Tests. ("python-oslotest" ,python-oslotest))) (home-page "http://launchpad.net/oslo") @@ -444,9 +426,8 @@ pipeline and used by various modules such as logging.") (propagated-inputs `(("python-babel" ,python-babel) ("python-six" ,python-six))) - (inputs + (native-inputs `(("python-pbr" ,python-pbr) - ("python-setuptools" ,python-setuptools) ;; Tests ("python-mock" ,python-mock) ("python-mox3" ,python-mox3) @@ -486,13 +467,12 @@ in an application or library.") ("python-oslo.utils" ,python-oslo.utils) ("python-oslo.serialization" ,python-oslo.serialization) ("python-six" ,python-six))) - (inputs + (native-inputs `(("python-babel" ,python-babel) ("python-iso8601" ,python-iso8601) ("python-mock" ,python-mock) ("python-oslotest" ,python-oslotest) - ("python-pbr" ,python-pbr) - ("python-setuptools" ,python-setuptools))) + ("python-pbr" ,python-pbr))) (home-page "http://launchpad.net/oslo") (synopsis "Python logging library of the Oslo project") (description @@ -523,10 +503,9 @@ handlers and support for context specific logging (like resource id’s etc).") ("python-simplejson" ,python-simplejson) ("python-six" ,python-six) ("python-pytz" ,python-pytz))) - (inputs + (native-inputs `(("python-babel" ,python-babel) ("python-pbr" ,python-pbr) - ("python-setuptools" ,python-setuptools) ;; Tests. ("python-mock" ,python-mock) ("python-oslo.i18n" ,python-oslo.i18n) @@ -555,11 +534,10 @@ in transmittable and storable formats, such as JSON and MessagePack.") (build-system python-build-system) (propagated-inputs `(("python-requests" ,python-requests))) - (inputs + (native-inputs `(("python-pbr" ,python-pbr) ("python-docutils" ,python-docutils) ("python-hacking" ,python-hacking) - ("python-setuptools" ,python-setuptools) ("python-sphinx" ,python-sphinx))) (home-page "http://www.openstack.org/") (synopsis "OpenStack sphinx extensions and theme") @@ -591,10 +569,9 @@ from the OpenStack project.") ("python-mock" ,python-mock) ("python-mox3" ,python-mox3) ("python-six" ,python-six))) - (inputs + (native-inputs `(("python-pbr" ,python-pbr) ("python-os-client-config" ,python-os-client-config) - ("python-setuptools" ,python-setuptools) ("python-subunit" ,python-subunit) ("python-testrepository" ,python-testrepository) ("python-testscenarios" ,python-testscenarios) @@ -635,10 +612,9 @@ and better support for mocking results.") ("python-netifaces" ,python-netifaces) ("python-pytz" ,python-pytz) ("python-six" ,python-six))) - (inputs + (native-inputs `(("python-babel" ,python-babel) ("python-pbr" ,python-pbr) - ("python-setuptools" ,python-setuptools) ;; Tests. ("python-oslotest" ,python-oslotest) ("python-mock" ,python-mock) @@ -668,8 +644,7 @@ handling.") "1w4csvkah67rfpxylxnvs2s3594i0f9isy8pf4gnsqs5zirvjaa4")))) (build-system python-build-system) (native-inputs - `(("python-setuptools" ,python-setuptools) - ("python-sphinx" ,python-sphinx) + `(("python-sphinx" ,python-sphinx) ;; and some packages for the tests ("openssl" ,openssl) ("python-coverage" ,python-coverage) @@ -744,7 +719,6 @@ LDAP.") (build-system python-build-system) (native-inputs `(("python-pbr" ,python-pbr) - ("python-setuptools" ,python-setuptools) ("python-sphinx" ,python-sphinx) ;; The folloing packages are needed for the tests. ("python-coverage" ,python-coverage) @@ -814,9 +788,10 @@ permanence.") (list git openssh)))))))))) (native-inputs `(("python-pbr" ,python-pbr))) + (propagated-inputs + `(("python-requests" ,python-requests))) (inputs - `(("python-requests" ,python-requests) - ("git" ,git) + `(("git" ,git) ("openssh" ,openssh))) (home-page "http://docs.openstack.org/infra/git-review/") (synopsis "Command-line tool for Gerrit") @@ -826,8 +801,4 @@ Gerrit for review, or fetching existing ones.") (license asl2.0))) (define-public python2-git-review - (let ((base (package-with-python2 (strip-python2-variant python-git-review)))) - (package (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-git-review)) diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm index 051dff34b7..4907a5016e 100644 --- a/gnu/packages/package-management.scm +++ b/gnu/packages/package-management.scm @@ -51,6 +51,7 @@ #:use-module (gnu packages gnuzilla) #:use-module (gnu packages cpio) #:use-module (gnu packages tls) + #:use-module (gnu packages ssh) #:use-module (srfi srfi-1) #:use-module (srfi srfi-26) #:use-module (ice-9 popen) @@ -143,9 +144,11 @@ ;; Guile-JSON automatically. (let* ((out (assoc-ref outputs "out")) (json (assoc-ref inputs "guile-json")) + (ssh (assoc-ref inputs "guile-ssh")) (gnutls (assoc-ref inputs "gnutls")) (path (string-append json "/share/guile/site/2.0:" + ssh "/share/guile/site/2.0:" gnutls "/share/guile/site/2.0"))) ;; Ignore user settings so that a bogus @@ -203,6 +206,7 @@ (propagated-inputs `(("gnutls" ,gnutls) ;for 'guix download' & co. ("guile-json" ,guile-json) + ("guile-ssh" ,guile-ssh) ("geiser" ,geiser) ;for guix.el ("emacs-magit-popup" ,emacs-magit-popup))) ;for "M-x guix" command diff --git a/gnu/packages/password-utils.scm b/gnu/packages/password-utils.scm index 55c14762e9..cf030ecc82 100644 --- a/gnu/packages/password-utils.scm +++ b/gnu/packages/password-utils.scm @@ -250,8 +250,7 @@ random passwords that pass the checks.") (native-inputs `(("help2man" ,help2man))) (inputs - `(("python-setuptools" ,python2-setuptools) - ("python2-xdo" ,python2-xdo) + `(("python2-xdo" ,python2-xdo) ("python2-pygpgme" ,python2-pygpgme) ("python2-pygtk" ,python2-pygtk))) (propagated-inputs @@ -362,7 +361,7 @@ winner of the 2015 Password Hashing Competition.") (native-inputs `(("python-pycparser" ,python-pycparser) ("python-pytest" ,python-pytest))) - (inputs + (propagated-inputs `(("python-cffi" ,python-cffi) ("python-six" ,python-six))) (home-page "https://github.com/pyca/bcrypt/") @@ -376,8 +375,4 @@ Password Scheme\"} by Niels Provos and David Mazieres.") (license license:asl2.0))) (define-public python2-bcrypt - (let ((bcrypt (package-with-python2 python-bcrypt))) - (package (inherit bcrypt) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs bcrypt)))))) + (package-with-python2 python-bcrypt)) diff --git a/gnu/packages/patches/cairo-CVE-2016-9082.patch b/gnu/packages/patches/cairo-CVE-2016-9082.patch new file mode 100644 index 0000000000..ad83404194 --- /dev/null +++ b/gnu/packages/patches/cairo-CVE-2016-9082.patch @@ -0,0 +1,122 @@ +From: Adrian Johnson <ajohnson@redneon.com> +Date: Thu, 20 Oct 2016 21:12:30 +1030 +Subject: [PATCH] image: prevent invalid ptr access for > 4GB images + +Image data is often accessed using: + + image->data + y * image->stride + +On 64-bit achitectures if the image data is > 4GB, this computation +will overflow since both y and stride are 32-bit types. + +bug report: https://bugs.freedesktop.org/show_bug.cgi?id=98165 +patch: https://bugs.freedesktop.org/attachment.cgi?id=127421 +--- + boilerplate/cairo-boilerplate.c | 4 +++- + src/cairo-image-compositor.c | 4 ++-- + src/cairo-image-surface-private.h | 2 +- + src/cairo-mesh-pattern-rasterizer.c | 2 +- + src/cairo-png.c | 2 +- + src/cairo-script-surface.c | 3 ++- + 6 files changed, 10 insertions(+), 7 deletions(-) + +diff --git a/boilerplate/cairo-boilerplate.c b/boilerplate/cairo-boilerplate.c +index 7fdbf79..4804dea 100644 +--- a/boilerplate/cairo-boilerplate.c ++++ b/boilerplate/cairo-boilerplate.c +@@ -42,6 +42,7 @@ + #undef CAIRO_VERSION_H + #include "../cairo-version.h" + ++#include <stddef.h> + #include <stdlib.h> + #include <ctype.h> + #include <assert.h> +@@ -976,7 +977,8 @@ cairo_surface_t * + cairo_boilerplate_image_surface_create_from_ppm_stream (FILE *file) + { + char format; +- int width, height, stride; ++ int width, height; ++ ptrdiff_t stride; + int x, y; + unsigned char *data; + cairo_surface_t *image = NULL; +diff --git a/src/cairo-image-compositor.c b/src/cairo-image-compositor.c +index 48072f8..3ca0006 100644 +--- a/src/cairo-image-compositor.c ++++ b/src/cairo-image-compositor.c +@@ -1575,7 +1575,7 @@ typedef struct _cairo_image_span_renderer { + pixman_image_t *src, *mask; + union { + struct fill { +- int stride; ++ ptrdiff_t stride; + uint8_t *data; + uint32_t pixel; + } fill; +@@ -1594,7 +1594,7 @@ typedef struct _cairo_image_span_renderer { + struct finish { + cairo_rectangle_int_t extents; + int src_x, src_y; +- int stride; ++ ptrdiff_t stride; + uint8_t *data; + } mask; + } u; +diff --git a/src/cairo-image-surface-private.h b/src/cairo-image-surface-private.h +index 8ca694c..7e78d61 100644 +--- a/src/cairo-image-surface-private.h ++++ b/src/cairo-image-surface-private.h +@@ -71,7 +71,7 @@ struct _cairo_image_surface { + + int width; + int height; +- int stride; ++ ptrdiff_t stride; + int depth; + + unsigned owns_data : 1; +diff --git a/src/cairo-mesh-pattern-rasterizer.c b/src/cairo-mesh-pattern-rasterizer.c +index 1b63ca8..e7f0db6 100644 +--- a/src/cairo-mesh-pattern-rasterizer.c ++++ b/src/cairo-mesh-pattern-rasterizer.c +@@ -470,7 +470,7 @@ draw_pixel (unsigned char *data, int width, int height, int stride, + tg += tg >> 16; + tb += tb >> 16; + +- *((uint32_t*) (data + y*stride + 4*x)) = ((ta << 16) & 0xff000000) | ++ *((uint32_t*) (data + y*(ptrdiff_t)stride + 4*x)) = ((ta << 16) & 0xff000000) | + ((tr >> 8) & 0xff0000) | ((tg >> 16) & 0xff00) | (tb >> 24); + } + } +diff --git a/src/cairo-png.c b/src/cairo-png.c +index 562b743..aa8c227 100644 +--- a/src/cairo-png.c ++++ b/src/cairo-png.c +@@ -673,7 +673,7 @@ read_png (struct png_read_closure_t *png_closure) + } + + for (i = 0; i < png_height; i++) +- row_pointers[i] = &data[i * stride]; ++ row_pointers[i] = &data[i * (ptrdiff_t)stride]; + + png_read_image (png, row_pointers); + png_read_end (png, info); +diff --git a/src/cairo-script-surface.c b/src/cairo-script-surface.c +index ea0117d..91e4baa 100644 +--- a/src/cairo-script-surface.c ++++ b/src/cairo-script-surface.c +@@ -1202,7 +1202,8 @@ static cairo_status_t + _write_image_surface (cairo_output_stream_t *output, + const cairo_image_surface_t *image) + { +- int stride, row, width; ++ int row, width; ++ ptrdiff_t stride; + uint8_t row_stack[CAIRO_STACK_BUFFER_SIZE]; + uint8_t *rowdata; + uint8_t *data; +-- +2.1.4 + diff --git a/gnu/packages/patches/cyrus-sasl-CVE-2013-4122.patch b/gnu/packages/patches/cyrus-sasl-CVE-2013-4122.patch new file mode 100644 index 0000000000..fc72e42e03 --- /dev/null +++ b/gnu/packages/patches/cyrus-sasl-CVE-2013-4122.patch @@ -0,0 +1,130 @@ +Fix CVE-2013-4122. + +https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2013-4122 + +Patch copied from upstream source repository: +https://github.com/cyrusimap/cyrus-sasl/commit/dedad73e5e7a75d01a5f3d5a6702ab8ccd2ff40d + +From dedad73e5e7a75d01a5f3d5a6702ab8ccd2ff40d Mon Sep 17 00:00:00 2001 +From: mancha <mancha1@hush.com> +Date: Thu, 11 Jul 2013 10:08:07 +0100 +Subject: Handle NULL returns from glibc 2.17+ crypt() + +Starting with glibc 2.17 (eglibc 2.17), crypt() fails with EINVAL +(w/ NULL return) if the salt violates specifications. Additionally, +on FIPS-140 enabled Linux systems, DES/MD5-encrypted passwords +passed to crypt() fail with EPERM (w/ NULL return). + +When using glibc's crypt(), check return value to avoid a possible +NULL pointer dereference. + +Patch by mancha1@hush.com. +--- + pwcheck/pwcheck_getpwnam.c | 3 ++- + pwcheck/pwcheck_getspnam.c | 4 +++- + saslauthd/auth_getpwent.c | 4 +++- + saslauthd/auth_shadow.c | 8 +++----- + 4 files changed, 11 insertions(+), 8 deletions(-) + +diff --git a/pwcheck/pwcheck_getpwnam.c b/pwcheck/pwcheck_getpwnam.c +index 4b34222..400289c 100644 +--- a/pwcheck/pwcheck_getpwnam.c ++++ b/pwcheck/pwcheck_getpwnam.c +@@ -32,6 +32,7 @@ char *userid; + char *password; + { + char* r; ++ char* crpt_passwd; + struct passwd *pwd; + + pwd = getpwnam(userid); +@@ -41,7 +42,7 @@ char *password; + else if (pwd->pw_passwd[0] == '*') { + r = "Account disabled"; + } +- else if (strcmp(pwd->pw_passwd, crypt(password, pwd->pw_passwd)) != 0) { ++ else if (!(crpt_passwd = crypt(password, pwd->pw_passwd)) || strcmp(pwd->pw_passwd, (const char *)crpt_passwd) != 0) { + r = "Incorrect password"; + } + else { +diff --git a/pwcheck/pwcheck_getspnam.c b/pwcheck/pwcheck_getspnam.c +index 2b11286..6d607bb 100644 +--- a/pwcheck/pwcheck_getspnam.c ++++ b/pwcheck/pwcheck_getspnam.c +@@ -32,13 +32,15 @@ char *userid; + char *password; + { + struct spwd *pwd; ++ char *crpt_passwd; + + pwd = getspnam(userid); + if (!pwd) { + return "Userid not found"; + } + +- if (strcmp(pwd->sp_pwdp, crypt(password, pwd->sp_pwdp)) != 0) { ++ crpt_passwd = crypt(password, pwd->sp_pwdp); ++ if (!crpt_passwd || strcmp(pwd->sp_pwdp, (const char *)crpt_passwd) != 0) { + return "Incorrect password"; + } + else { +diff --git a/saslauthd/auth_getpwent.c b/saslauthd/auth_getpwent.c +index fc8029d..d4ebe54 100644 +--- a/saslauthd/auth_getpwent.c ++++ b/saslauthd/auth_getpwent.c +@@ -77,6 +77,7 @@ auth_getpwent ( + { + /* VARIABLES */ + struct passwd *pw; /* pointer to passwd file entry */ ++ char *crpt_passwd; /* encrypted password */ + int errnum; + /* END VARIABLES */ + +@@ -105,7 +106,8 @@ auth_getpwent ( + } + } + +- if (strcmp(pw->pw_passwd, (const char *)crypt(password, pw->pw_passwd))) { ++ crpt_passwd = crypt(password, pw->pw_passwd); ++ if (!crpt_passwd || strcmp(pw->pw_passwd, (const char *)crpt_passwd)) { + if (flags & VERBOSE) { + syslog(LOG_DEBUG, "DEBUG: auth_getpwent: %s: invalid password", login); + } +diff --git a/saslauthd/auth_shadow.c b/saslauthd/auth_shadow.c +index 677131b..1988afd 100644 +--- a/saslauthd/auth_shadow.c ++++ b/saslauthd/auth_shadow.c +@@ -210,8 +210,8 @@ auth_shadow ( + RETURN("NO Insufficient permission to access NIS authentication database (saslauthd)"); + } + +- cpw = strdup((const char *)crypt(password, sp->sp_pwdp)); +- if (strcmp(sp->sp_pwdp, cpw)) { ++ cpw = crypt(password, sp->sp_pwdp); ++ if (!cpw || strcmp(sp->sp_pwdp, (const char *)cpw)) { + if (flags & VERBOSE) { + /* + * This _should_ reveal the SHADOW_PW_LOCKED prefix to an +@@ -221,10 +221,8 @@ auth_shadow ( + syslog(LOG_DEBUG, "DEBUG: auth_shadow: pw mismatch: '%s' != '%s'", + sp->sp_pwdp, cpw); + } +- free(cpw); + RETURN("NO Incorrect password"); + } +- free(cpw); + + /* + * The following fields will be set to -1 if: +@@ -286,7 +284,7 @@ auth_shadow ( + RETURN("NO Invalid username"); + } + +- if (strcmp(upw->upw_passwd, crypt(password, upw->upw_passwd)) != 0) { ++ if (!(cpw = crypt(password, upw->upw_passwd)) || (strcmp(upw->upw_passwd, (const char *)cpw) != 0)) { + if (flags & VERBOSE) { + syslog(LOG_DEBUG, "auth_shadow: pw mismatch: %s != %s", + password, upw->upw_passwd); +-- +cgit v0.12 + diff --git a/gnu/packages/patches/gcj-arm-mode.patch b/gnu/packages/patches/gcj-arm-mode.patch new file mode 100644 index 0000000000..a3f999f7e9 --- /dev/null +++ b/gnu/packages/patches/gcj-arm-mode.patch @@ -0,0 +1,36 @@ +Taken from +https://sources.debian.net/data/main/g/gcc-4.9/4.9.2-10/debian/patches/gcj-arm-mode.diff + +# DP: For armhf, force arm mode instead of thumb mode + +--- a/libjava/configure.host ++++ b/libjava/configure.host +@@ -66,6 +66,9 @@ + ;; + esac + ++# on armhf force arm mode ++libgcj_flags="${libgcj_flags} -marm" ++ + AM_RUNTESTFLAGS= + + # Set any host dependent compiler flags. +--- a/gcc/java/lang-specs.h ++++ b/gcc/java/lang-specs.h +@@ -47,7 +47,7 @@ + %{.class|.zip|.jar|!fsyntax-only:jc1 \ + %{.java|fsaw-java-file:%U.jar -fsource-filename=%i %<ffilelist-file} \ + %{.class|.zip|.jar|ffilelist-file|fcompile-resource*:%i} \ +- %(jc1) %(cc1_options) %{I*} %{!findirect-dispatch:-faux-classpath %U.zip} \ ++ %(jc1) %(cc1_options) -marm %{I*} %{!findirect-dispatch:-faux-classpath %U.zip} \ + %{MD:-MD_} %{MMD:-MMD_} %{M} %{MM} %{MA} %{MT*} %{MF*}\ + %(invoke_as)}", + 0, 0, 0}, +--- a/libjava/libgcj.spec.in ++++ b/libjava/libgcj.spec.in +@@ -9,4 +9,4 @@ + %rename lib liborig + *lib: @LD_START_STATIC_SPEC@ @LIBGCJ_SPEC@ @LD_FINISH_STATIC_SPEC@ @LIBMATHSPEC@ @LDLIBICONV@ @GCSPEC@ @THREADSPEC@ @ZLIBSPEC@ @SYSTEMSPEC@ %(libgcc) @LIBSTDCXXSPEC@ %(liborig) + +-*jc1: @HASH_SYNC_SPEC@ @DIVIDESPEC@ @CHECKREFSPEC@ @JC1GCSPEC@ @EXCEPTIONSPEC@ @BACKTRACESPEC@ @IEEESPEC@ @ATOMICSPEC@ @LIBGCJ_BC_SPEC@ -fkeep-inline-functions ++*jc1: @HASH_SYNC_SPEC@ @DIVIDESPEC@ @CHECKREFSPEC@ @JC1GCSPEC@ @EXCEPTIONSPEC@ @BACKTRACESPEC@ @IEEESPEC@ @ATOMICSPEC@ @LIBGCJ_BC_SPEC@ -fkeep-inline-functions -marm diff --git a/gnu/packages/patches/gst-plugins-good-fix-crashes.patch b/gnu/packages/patches/gst-plugins-good-fix-crashes.patch new file mode 100644 index 0000000000..c36a595608 --- /dev/null +++ b/gnu/packages/patches/gst-plugins-good-fix-crashes.patch @@ -0,0 +1,1047 @@ +Fixes upstream bug #774859 (flic decoder: Invalid memory read in +flx_decode_chunks): + +https://bugzilla.gnome.org/show_bug.cgi?id=774859 + +Patch copied from upstream source repository: + +https://cgit.freedesktop.org/gstreamer/gst-plugins-good/commit/?id=be670f0daf67304fb92c76aa09c30cae0bfd1fe4 + +From be670f0daf67304fb92c76aa09c30cae0bfd1fe4 Mon Sep 17 00:00:00 2001 +From: Matthew Waters <matthew@centricular.com> +Date: Wed, 23 Nov 2016 07:09:06 +1100 +Subject: [PATCH] flxdec: rewrite logic based on GstByteReader/Writer + +Solves overreading/writing the given arrays and will error out if the +streams asks to do that. + +Also does more error checking that the stream is valid and won't +overrun any allocated arrays. Also mitigate integer overflow errors +calculating allocation sizes. + +https://bugzilla.gnome.org/show_bug.cgi?id=774859 +--- + gst/flx/flx_color.c | 1 - + gst/flx/flx_fmt.h | 72 ------- + gst/flx/gstflxdec.c | 610 ++++++++++++++++++++++++++++++++++++---------------- + gst/flx/gstflxdec.h | 4 +- + 4 files changed, 427 insertions(+), 260 deletions(-) + +diff --git a/gst/flx/flx_color.c b/gst/flx/flx_color.c +index 047bfdf..3a58135 100644 +--- a/gst/flx/flx_color.c ++++ b/gst/flx/flx_color.c +@@ -101,7 +101,6 @@ flx_set_palette_vector (FlxColorSpaceConverter * flxpal, guint start, guint num, + } else { + memcpy (&flxpal->palvec[start * 3], newpal, grab * 3); + } +- + } + + void +diff --git a/gst/flx/flx_fmt.h b/gst/flx/flx_fmt.h +index 9ab31ba..abff200 100644 +--- a/gst/flx/flx_fmt.h ++++ b/gst/flx/flx_fmt.h +@@ -123,78 +123,6 @@ typedef struct _FlxFrameType + } FlxFrameType; + #define FlxFrameTypeSize 10 + +-#if G_BYTE_ORDER == G_BIG_ENDIAN +-#define LE_TO_BE_16(i16) ((guint16) (((i16) << 8) | ((i16) >> 8))) +-#define LE_TO_BE_32(i32) \ +- (((guint32) (LE_TO_BE_16((guint16) (i32))) << 16) | (LE_TO_BE_16((i32) >> 16))) +- +-#define FLX_FRAME_TYPE_FIX_ENDIANNESS(frm_type_p) \ +- do { \ +- (frm_type_p)->chunks = LE_TO_BE_16((frm_type_p)->chunks); \ +- (frm_type_p)->delay = LE_TO_BE_16((frm_type_p)->delay); \ +- } while(0) +- +-#define FLX_HUFFMAN_TABLE_FIX_ENDIANNESS(hffmn_table_p) \ +- do { \ +- (hffmn_table_p)->codelength = \ +- LE_TO_BE_16((hffmn_table_p)->codelength); \ +- (hffmn_table_p)->numcodes = LE_TO_BE_16((hffmn_table_p)->numcodes); \ +- } while(0) +- +-#define FLX_SEGMENT_TABLE_FIX_ENDIANNESS(sgmnt_table_p) \ +- ((sgmnt_table_p)->segments = LE_TO_BE_16((sgmnt_table_p)->segments)) +- +-#define FLX_PREFIX_CHUNK_FIX_ENDIANNESS(prfx_chnk_p) \ +- do { \ +- (prfx_chnk_p)->chunks = LE_TO_BE_16((prfx_chnk_p)->chunks); \ +- } while(0) +- +-#define FLX_FRAME_CHUNK_FIX_ENDIANNESS(frm_chnk_p) \ +- do { \ +- (frm_chnk_p)->size = LE_TO_BE_32((frm_chnk_p)->size); \ +- (frm_chnk_p)->id = LE_TO_BE_16((frm_chnk_p)->id); \ +- } while(0) +- +-#define FLX_HDR_FIX_ENDIANNESS(hdr_p) \ +- do { \ +- (hdr_p)->size = LE_TO_BE_32((hdr_p)->size); \ +- (hdr_p)->type = LE_TO_BE_16((hdr_p)->type); \ +- (hdr_p)->frames = LE_TO_BE_16((hdr_p)->frames); \ +- (hdr_p)->width = LE_TO_BE_16((hdr_p)->width); \ +- (hdr_p)->height = LE_TO_BE_16((hdr_p)->height); \ +- (hdr_p)->depth = LE_TO_BE_16((hdr_p)->depth); \ +- (hdr_p)->flags = LE_TO_BE_16((hdr_p)->flags); \ +- (hdr_p)->speed = LE_TO_BE_32((hdr_p)->speed); \ +- (hdr_p)->reserved1 = LE_TO_BE_16((hdr_p)->reserved1); \ +- (hdr_p)->created = LE_TO_BE_32((hdr_p)->created); \ +- (hdr_p)->creator = LE_TO_BE_32((hdr_p)->creator); \ +- (hdr_p)->updated = LE_TO_BE_32((hdr_p)->updated); \ +- (hdr_p)->updater = LE_TO_BE_32((hdr_p)->updater); \ +- (hdr_p)->aspect_dx = LE_TO_BE_16((hdr_p)->aspect_dx); \ +- (hdr_p)->aspect_dy = LE_TO_BE_16((hdr_p)->aspect_dy); \ +- (hdr_p)->ext_flags = LE_TO_BE_16((hdr_p)->ext_flags); \ +- (hdr_p)->keyframes = LE_TO_BE_16((hdr_p)->keyframes); \ +- (hdr_p)->totalframes = LE_TO_BE_16((hdr_p)->totalframes); \ +- (hdr_p)->req_memory = LE_TO_BE_32((hdr_p)->req_memory); \ +- (hdr_p)->max_regions = LE_TO_BE_16((hdr_p)->max_regions); \ +- (hdr_p)->transp_num = LE_TO_BE_16((hdr_p)->transp_num); \ +- (hdr_p)->oframe1 = LE_TO_BE_32((hdr_p)->oframe1); \ +- (hdr_p)->oframe2 = LE_TO_BE_32((hdr_p)->oframe2); \ +- } while(0) +-#else +- +-#define LE_TO_BE_16(i16) ((i16)) +-#define LE_TO_BE_32(i32) ((i32)) +- +-#define FLX_FRAME_TYPE_FIX_ENDIANNESS(frm_type_p) +-#define FLX_HUFFMAN_TABLE_FIX_ENDIANNESS(hffmn_table_p) +-#define FLX_SEGMENT_TABLE_FIX_ENDIANNESS(sgmnt_table_p) +-#define FLX_PREFIX_CHUNK_FIX_ENDIANNESS(prfx_chnk_p) +-#define FLX_FRAME_CHUNK_FIX_ENDIANNESS(frm_chnk_p) +-#define FLX_HDR_FIX_ENDIANNESS(hdr_p) +- +-#endif /* G_BYTE_ORDER == G_BIG_ENDIAN */ +- + G_END_DECLS + + #endif /* __GST_FLX_FMT_H__ */ +diff --git a/gst/flx/gstflxdec.c b/gst/flx/gstflxdec.c +index a237976..aa1bed5 100644 +--- a/gst/flx/gstflxdec.c ++++ b/gst/flx/gstflxdec.c +@@ -1,5 +1,6 @@ + /* GStreamer + * Copyright (C) <1999> Erik Walthinsen <omega@temple-baptist.com> ++ * Copyright (C) <2016> Matthew Waters <matthew@centricular.com> + * + * This library is free software; you can redistribute it and/or + * modify it under the terms of the GNU Library General Public +@@ -24,6 +25,7 @@ + /* + * http://www.coolutils.com/Formats/FLI + * http://woodshole.er.usgs.gov/operations/modeling/flc.html ++ * http://www.compuphase.com/flic.htm + */ + + #ifdef HAVE_CONFIG_H +@@ -73,10 +75,14 @@ static GstStateChangeReturn gst_flxdec_change_state (GstElement * element, + static gboolean gst_flxdec_src_query_handler (GstPad * pad, GstObject * parent, + GstQuery * query); + +-static void flx_decode_color (GstFlxDec *, guchar *, guchar *, gint); +-static gboolean flx_decode_brun (GstFlxDec *, guchar *, guchar *); +-static gboolean flx_decode_delta_fli (GstFlxDec *, guchar *, guchar *); +-static gboolean flx_decode_delta_flc (GstFlxDec *, guchar *, guchar *); ++static gboolean flx_decode_color (GstFlxDec * flxdec, GstByteReader * reader, ++ GstByteWriter * writer, gint scale); ++static gboolean flx_decode_brun (GstFlxDec * flxdec, ++ GstByteReader * reader, GstByteWriter * writer); ++static gboolean flx_decode_delta_fli (GstFlxDec * flxdec, ++ GstByteReader * reader, GstByteWriter * writer); ++static gboolean flx_decode_delta_flc (GstFlxDec * flxdec, ++ GstByteReader * reader, GstByteWriter * writer); + + #define rndalign(off) ((off) + ((off) & 1)) + +@@ -204,57 +210,59 @@ gst_flxdec_sink_event_handler (GstPad * pad, GstObject * parent, + } + + static gboolean +-flx_decode_chunks (GstFlxDec * flxdec, gulong count, guchar * data, +- guchar * dest) ++flx_decode_chunks (GstFlxDec * flxdec, gulong n_chunks, GstByteReader * reader, ++ GstByteWriter * writer) + { +- FlxFrameChunk *hdr; + gboolean ret = TRUE; + +- g_return_val_if_fail (data != NULL, FALSE); +- +- while (count--) { +- hdr = (FlxFrameChunk *) data; +- FLX_FRAME_CHUNK_FIX_ENDIANNESS (hdr); +- data += FlxFrameChunkSize; ++ while (n_chunks--) { ++ GstByteReader chunk; ++ guint32 size; ++ guint16 type; ++ ++ if (!gst_byte_reader_get_uint32_le (reader, &size)) ++ goto parse_error; ++ if (!gst_byte_reader_get_uint16_le (reader, &type)) ++ goto parse_error; ++ GST_LOG_OBJECT (flxdec, "chunk has type 0x%02x size %d", type, size); ++ ++ if (!gst_byte_reader_get_sub_reader (reader, &chunk, ++ size - FlxFrameChunkSize)) { ++ GST_ERROR_OBJECT (flxdec, "Incorrect size in the chunk header"); ++ goto error; ++ } + +- switch (hdr->id) { ++ switch (type) { + case FLX_COLOR64: +- flx_decode_color (flxdec, data, dest, 2); +- data += rndalign (hdr->size) - FlxFrameChunkSize; ++ ret = flx_decode_color (flxdec, &chunk, writer, 2); + break; + + case FLX_COLOR256: +- flx_decode_color (flxdec, data, dest, 0); +- data += rndalign (hdr->size) - FlxFrameChunkSize; ++ ret = flx_decode_color (flxdec, &chunk, writer, 0); + break; + + case FLX_BRUN: +- ret = flx_decode_brun (flxdec, data, dest); +- data += rndalign (hdr->size) - FlxFrameChunkSize; ++ ret = flx_decode_brun (flxdec, &chunk, writer); + break; + + case FLX_LC: +- ret = flx_decode_delta_fli (flxdec, data, dest); +- data += rndalign (hdr->size) - FlxFrameChunkSize; ++ ret = flx_decode_delta_fli (flxdec, &chunk, writer); + break; + + case FLX_SS2: +- ret = flx_decode_delta_flc (flxdec, data, dest); +- data += rndalign (hdr->size) - FlxFrameChunkSize; ++ ret = flx_decode_delta_flc (flxdec, &chunk, writer); + break; + + case FLX_BLACK: +- memset (dest, 0, flxdec->size); ++ ret = gst_byte_writer_fill (writer, 0, flxdec->size); + break; + + case FLX_MINI: +- data += rndalign (hdr->size) - FlxFrameChunkSize; + break; + + default: +- GST_WARNING ("Unimplented chunk type: 0x%02x size: %d - skipping", +- hdr->id, hdr->size); +- data += rndalign (hdr->size) - FlxFrameChunkSize; ++ GST_WARNING ("Unimplemented chunk type: 0x%02x size: %d - skipping", ++ type, size); + break; + } + +@@ -263,43 +271,60 @@ flx_decode_chunks (GstFlxDec * flxdec, gulong count, guchar * data, + } + + return ret; ++ ++parse_error: ++ GST_ERROR_OBJECT (flxdec, "Failed to decode chunk"); ++error: ++ return FALSE; + } + + +-static void +-flx_decode_color (GstFlxDec * flxdec, guchar * data, guchar * dest, gint scale) ++static gboolean ++flx_decode_color (GstFlxDec * flxdec, GstByteReader * reader, ++ GstByteWriter * writer, gint scale) + { +- guint packs, count, indx; ++ guint8 count, indx; ++ guint16 packs; + +- g_return_if_fail (flxdec != NULL); +- +- packs = (data[0] + (data[1] << 8)); +- +- data += 2; ++ if (!gst_byte_reader_get_uint16_le (reader, &packs)) ++ goto error; + indx = 0; + +- GST_LOG ("GstFlxDec: cmap packs: %d", packs); ++ GST_LOG ("GstFlxDec: cmap packs: %d", (guint) packs); + while (packs--) { ++ const guint8 *data; ++ guint16 actual_count; ++ + /* color map index + skip count */ +- indx += *data++; ++ if (!gst_byte_reader_get_uint8 (reader, &indx)) ++ goto error; + + /* number of rgb triplets */ +- count = *data++ & 0xff; +- if (count == 0) +- count = 256; ++ if (!gst_byte_reader_get_uint8 (reader, &count)) ++ goto error; + +- GST_LOG ("GstFlxDec: cmap count: %d (indx: %d)", count, indx); +- flx_set_palette_vector (flxdec->converter, indx, count, data, scale); ++ actual_count = count == 0 ? 256 : count; + +- data += (count * 3); ++ if (!gst_byte_reader_get_data (reader, count * 3, &data)) ++ goto error; ++ ++ GST_LOG_OBJECT (flxdec, "cmap count: %d (indx: %d)", actual_count, indx); ++ flx_set_palette_vector (flxdec->converter, indx, actual_count, ++ (guchar *) data, scale); + } ++ ++ return TRUE; ++ ++error: ++ GST_ERROR_OBJECT (flxdec, "Error decoding color palette"); ++ return FALSE; + } + + static gboolean +-flx_decode_brun (GstFlxDec * flxdec, guchar * data, guchar * dest) ++flx_decode_brun (GstFlxDec * flxdec, GstByteReader * reader, ++ GstByteWriter * writer) + { +- gulong count, lines, row; +- guchar x; ++ gulong lines, row; + + g_return_val_if_fail (flxdec != NULL, FALSE); + +@@ -310,82 +335,125 @@ flx_decode_brun (GstFlxDec * flxdec, guchar * data, guchar * dest) + * contain more then 255 RLE packets. we use the frame + * width instead. + */ +- data++; ++ if (!gst_byte_reader_skip (reader, 1)) ++ goto error; + + row = flxdec->hdr.width; + while (row) { +- count = *data++; ++ gint8 count; ++ ++ if (!gst_byte_reader_get_int8 (reader, &count)) ++ goto error; ++ ++ if (count <= 0) { ++ const guint8 *data; + +- if (count > 0x7f) { + /* literal run */ +- count = 0x100 - count; +- if ((glong) row - (glong) count < 0) { +- GST_ERROR_OBJECT (flxdec, "Invalid BRUN packet detected."); ++ count = ABS (count); ++ ++ GST_LOG_OBJECT (flxdec, "have literal run of size %d", count); ++ ++ if (count > row) { ++ GST_ERROR_OBJECT (flxdec, "Invalid BRUN line detected. " ++ "bytes to write exceeds the end of the row"); + return FALSE; + } + row -= count; + +- while (count--) +- *dest++ = *data++; +- ++ if (!gst_byte_reader_get_data (reader, count, &data)) ++ goto error; ++ if (!gst_byte_writer_put_data (writer, data, count)) ++ goto error; + } else { +- if ((glong) row - (glong) count < 0) { +- GST_ERROR_OBJECT (flxdec, "Invalid BRUN packet detected."); ++ guint8 x; ++ ++ GST_LOG_OBJECT (flxdec, "have replicate run of size %d", count); ++ ++ if (count > row) { ++ GST_ERROR_OBJECT (flxdec, "Invalid BRUN packet detected." ++ "bytes to write exceeds the end of the row"); + return FALSE; + } + + /* replicate run */ + row -= count; +- x = *data++; + +- while (count--) +- *dest++ = x; ++ if (!gst_byte_reader_get_uint8 (reader, &x)) ++ goto error; ++ if (!gst_byte_writer_fill (writer, x, count)) ++ goto error; + } + } + } + + return TRUE; ++ ++error: ++ GST_ERROR_OBJECT (flxdec, "Failed to decode BRUN packet"); ++ return FALSE; + } + + static gboolean +-flx_decode_delta_fli (GstFlxDec * flxdec, guchar * data, guchar * dest) ++flx_decode_delta_fli (GstFlxDec * flxdec, GstByteReader * reader, ++ GstByteWriter * writer) + { +- gulong count, packets, lines, start_line; +- guchar *start_p, x; ++ guint16 start_line, lines; ++ guint line_start_i; + + g_return_val_if_fail (flxdec != NULL, FALSE); + g_return_val_if_fail (flxdec->delta_data != NULL, FALSE); + + /* use last frame for delta */ +- memcpy (dest, flxdec->delta_data, flxdec->size); ++ if (!gst_byte_writer_put_data (writer, flxdec->delta_data, flxdec->size)) ++ goto error; ++ ++ if (!gst_byte_reader_get_uint16_le (reader, &start_line)) ++ goto error; ++ if (!gst_byte_reader_get_uint16_le (reader, &lines)) ++ goto error; ++ GST_LOG_OBJECT (flxdec, "height %d start line %d line count %d", ++ flxdec->hdr.height, start_line, lines); + +- start_line = (data[0] + (data[1] << 8)); +- lines = (data[2] + (data[3] << 8)); + if (start_line + lines > flxdec->hdr.height) { + GST_ERROR_OBJECT (flxdec, "Invalid FLI packet detected. too many lines."); + return FALSE; + } +- data += 4; + +- /* start position of delta */ +- dest += (flxdec->hdr.width * start_line); +- start_p = dest; ++ line_start_i = flxdec->hdr.width * start_line; ++ if (!gst_byte_writer_set_pos (writer, line_start_i)) ++ goto error; + + while (lines--) { ++ guint8 packets; ++ + /* packet count */ +- packets = *data++; ++ if (!gst_byte_reader_get_uint8 (reader, &packets)) ++ goto error; ++ GST_LOG_OBJECT (flxdec, "have %d packets", packets); + + while (packets--) { + /* skip count */ +- guchar skip = *data++; +- dest += skip; ++ guint8 skip; ++ gint8 count; ++ if (!gst_byte_reader_get_uint8 (reader, &skip)) ++ goto error; ++ ++ /* skip bytes */ ++ if (!gst_byte_writer_set_pos (writer, ++ gst_byte_writer_get_pos (writer) + skip)) ++ goto error; + + /* RLE count */ +- count = *data++; ++ if (!gst_byte_reader_get_int8 (reader, &count)) ++ goto error; ++ ++ if (count < 0) { ++ guint8 x; + +- if (count > 0x7f) { + /* literal run */ +- count = 0x100 - count; ++ count = ABS (count); ++ GST_LOG_OBJECT (flxdec, "have literal run of size %d at offset %d", ++ count, skip); + + if (skip + count > flxdec->hdr.width) { + GST_ERROR_OBJECT (flxdec, "Invalid FLI packet detected. " +@@ -393,11 +461,16 @@ flx_decode_delta_fli (GstFlxDec * flxdec, guchar * data, guchar * dest) + return FALSE; + } + +- x = *data++; +- while (count--) +- *dest++ = x; +- ++ if (!gst_byte_reader_get_uint8 (reader, &x)) ++ goto error; ++ if (!gst_byte_writer_fill (writer, x, count)) ++ goto error; + } else { ++ const guint8 *data; ++ ++ GST_LOG_OBJECT (flxdec, "have replicate run of size %d at offset %d", ++ count, skip); ++ + if (skip + count > flxdec->hdr.width) { + GST_ERROR_OBJECT (flxdec, "Invalid FLI packet detected. " + "line too long."); +@@ -405,45 +478,60 @@ flx_decode_delta_fli (GstFlxDec * flxdec, guchar * data, guchar * dest) + } + + /* replicate run */ +- while (count--) +- *dest++ = *data++; ++ if (!gst_byte_reader_get_data (reader, count, &data)) ++ goto error; ++ if (!gst_byte_writer_put_data (writer, data, count)) ++ goto error; + } + } +- start_p += flxdec->hdr.width; +- dest = start_p; ++ line_start_i += flxdec->hdr.width; ++ if (!gst_byte_writer_set_pos (writer, line_start_i)) ++ goto error; + } + + return TRUE; ++ ++error: ++ GST_ERROR_OBJECT (flxdec, "Failed to decode FLI packet"); ++ return FALSE; + } + + static gboolean +-flx_decode_delta_flc (GstFlxDec * flxdec, guchar * data, guchar * dest) ++flx_decode_delta_flc (GstFlxDec * flxdec, GstByteReader * reader, ++ GstByteWriter * writer) + { +- gulong count, lines, start_l, opcode; +- guchar *start_p; ++ guint16 lines, start_l; + + g_return_val_if_fail (flxdec != NULL, FALSE); + g_return_val_if_fail (flxdec->delta_data != NULL, FALSE); + + /* use last frame for delta */ +- memcpy (dest, flxdec->delta_data, flxdec->size); ++ if (!gst_byte_writer_put_data (writer, flxdec->delta_data, flxdec->size)) ++ goto error; ++ if (!gst_byte_reader_get_uint16_le (reader, &lines)) ++ goto error; + +- lines = (data[0] + (data[1] << 8)); + if (lines > flxdec->hdr.height) { + GST_ERROR_OBJECT (flxdec, "Invalid FLC packet detected. too many lines."); + return FALSE; + } +- data += 2; + +- start_p = dest; + start_l = lines; + + while (lines) { +- dest = start_p + (flxdec->hdr.width * (start_l - lines)); ++ guint16 opcode; ++ ++ if (!gst_byte_writer_set_pos (writer, ++ flxdec->hdr.width * (start_l - lines))) ++ goto error; + + /* process opcode(s) */ +- while ((opcode = (data[0] + (data[1] << 8))) & 0xc000) { +- data += 2; ++ while (TRUE) { ++ if (!gst_byte_reader_get_uint16_le (reader, &opcode)) ++ goto error; ++ if ((opcode & 0xc000) == 0) ++ break; ++ + if ((opcode & 0xc000) == 0xc000) { + /* line skip count */ + gulong skip = (0x10000 - opcode); +@@ -453,27 +541,44 @@ flx_decode_delta_flc (GstFlxDec * flxdec, guchar * data, guchar * dest) + return FALSE; + } + start_l += skip; +- dest += flxdec->hdr.width * skip; ++ if (!gst_byte_writer_set_pos (writer, ++ gst_byte_writer_get_pos (writer) + flxdec->hdr.width * skip)) ++ goto error; + } else { + /* last pixel */ +- dest += flxdec->hdr.width; +- *dest++ = (opcode & 0xff); ++ if (!gst_byte_writer_set_pos (writer, ++ gst_byte_writer_get_pos (writer) + flxdec->hdr.width)) ++ goto error; ++ if (!gst_byte_writer_put_uint8 (writer, opcode & 0xff)) ++ goto error; + } + } +- data += 2; + + /* last opcode is the packet count */ ++ GST_LOG_OBJECT (flxdec, "have %d packets", opcode); + while (opcode--) { + /* skip count */ +- guchar skip = *data++; +- dest += skip; ++ guint8 skip; ++ gint8 count; ++ ++ if (!gst_byte_reader_get_uint8 (reader, &skip)) ++ goto error; ++ if (!gst_byte_writer_set_pos (writer, ++ gst_byte_writer_get_pos (writer) + skip)) ++ goto error; + + /* RLE count */ +- count = *data++; ++ if (!gst_byte_reader_get_int8 (reader, &count)) ++ goto error; ++ ++ if (count < 0) { ++ guint16 x; + +- if (count > 0x7f) { + /* replicate word run */ +- count = 0x100 - count; ++ count = ABS (count); ++ ++ GST_LOG_OBJECT (flxdec, "have replicate run of size %d at offset %d", ++ count, skip); + + if (skip + count > flxdec->hdr.width) { + GST_ERROR_OBJECT (flxdec, "Invalid FLC packet detected. " +@@ -481,22 +586,31 @@ flx_decode_delta_flc (GstFlxDec * flxdec, guchar * data, guchar * dest) + return FALSE; + } + ++ if (!gst_byte_reader_get_uint16_le (reader, &x)) ++ goto error; ++ + while (count--) { +- *dest++ = data[0]; +- *dest++ = data[1]; ++ if (!gst_byte_writer_put_uint16_le (writer, x)) { ++ goto error; ++ } + } +- data += 2; + } else { ++ GST_LOG_OBJECT (flxdec, "have literal run of size %d at offset %d", ++ count, skip); ++ + if (skip + count > flxdec->hdr.width) { + GST_ERROR_OBJECT (flxdec, "Invalid FLC packet detected. " + "line too long."); + return FALSE; + } + +- /* literal word run */ + while (count--) { +- *dest++ = *data++; +- *dest++ = *data++; ++ guint16 x; ++ ++ if (!gst_byte_reader_get_uint16_le (reader, &x)) ++ goto error; ++ if (!gst_byte_writer_put_uint16_le (writer, x)) ++ goto error; + } + } + } +@@ -504,13 +618,91 @@ flx_decode_delta_flc (GstFlxDec * flxdec, guchar * data, guchar * dest) + } + + return TRUE; ++ ++error: ++ GST_ERROR_OBJECT (flxdec, "Failed to decode FLI packet"); ++ return FALSE; ++} ++ ++static gboolean ++_read_flx_header (GstFlxDec * flxdec, GstByteReader * reader, FlxHeader * flxh) ++{ ++ memset (flxh, 0, sizeof (*flxh)); ++ ++ if (!gst_byte_reader_get_uint32_le (reader, &flxh->size)) ++ goto error; ++ if (flxh->size < FlxHeaderSize) { ++ GST_ERROR_OBJECT (flxdec, "Invalid file size in the header"); ++ return FALSE; ++ } ++ ++ if (!gst_byte_reader_get_uint16_le (reader, &flxh->type)) ++ goto error; ++ if (!gst_byte_reader_get_uint16_le (reader, &flxh->frames)) ++ goto error; ++ if (!gst_byte_reader_get_uint16_le (reader, &flxh->width)) ++ goto error; ++ if (!gst_byte_reader_get_uint16_le (reader, &flxh->height)) ++ goto error; ++ if (!gst_byte_reader_get_uint16_le (reader, &flxh->depth)) ++ goto error; ++ if (!gst_byte_reader_get_uint16_le (reader, &flxh->flags)) ++ goto error; ++ if (!gst_byte_reader_get_uint32_le (reader, &flxh->speed)) ++ goto error; ++ if (!gst_byte_reader_skip (reader, 2)) /* reserved */ ++ goto error; ++ /* FLC */ ++ if (!gst_byte_reader_get_uint32_le (reader, &flxh->created)) ++ goto error; ++ if (!gst_byte_reader_get_uint32_le (reader, &flxh->creator)) ++ goto error; ++ if (!gst_byte_reader_get_uint32_le (reader, &flxh->updated)) ++ goto error; ++ if (!gst_byte_reader_get_uint32_le (reader, &flxh->updater)) ++ goto error; ++ if (!gst_byte_reader_get_uint16_le (reader, &flxh->aspect_dx)) ++ goto error; ++ if (!gst_byte_reader_get_uint16_le (reader, &flxh->aspect_dy)) ++ goto error; ++ /* EGI */ ++ if (!gst_byte_reader_get_uint16_le (reader, &flxh->ext_flags)) ++ goto error; ++ if (!gst_byte_reader_get_uint16_le (reader, &flxh->keyframes)) ++ goto error; ++ if (!gst_byte_reader_get_uint16_le (reader, &flxh->totalframes)) ++ goto error; ++ if (!gst_byte_reader_get_uint32_le (reader, &flxh->req_memory)) ++ goto error; ++ if (!gst_byte_reader_get_uint16_le (reader, &flxh->max_regions)) ++ goto error; ++ if (!gst_byte_reader_get_uint16_le (reader, &flxh->transp_num)) ++ goto error; ++ if (!gst_byte_reader_skip (reader, 24)) /* reserved */ ++ goto error; ++ /* FLC */ ++ if (!gst_byte_reader_get_uint32_le (reader, &flxh->oframe1)) ++ goto error; ++ if (!gst_byte_reader_get_uint32_le (reader, &flxh->oframe2)) ++ goto error; ++ if (!gst_byte_reader_skip (reader, 40)) /* reserved */ ++ goto error; ++ ++ return TRUE; ++ ++error: ++ GST_ERROR_OBJECT (flxdec, "Error reading file header"); ++ return FALSE; + } + + static GstFlowReturn + gst_flxdec_chain (GstPad * pad, GstObject * parent, GstBuffer * buf) + { ++ GstByteReader reader; ++ GstBuffer *input; ++ GstMapInfo map_info; + GstCaps *caps; +- guint avail; ++ guint available; + GstFlowReturn res = GST_FLOW_OK; + + GstFlxDec *flxdec; +@@ -521,31 +713,50 @@ gst_flxdec_chain (GstPad * pad, GstObject * parent, GstBuffer * buf) + g_return_val_if_fail (flxdec != NULL, GST_FLOW_ERROR); + + gst_adapter_push (flxdec->adapter, buf); +- avail = gst_adapter_available (flxdec->adapter); ++ available = gst_adapter_available (flxdec->adapter); ++ input = gst_adapter_get_buffer (flxdec->adapter, available); ++ if (!gst_buffer_map (input, &map_info, GST_MAP_READ)) { ++ GST_ELEMENT_ERROR (flxdec, STREAM, DECODE, ++ ("%s", "Failed to map buffer"), (NULL)); ++ goto error; ++ } ++ gst_byte_reader_init (&reader, map_info.data, map_info.size); + + if (flxdec->state == GST_FLXDEC_READ_HEADER) { +- if (avail >= FlxHeaderSize) { +- const guint8 *data = gst_adapter_map (flxdec->adapter, FlxHeaderSize); ++ if (available >= FlxHeaderSize) { ++ GstByteReader header; + GstCaps *templ; + +- memcpy ((gchar *) & flxdec->hdr, data, FlxHeaderSize); +- FLX_HDR_FIX_ENDIANNESS (&(flxdec->hdr)); +- gst_adapter_unmap (flxdec->adapter); ++ if (!gst_byte_reader_get_sub_reader (&reader, &header, FlxHeaderSize)) { ++ GST_ELEMENT_ERROR (flxdec, STREAM, DECODE, ++ ("%s", "Could not read header"), (NULL)); ++ goto unmap_input_error; ++ } + gst_adapter_flush (flxdec->adapter, FlxHeaderSize); ++ available -= FlxHeaderSize; ++ ++ if (!_read_flx_header (flxdec, &header, &flxdec->hdr)) { ++ GST_ELEMENT_ERROR (flxdec, STREAM, DECODE, ++ ("%s", "Failed to parse header"), (NULL)); ++ goto unmap_input_error; ++ } + + flxh = &flxdec->hdr; + + /* check header */ + if (flxh->type != FLX_MAGICHDR_FLI && +- flxh->type != FLX_MAGICHDR_FLC && flxh->type != FLX_MAGICHDR_FLX) +- goto wrong_type; ++ flxh->type != FLX_MAGICHDR_FLC && flxh->type != FLX_MAGICHDR_FLX) { ++ GST_ELEMENT_ERROR (flxdec, STREAM, WRONG_TYPE, (NULL), ++ ("not a flx file (type %x)", flxh->type)); ++ goto unmap_input_error; ++ } + +- GST_LOG ("size : %d", flxh->size); +- GST_LOG ("frames : %d", flxh->frames); +- GST_LOG ("width : %d", flxh->width); +- GST_LOG ("height : %d", flxh->height); +- GST_LOG ("depth : %d", flxh->depth); +- GST_LOG ("speed : %d", flxh->speed); ++ GST_INFO_OBJECT (flxdec, "size : %d", flxh->size); ++ GST_INFO_OBJECT (flxdec, "frames : %d", flxh->frames); ++ GST_INFO_OBJECT (flxdec, "width : %d", flxh->width); ++ GST_INFO_OBJECT (flxdec, "height : %d", flxh->height); ++ GST_INFO_OBJECT (flxdec, "depth : %d", flxh->depth); ++ GST_INFO_OBJECT (flxdec, "speed : %d", flxh->speed); + + flxdec->next_time = 0; + +@@ -573,18 +784,32 @@ gst_flxdec_chain (GstPad * pad, GstObject * parent, GstBuffer * buf) + gst_pad_set_caps (flxdec->srcpad, caps); + gst_caps_unref (caps); + +- if (flxh->depth <= 8) +- flxdec->converter = +- flx_colorspace_converter_new (flxh->width, flxh->height); ++ /* zero means 8 */ ++ if (flxh->depth == 0) ++ flxh->depth = 8; ++ ++ if (flxh->depth != 8) { ++ GST_ELEMENT_ERROR (flxdec, STREAM, WRONG_TYPE, ++ ("%s", "Don't know how to decode non 8 bit depth streams"), (NULL)); ++ goto unmap_input_error; ++ } ++ ++ flxdec->converter = ++ flx_colorspace_converter_new (flxh->width, flxh->height); + + if (flxh->type == FLX_MAGICHDR_FLC || flxh->type == FLX_MAGICHDR_FLX) { +- GST_LOG ("(FLC) aspect_dx : %d", flxh->aspect_dx); +- GST_LOG ("(FLC) aspect_dy : %d", flxh->aspect_dy); +- GST_LOG ("(FLC) oframe1 : 0x%08x", flxh->oframe1); +- GST_LOG ("(FLC) oframe2 : 0x%08x", flxh->oframe2); ++ GST_INFO_OBJECT (flxdec, "(FLC) aspect_dx : %d", flxh->aspect_dx); ++ GST_INFO_OBJECT (flxdec, "(FLC) aspect_dy : %d", flxh->aspect_dy); ++ GST_INFO_OBJECT (flxdec, "(FLC) oframe1 : 0x%08x", flxh->oframe1); ++ GST_INFO_OBJECT (flxdec, "(FLC) oframe2 : 0x%08x", flxh->oframe2); + } + + flxdec->size = ((guint) flxh->width * (guint) flxh->height); ++ if (flxdec->size >= G_MAXSIZE / 4) { ++ GST_ELEMENT_ERROR (flxdec, STREAM, DECODE, ++ ("%s", "Cannot allocate required memory"), (NULL)); ++ goto unmap_input_error; ++ } + + /* create delta and output frame */ + flxdec->frame_data = g_malloc (flxdec->size); +@@ -596,55 +821,66 @@ gst_flxdec_chain (GstPad * pad, GstObject * parent, GstBuffer * buf) + GstBuffer *out; + + /* while we have enough data in the adapter */ +- while (avail >= FlxFrameChunkSize && res == GST_FLOW_OK) { +- FlxFrameChunk flxfh; +- guchar *chunk; +- const guint8 *data; +- GstMapInfo map; +- +- chunk = NULL; +- data = gst_adapter_map (flxdec->adapter, FlxFrameChunkSize); +- memcpy (&flxfh, data, FlxFrameChunkSize); +- FLX_FRAME_CHUNK_FIX_ENDIANNESS (&flxfh); +- gst_adapter_unmap (flxdec->adapter); +- +- switch (flxfh.id) { +- case FLX_FRAME_TYPE: +- /* check if we have the complete frame */ +- if (avail < flxfh.size) +- goto need_more_data; +- +- /* flush header */ +- gst_adapter_flush (flxdec->adapter, FlxFrameChunkSize); +- +- chunk = gst_adapter_take (flxdec->adapter, +- flxfh.size - FlxFrameChunkSize); +- FLX_FRAME_TYPE_FIX_ENDIANNESS ((FlxFrameType *) chunk); +- if (((FlxFrameType *) chunk)->chunks == 0) +- break; ++ while (available >= FlxFrameChunkSize && res == GST_FLOW_OK) { ++ guint32 size; ++ guint16 type; + +- /* create 32 bits output frame */ +-// res = gst_pad_alloc_buffer_and_set_caps (flxdec->srcpad, +-// GST_BUFFER_OFFSET_NONE, +-// flxdec->size * 4, GST_PAD_CAPS (flxdec->srcpad), &out); +-// if (res != GST_FLOW_OK) +-// break; ++ if (!gst_byte_reader_get_uint32_le (&reader, &size)) ++ goto parse_error; ++ if (available < size) ++ goto need_more_data; + +- out = gst_buffer_new_and_alloc (flxdec->size * 4); ++ available -= size; ++ gst_adapter_flush (flxdec->adapter, size); ++ ++ if (!gst_byte_reader_get_uint16_le (&reader, &type)) ++ goto parse_error; ++ ++ switch (type) { ++ case FLX_FRAME_TYPE:{ ++ GstByteReader chunks; ++ GstByteWriter writer; ++ guint16 n_chunks; ++ GstMapInfo map; ++ ++ GST_LOG_OBJECT (flxdec, "Have frame type 0x%02x of size %d", type, ++ size); ++ ++ if (!gst_byte_reader_get_sub_reader (&reader, &chunks, ++ size - FlxFrameChunkSize)) ++ goto parse_error; ++ ++ if (!gst_byte_reader_get_uint16_le (&chunks, &n_chunks)) ++ goto parse_error; ++ GST_LOG_OBJECT (flxdec, "Have %d chunks", n_chunks); ++ ++ if (n_chunks == 0) ++ break; ++ if (!gst_byte_reader_skip (&chunks, 8)) /* reserved */ ++ goto parse_error; ++ ++ gst_byte_writer_init_with_data (&writer, flxdec->frame_data, ++ flxdec->size, TRUE); + + /* decode chunks */ +- if (!flx_decode_chunks (flxdec, +- ((FlxFrameType *) chunk)->chunks, +- chunk + FlxFrameTypeSize, flxdec->frame_data)) { ++ if (!flx_decode_chunks (flxdec, n_chunks, &chunks, &writer)) { + GST_ELEMENT_ERROR (flxdec, STREAM, DECODE, + ("%s", "Could not decode chunk"), NULL); +- return GST_FLOW_ERROR; ++ goto unmap_input_error; + } ++ gst_byte_writer_reset (&writer); + + /* save copy of the current frame for possible delta. */ + memcpy (flxdec->delta_data, flxdec->frame_data, flxdec->size); + +- gst_buffer_map (out, &map, GST_MAP_WRITE); ++ out = gst_buffer_new_and_alloc (flxdec->size * 4); ++ if (!gst_buffer_map (out, &map, GST_MAP_WRITE)) { ++ GST_ELEMENT_ERROR (flxdec, STREAM, DECODE, ++ ("%s", "Could not map output buffer"), NULL); ++ gst_buffer_unref (out); ++ goto unmap_input_error; ++ } ++ + /* convert current frame. */ + flx_colorspace_convert (flxdec->converter, flxdec->frame_data, + map.data); +@@ -655,30 +891,32 @@ gst_flxdec_chain (GstPad * pad, GstObject * parent, GstBuffer * buf) + + res = gst_pad_push (flxdec->srcpad, out); + break; ++ } + default: +- /* check if we have the complete frame */ +- if (avail < flxfh.size) +- goto need_more_data; +- +- gst_adapter_flush (flxdec->adapter, flxfh.size); ++ GST_DEBUG_OBJECT (flxdec, "Unknown frame type 0x%02x, skipping %d", ++ type, size); ++ if (!gst_byte_reader_skip (&reader, size - FlxFrameChunkSize)) ++ goto parse_error; + break; + } +- +- g_free (chunk); +- +- avail = gst_adapter_available (flxdec->adapter); + } + } ++ ++ gst_buffer_unmap (input, &map_info); ++ gst_buffer_unref (input); ++ + need_more_data: + return res; + + /* ERRORS */ +-wrong_type: +- { +- GST_ELEMENT_ERROR (flxdec, STREAM, WRONG_TYPE, (NULL), +- ("not a flx file (type %x)", flxh->type)); +- return GST_FLOW_ERROR; +- } ++parse_error: ++ GST_ELEMENT_ERROR (flxdec, STREAM, DECODE, ++ ("%s", "Failed to parse stream"), (NULL)); ++unmap_input_error: ++ gst_buffer_unmap (input, &map_info); ++ gst_buffer_unref (input); ++error: ++ return GST_FLOW_ERROR; + } + + static GstStateChangeReturn +diff --git a/gst/flx/gstflxdec.h b/gst/flx/gstflxdec.h +index 3f9a0aa..4fd8dfd 100644 +--- a/gst/flx/gstflxdec.h ++++ b/gst/flx/gstflxdec.h +@@ -23,6 +23,8 @@ + #include <gst/gst.h> + + #include <gst/base/gstadapter.h> ++#include <gst/base/gstbytereader.h> ++#include <gst/base/gstbytewriter.h> + #include "flx_color.h" + + G_BEGIN_DECLS +@@ -45,7 +47,7 @@ struct _GstFlxDec { + + guint8 *delta_data, *frame_data; + GstAdapter *adapter; +- gulong size; ++ gsize size; + GstFlxDecState state; + gint64 frame_time; + gint64 next_time; +-- +2.10.2 + diff --git a/gnu/packages/patches/gst-plugins-good-fix-invalid-read.patch b/gnu/packages/patches/gst-plugins-good-fix-invalid-read.patch new file mode 100644 index 0000000000..1daaa2ae15 --- /dev/null +++ b/gnu/packages/patches/gst-plugins-good-fix-invalid-read.patch @@ -0,0 +1,37 @@ +Fixes upstream bug #774897 (flxdec: Unreferences itself one time too many on +invalid files): + +https://bugzilla.gnome.org/show_bug.cgi?id=774897 + +Patch copied from upstream source repository: + +https://cgit.freedesktop.org/gstreamer/gst-plugins-good/commit/?id=b31c504645a814c59d91d49e4fe218acaf93f4ca + +From b31c504645a814c59d91d49e4fe218acaf93f4ca Mon Sep 17 00:00:00 2001 +From: =?UTF-8?q?Sebastian=20Dr=C3=B6ge?= <sebastian@centricular.com> +Date: Wed, 23 Nov 2016 11:20:49 +0200 +Subject: [PATCH] flxdec: Don't unref() parent in the chain function + +We don't own the reference here, it is owned by the caller and given to +us for the scope of this function. Leftover mistake from 0.10 porting. + +https://bugzilla.gnome.org/show_bug.cgi?id=774897 +--- + gst/flx/gstflxdec.c | 1 - + 1 file changed, 1 deletion(-) + +diff --git a/gst/flx/gstflxdec.c b/gst/flx/gstflxdec.c +index e675c99..a237976 100644 +--- a/gst/flx/gstflxdec.c ++++ b/gst/flx/gstflxdec.c +@@ -677,7 +677,6 @@ wrong_type: + { + GST_ELEMENT_ERROR (flxdec, STREAM, WRONG_TYPE, (NULL), + ("not a flx file (type %x)", flxh->type)); +- gst_object_unref (flxdec); + return GST_FLOW_ERROR; + } + } +-- +2.10.2 + diff --git a/gnu/packages/patches/gst-plugins-good-fix-signedness.patch b/gnu/packages/patches/gst-plugins-good-fix-signedness.patch new file mode 100644 index 0000000000..a3e20e19dd --- /dev/null +++ b/gnu/packages/patches/gst-plugins-good-fix-signedness.patch @@ -0,0 +1,58 @@ +This is a followup fix for upstream bug #774834 (flic decoder: Buffer overflow +in flx_decode_delta_fli): + +https://bugzilla.gnome.org/show_bug.cgi?id=774834#c2 + +Patch copied from upstream source repository: + +https://cgit.freedesktop.org/gstreamer/gst-plugins-good/commit/?id=1ab2b26193861b124426e2f8eb62b75b59ec5488 + +From 1ab2b26193861b124426e2f8eb62b75b59ec5488 Mon Sep 17 00:00:00 2001 +From: Matthew Waters <matthew@centricular.com> +Date: Tue, 22 Nov 2016 23:46:00 +1100 +Subject: [PATCH] flxdec: fix some warnings comparing unsigned < 0 +MIME-Version: 1.0 +Content-Type: text/plain; charset=UTF-8 +Content-Transfer-Encoding: 8bit + +bf43f44fcfada5ec4a3ce60cb374340486fe9fac was comparing an unsigned +expression to be < 0 which was always false. + +gstflxdec.c: In function ‘flx_decode_brun’: +gstflxdec.c:322:33: warning: comparison of unsigned expression < 0 is always false [-Wtype-limits] + if ((glong) row - count < 0) { + ^ +gstflxdec.c:332:33: warning: comparison of unsigned expression < 0 is always false [-Wtype-limits] + if ((glong) row - count < 0) { + ^ + +https://bugzilla.gnome.org/show_bug.cgi?id=774834 +--- + gst/flx/gstflxdec.c | 4 ++-- + 1 file changed, 2 insertions(+), 2 deletions(-) + +diff --git a/gst/flx/gstflxdec.c b/gst/flx/gstflxdec.c +index d51a8e6..e675c99 100644 +--- a/gst/flx/gstflxdec.c ++++ b/gst/flx/gstflxdec.c +@@ -319,7 +319,7 @@ flx_decode_brun (GstFlxDec * flxdec, guchar * data, guchar * dest) + if (count > 0x7f) { + /* literal run */ + count = 0x100 - count; +- if ((glong) row - count < 0) { ++ if ((glong) row - (glong) count < 0) { + GST_ERROR_OBJECT (flxdec, "Invalid BRUN packet detected."); + return FALSE; + } +@@ -329,7 +329,7 @@ flx_decode_brun (GstFlxDec * flxdec, guchar * data, guchar * dest) + *dest++ = *data++; + + } else { +- if ((glong) row - count < 0) { ++ if ((glong) row - (glong) count < 0) { + GST_ERROR_OBJECT (flxdec, "Invalid BRUN packet detected."); + return FALSE; + } +-- +2.10.2 + diff --git a/gnu/packages/patches/gst-plugins-good-flic-bounds-check.patch b/gnu/packages/patches/gst-plugins-good-flic-bounds-check.patch new file mode 100644 index 0000000000..f77dca2cd6 --- /dev/null +++ b/gnu/packages/patches/gst-plugins-good-flic-bounds-check.patch @@ -0,0 +1,319 @@ +Fix CVE-2016-{9634,9635,9636}. + +https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2016-9634 +https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2016-9635 +https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2016-9636 + +This fixes upstream bug #774834 (flic decoder: Buffer overflow in +flx_decode_delta_fli): + +https://bugzilla.gnome.org/show_bug.cgi?id=774834 + +Patch copied from upstream source repository: + +https://cgit.freedesktop.org/gstreamer/gst-plugins-good/commit/?id=2e203a79b7d9af4029307c1a845b3c148d5f5e62 + +From 2e203a79b7d9af4029307c1a845b3c148d5f5e62 Mon Sep 17 00:00:00 2001 +From: Matthew Waters <matthew@centricular.com> +Date: Tue, 22 Nov 2016 19:05:00 +1100 +Subject: [PATCH] flxdec: add some write bounds checking + +Without checking the bounds of the frame we are writing into, we can +write off the end of the destination buffer. + +https://scarybeastsecurity.blogspot.dk/2016/11/0day-exploit-advancing-exploitation.html + +https://bugzilla.gnome.org/show_bug.cgi?id=774834 +--- + gst/flx/gstflxdec.c | 116 +++++++++++++++++++++++++++++++++++++++++----------- + 1 file changed, 91 insertions(+), 25 deletions(-) + +diff --git a/gst/flx/gstflxdec.c b/gst/flx/gstflxdec.c +index 604be2f..d51a8e6 100644 +--- a/gst/flx/gstflxdec.c ++++ b/gst/flx/gstflxdec.c +@@ -74,9 +74,9 @@ static gboolean gst_flxdec_src_query_handler (GstPad * pad, GstObject * parent, + GstQuery * query); + + static void flx_decode_color (GstFlxDec *, guchar *, guchar *, gint); +-static void flx_decode_brun (GstFlxDec *, guchar *, guchar *); +-static void flx_decode_delta_fli (GstFlxDec *, guchar *, guchar *); +-static void flx_decode_delta_flc (GstFlxDec *, guchar *, guchar *); ++static gboolean flx_decode_brun (GstFlxDec *, guchar *, guchar *); ++static gboolean flx_decode_delta_fli (GstFlxDec *, guchar *, guchar *); ++static gboolean flx_decode_delta_flc (GstFlxDec *, guchar *, guchar *); + + #define rndalign(off) ((off) + ((off) & 1)) + +@@ -203,13 +203,14 @@ gst_flxdec_sink_event_handler (GstPad * pad, GstObject * parent, + return ret; + } + +-static void ++static gboolean + flx_decode_chunks (GstFlxDec * flxdec, gulong count, guchar * data, + guchar * dest) + { + FlxFrameChunk *hdr; ++ gboolean ret = TRUE; + +- g_return_if_fail (data != NULL); ++ g_return_val_if_fail (data != NULL, FALSE); + + while (count--) { + hdr = (FlxFrameChunk *) data; +@@ -228,17 +229,17 @@ flx_decode_chunks (GstFlxDec * flxdec, gulong count, guchar * data, + break; + + case FLX_BRUN: +- flx_decode_brun (flxdec, data, dest); ++ ret = flx_decode_brun (flxdec, data, dest); + data += rndalign (hdr->size) - FlxFrameChunkSize; + break; + + case FLX_LC: +- flx_decode_delta_fli (flxdec, data, dest); ++ ret = flx_decode_delta_fli (flxdec, data, dest); + data += rndalign (hdr->size) - FlxFrameChunkSize; + break; + + case FLX_SS2: +- flx_decode_delta_flc (flxdec, data, dest); ++ ret = flx_decode_delta_flc (flxdec, data, dest); + data += rndalign (hdr->size) - FlxFrameChunkSize; + break; + +@@ -256,7 +257,12 @@ flx_decode_chunks (GstFlxDec * flxdec, gulong count, guchar * data, + data += rndalign (hdr->size) - FlxFrameChunkSize; + break; + } ++ ++ if (!ret) ++ break; + } ++ ++ return ret; + } + + +@@ -289,13 +295,13 @@ flx_decode_color (GstFlxDec * flxdec, guchar * data, guchar * dest, gint scale) + } + } + +-static void ++static gboolean + flx_decode_brun (GstFlxDec * flxdec, guchar * data, guchar * dest) + { + gulong count, lines, row; + guchar x; + +- g_return_if_fail (flxdec != NULL); ++ g_return_val_if_fail (flxdec != NULL, FALSE); + + lines = flxdec->hdr.height; + while (lines--) { +@@ -313,12 +319,21 @@ flx_decode_brun (GstFlxDec * flxdec, guchar * data, guchar * dest) + if (count > 0x7f) { + /* literal run */ + count = 0x100 - count; ++ if ((glong) row - count < 0) { ++ GST_ERROR_OBJECT (flxdec, "Invalid BRUN packet detected."); ++ return FALSE; ++ } + row -= count; + + while (count--) + *dest++ = *data++; + + } else { ++ if ((glong) row - count < 0) { ++ GST_ERROR_OBJECT (flxdec, "Invalid BRUN packet detected."); ++ return FALSE; ++ } ++ + /* replicate run */ + row -= count; + x = *data++; +@@ -328,22 +343,28 @@ flx_decode_brun (GstFlxDec * flxdec, guchar * data, guchar * dest) + } + } + } ++ ++ return TRUE; + } + +-static void ++static gboolean + flx_decode_delta_fli (GstFlxDec * flxdec, guchar * data, guchar * dest) + { + gulong count, packets, lines, start_line; + guchar *start_p, x; + +- g_return_if_fail (flxdec != NULL); +- g_return_if_fail (flxdec->delta_data != NULL); ++ g_return_val_if_fail (flxdec != NULL, FALSE); ++ g_return_val_if_fail (flxdec->delta_data != NULL, FALSE); + + /* use last frame for delta */ + memcpy (dest, flxdec->delta_data, flxdec->size); + + start_line = (data[0] + (data[1] << 8)); + lines = (data[2] + (data[3] << 8)); ++ if (start_line + lines > flxdec->hdr.height) { ++ GST_ERROR_OBJECT (flxdec, "Invalid FLI packet detected. too many lines."); ++ return FALSE; ++ } + data += 4; + + /* start position of delta */ +@@ -356,7 +377,8 @@ flx_decode_delta_fli (GstFlxDec * flxdec, guchar * data, guchar * dest) + + while (packets--) { + /* skip count */ +- dest += *data++; ++ guchar skip = *data++; ++ dest += skip; + + /* RLE count */ + count = *data++; +@@ -364,12 +386,24 @@ flx_decode_delta_fli (GstFlxDec * flxdec, guchar * data, guchar * dest) + if (count > 0x7f) { + /* literal run */ + count = 0x100 - count; +- x = *data++; + ++ if (skip + count > flxdec->hdr.width) { ++ GST_ERROR_OBJECT (flxdec, "Invalid FLI packet detected. " ++ "line too long."); ++ return FALSE; ++ } ++ ++ x = *data++; + while (count--) + *dest++ = x; + + } else { ++ if (skip + count > flxdec->hdr.width) { ++ GST_ERROR_OBJECT (flxdec, "Invalid FLI packet detected. " ++ "line too long."); ++ return FALSE; ++ } ++ + /* replicate run */ + while (count--) + *dest++ = *data++; +@@ -378,21 +412,27 @@ flx_decode_delta_fli (GstFlxDec * flxdec, guchar * data, guchar * dest) + start_p += flxdec->hdr.width; + dest = start_p; + } ++ ++ return TRUE; + } + +-static void ++static gboolean + flx_decode_delta_flc (GstFlxDec * flxdec, guchar * data, guchar * dest) + { + gulong count, lines, start_l, opcode; + guchar *start_p; + +- g_return_if_fail (flxdec != NULL); +- g_return_if_fail (flxdec->delta_data != NULL); ++ g_return_val_if_fail (flxdec != NULL, FALSE); ++ g_return_val_if_fail (flxdec->delta_data != NULL, FALSE); + + /* use last frame for delta */ + memcpy (dest, flxdec->delta_data, flxdec->size); + + lines = (data[0] + (data[1] << 8)); ++ if (lines > flxdec->hdr.height) { ++ GST_ERROR_OBJECT (flxdec, "Invalid FLC packet detected. too many lines."); ++ return FALSE; ++ } + data += 2; + + start_p = dest; +@@ -405,9 +445,15 @@ flx_decode_delta_flc (GstFlxDec * flxdec, guchar * data, guchar * dest) + while ((opcode = (data[0] + (data[1] << 8))) & 0xc000) { + data += 2; + if ((opcode & 0xc000) == 0xc000) { +- /* skip count */ +- start_l += (0x10000 - opcode); +- dest += flxdec->hdr.width * (0x10000 - opcode); ++ /* line skip count */ ++ gulong skip = (0x10000 - opcode); ++ if (skip > flxdec->hdr.height) { ++ GST_ERROR_OBJECT (flxdec, "Invalid FLC packet detected. " ++ "skip line count too big."); ++ return FALSE; ++ } ++ start_l += skip; ++ dest += flxdec->hdr.width * skip; + } else { + /* last pixel */ + dest += flxdec->hdr.width; +@@ -419,7 +465,8 @@ flx_decode_delta_flc (GstFlxDec * flxdec, guchar * data, guchar * dest) + /* last opcode is the packet count */ + while (opcode--) { + /* skip count */ +- dest += *data++; ++ guchar skip = *data++; ++ dest += skip; + + /* RLE count */ + count = *data++; +@@ -427,12 +474,25 @@ flx_decode_delta_flc (GstFlxDec * flxdec, guchar * data, guchar * dest) + if (count > 0x7f) { + /* replicate word run */ + count = 0x100 - count; ++ ++ if (skip + count > flxdec->hdr.width) { ++ GST_ERROR_OBJECT (flxdec, "Invalid FLC packet detected. " ++ "line too long."); ++ return FALSE; ++ } ++ + while (count--) { + *dest++ = data[0]; + *dest++ = data[1]; + } + data += 2; + } else { ++ if (skip + count > flxdec->hdr.width) { ++ GST_ERROR_OBJECT (flxdec, "Invalid FLC packet detected. " ++ "line too long."); ++ return FALSE; ++ } ++ + /* literal word run */ + while (count--) { + *dest++ = *data++; +@@ -442,6 +502,8 @@ flx_decode_delta_flc (GstFlxDec * flxdec, guchar * data, guchar * dest) + } + lines--; + } ++ ++ return TRUE; + } + + static GstFlowReturn +@@ -571,9 +633,13 @@ gst_flxdec_chain (GstPad * pad, GstObject * parent, GstBuffer * buf) + out = gst_buffer_new_and_alloc (flxdec->size * 4); + + /* decode chunks */ +- flx_decode_chunks (flxdec, +- ((FlxFrameType *) chunk)->chunks, +- chunk + FlxFrameTypeSize, flxdec->frame_data); ++ if (!flx_decode_chunks (flxdec, ++ ((FlxFrameType *) chunk)->chunks, ++ chunk + FlxFrameTypeSize, flxdec->frame_data)) { ++ GST_ELEMENT_ERROR (flxdec, STREAM, DECODE, ++ ("%s", "Could not decode chunk"), NULL); ++ return GST_FLOW_ERROR; ++ } + + /* save copy of the current frame for possible delta. */ + memcpy (flxdec->delta_data, flxdec->frame_data, flxdec->size); +-- +2.10.2 + diff --git a/gnu/packages/patches/ldc-disable-tests.patch b/gnu/packages/patches/ldc-disable-tests.patch index 3f5e6c29a1..bdd6e5b76c 100644 --- a/gnu/packages/patches/ldc-disable-tests.patch +++ b/gnu/packages/patches/ldc-disable-tests.patch @@ -4,19 +4,9 @@ two others use networking. Not bad out of almost 700 tests! by Pjotr Prins <pjotr.guix@thebird.nl> -diff --git a/std/datetime.d b/std/datetime.d -index 8e4ed3b..6c15bc5 100644 ---- a/std/datetime.d -+++ b/std/datetime.d -@@ -28018,6 +28018,7 @@ public: - The default directory where the TZ Database files are. It's empty - for Windows, since Windows doesn't have them. - +/ -+ - enum defaultTZDatabaseDir = "/usr/share/zoneinfo/"; - } - else version(Windows) -@@ -28069,14 +28070,13 @@ assert(tz.dstName == "PDT"); +--- a/std/datetime.d.orig 2016-11-24 01:13:52.584495545 +0100 ++++ b/std/datetime.d 2016-11-24 01:17:09.655306728 +0100 +@@ -28081,22 +28081,24 @@ import std.range : retro; import std.format : format; @@ -25,9 +15,20 @@ index 8e4ed3b..6c15bc5 100644 enforce(tzDatabaseDir.exists(), new DateTimeException(format("Directory %s does not exist.", tzDatabaseDir))); enforce(tzDatabaseDir.isDir, new DateTimeException(format("%s is not a directory.", tzDatabaseDir))); -- immutable file = buildNormalizedPath(tzDatabaseDir, name); -+ auto filename = "./" ~ strip(name); // make sure the prefix is not stripped -+ immutable file = buildNormalizedPath(tzDatabaseDir, filename); + version(Android) + { ++ name = strip(name); + auto tzfileOffset = name in tzdataIndex(tzDatabaseDir); + enforce(tzfileOffset, new DateTimeException(format("The time zone %s is not listed.", name))); + string tzFilename = separate_index ? "zoneinfo.dat" : "tzdata"; + immutable file = buildNormalizedPath(tzDatabaseDir, tzFilename); + } + else +- immutable file = buildNormalizedPath(tzDatabaseDir, name); ++ { ++ auto filename = "./" ~ strip(name); // make sure the prefix is not stripped ++ immutable file = buildNormalizedPath(tzDatabaseDir, filename); ++ } - enforce(file.exists(), new DateTimeException(format("File %s does not exist.", file))); + enforce(file.exists(), new DateTimeException(format("File %s does not exist in %s.", file, tzDatabaseDir))); @@ -54,23 +55,6 @@ diff --git a/std/socket.d b/std/socket.d index b85d1c9..7fbf346 100644 --- a/std/socket.d +++ b/std/socket.d -@@ -517,6 +517,8 @@ class Protocol - - unittest - { -+ pragma(msg, "test disabled on GNU Guix"); -+/* - // getprotobyname,number are unimplemented on Android - softUnittest({ - Protocol proto = new Protocol; -@@ -530,6 +532,7 @@ unittest - assert(proto.name == "tcp"); - assert(proto.aliases.length == 1 && proto.aliases[0] == "TCP"); - }); -+*/ - } - - @@ -859,6 +862,8 @@ class InternetHost unittest diff --git a/gnu/packages/patches/python-2.7-site-prefixes.patch b/gnu/packages/patches/python-2.7-site-prefixes.patch new file mode 100644 index 0000000000..9e3066508f --- /dev/null +++ b/gnu/packages/patches/python-2.7-site-prefixes.patch @@ -0,0 +1,26 @@ +Add all /gnu/store/ prefixes found in PYTHONPATH to the prefixes where +site-packages (and .pth files) are searched. + +*** Python-2.7.11/Lib/site.py.orig 2016-10-17 23:27:23.746149690 +0200 +--- Python-2.7.11/Lib/site.py 2016-10-17 23:44:51.930871644 +0200 +*************** +*** 65,70 **** +--- 65,82 ---- + + # Prefixes for site-packages; add additional prefixes like /usr/local here + PREFIXES = [sys.prefix, sys.exec_prefix] ++ # Guix: Add all /gnu/store-paths in PYTHONPATH--these are all ++ # "prefixes". This is required to search .pth files in all python ++ # packages contained in /gnu/store which is required to make ++ # .pth-defined namespace packages work. ++ # This is necessary if the packages are not merged into a single ++ # `site-packages` directory (like when using `guix environment`) but ++ # listed in PYTHONPATH (like when running `guix build`). ++ for p in sys.path: ++ if p.startswith('/gnu/store/'): ++ PREFIXES.append(p[:p.find('/', 44)]) # find first pathsep after hash ++ del p ++ + # Enable per user site-packages directory + # set it to False to disable the feature or True to force the feature + ENABLE_USER_SITE = None diff --git a/gnu/packages/patches/python-rarfile-fix-tests.patch b/gnu/packages/patches/python-rarfile-fix-tests.patch deleted file mode 100644 index 8ae8894009..0000000000 --- a/gnu/packages/patches/python-rarfile-fix-tests.patch +++ /dev/null @@ -1,14 +0,0 @@ -There is no test.sh, but there are test1.sh and test2.sh. - -diff --git a/test/Makefile b/test/Makefile -index 027bc5f..5383db3 100644 ---- a/test/Makefile -+++ b/test/Makefile -@@ -1,5 +1,6 @@ - test: -- ./test.sh -+ ./test1.sh -+ ./test2.sh - - clean: - rm -rf __pycache__ diff --git a/gnu/packages/pciutils.scm b/gnu/packages/pciutils.scm index 553e3f8cac..8422a5c574 100644 --- a/gnu/packages/pciutils.scm +++ b/gnu/packages/pciutils.scm @@ -30,7 +30,7 @@ (define-public pciutils (package (name "pciutils") - (version "3.5.1") + (version "3.5.2") (source (origin (method url-fetch) (uri (string-append @@ -38,7 +38,7 @@ version ".tar.xz")) (sha256 (base32 - "0byl2f897w5lhs4bvr6p7qwcz9bllj2zyfv7nywbcbsnb9ha9wrb")))) + "1z2y4f3cyvm7a0dyan0n6jpb3p9pvh35lrim0058slj0kwd1969s")))) (build-system gnu-build-system) (arguments '(#:phases diff --git a/gnu/packages/pdf.scm b/gnu/packages/pdf.scm index 39f4d021de..b95fe5e0cf 100644 --- a/gnu/packages/pdf.scm +++ b/gnu/packages/pdf.scm @@ -95,6 +95,17 @@ ;; To build poppler-glib (as needed by Evince), we need Cairo and ;; GLib. But of course, that Cairo must not depend on Poppler. ("cairo" ,(package (inherit cairo) + (replacement + (package + (inherit cairo) + (replacement #f) + (source + (origin + (inherit (package-source cairo)) + (patches (search-patches + "cairo-CVE-2016-9082.patch")))) + (inputs (alist-delete "poppler" + (package-inputs cairo))))) (inputs (alist-delete "poppler" (package-inputs cairo))))) ("glib" ,glib))) @@ -638,11 +649,6 @@ using a stylus.") (base32 "0rz2pg04wnzjjm2f5a8ik9v8s54mv4xrjhv5liqjijqv6awh12gl")))) (build-system python-build-system) - (arguments - ;; Prevent creation of the egg. Without this flag, various artifacts - ;; from the build inputs end up in the final python3 output. It also - ;; works around https://debbugs.gnu.org/cgi/bugreport.cgi?bug=20765 . - `(#:configure-flags '("--single-version-externally-managed" "--root=/"))) (propagated-inputs `(("python-pillow" ,python-pillow))) (home-page "http://www.reportlab.com") @@ -650,14 +656,10 @@ using a stylus.") (description "This is the ReportLab PDF Toolkit. It allows rapid creation of rich PDF documents, and also creation of charts in a variety of bitmap and vector formats.") - (license license:bsd-3) - (properties `((python2-variant . ,(delay python2-reportlab)))))) + (license license:bsd-3))) (define-public python2-reportlab - (package - (inherit (package-with-python2 - (strip-python2-variant python-reportlab))) - (native-inputs `(("python2-pip" ,python2-pip))))) + (package-with-python2 python-reportlab)) (define-public impressive (package @@ -873,8 +875,6 @@ python-pypdf2 instead.") (inputs ;; pdfposter 0.6.0 still uses the old pyPdf `(("python2-pypdf" ,python2-pypdf))) - (native-inputs - `(("python2-setuptools" ,python2-setuptools))) (home-page "https://pythonhosted.org/pdftools.pdfposter/") (synopsis "Scale and tile PDF images/pages to print on multiple pages") (description "@command{pdfposter} can be used to create a large poster by diff --git a/gnu/packages/perl-web.scm b/gnu/packages/perl-web.scm new file mode 100644 index 0000000000..9c92a95dad --- /dev/null +++ b/gnu/packages/perl-web.scm @@ -0,0 +1,47 @@ +;;; GNU Guix --- Functional package management for GNU +;;; Copyright © 2016 Ricardo Wurmus <rekado@elephly.net> +;;; +;;; This file is part of GNU Guix. +;;; +;;; GNU Guix is free software; you can redistribute it and/or modify it +;;; under the terms of the GNU General Public License as published by +;;; the Free Software Foundation; either version 3 of the License, or (at +;;; your option) any later version. +;;; +;;; GNU Guix is distributed in the hope that it will be useful, but +;;; WITHOUT ANY WARRANTY; without even the implied warranty of +;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +;;; GNU General Public License for more details. +;;; +;;; You should have received a copy of the GNU General Public License +;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. + +(define-module (gnu packages perl-web) + #:use-module ((guix licenses) #:prefix license:) + #:use-module (gnu packages) + #:use-module (guix packages) + #:use-module (guix download) + #:use-module (guix build-system perl)) + +(define-public perl-mojolicious + (package + (name "perl-mojolicious") + (version "7.10") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://cpan/authors/id/S/SR/SRI/Mojolicious-" + version ".tar.gz")) + (sha256 + (base32 + "0811f3wajgf71y02dr2khqnaswjh582pcvhv93k101qpg61syihn")))) + (build-system perl-build-system) + (home-page "http://mojolicious.org/") + (synopsis "Real-time web framework") + (description "Back in the early days of the web, many people learned Perl +because of a wonderful Perl library called @code{CGI}. It was simple enough +to get started without knowing much about the language and powerful enough to +keep you going, learning by doing was much fun. While most of the techniques +used are outdated now, the idea behind it is not. Mojolicious is a new +endeavor to implement this idea using modern technologies.") + (license license:artistic2.0))) diff --git a/gnu/packages/perl.scm b/gnu/packages/perl.scm index e9f3dca15a..d54b2bcb2f 100644 --- a/gnu/packages/perl.scm +++ b/gnu/packages/perl.scm @@ -34,7 +34,8 @@ #:use-module (guix packages) #:use-module (guix download) #:use-module (guix build-system gnu) - #:use-module (guix build-system perl)) + #:use-module (guix build-system perl) + #:use-module (gnu packages perl-web)) ;;; ;;; Please: Try to add new module packages in alphabetic order. @@ -266,6 +267,33 @@ manipulate, read, and write Zip archive files.") list manipulation routines.") (license (package-license perl)))) +(define-public perl-autovivification + (package + (name "perl-autovivification") + (version "0.16") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://cpan/authors/id/V/VP/VPIT/" + "autovivification-" version ".tar.gz")) + (sha256 + (base32 + "1422kw9fknv7rbjkgdfflg1q3mb69d3yryszp38dn0bgzkqhwkc1")))) + (build-system perl-build-system) + (home-page "http://search.cpan.org/dist/autovivification") + (synopsis "Lexically disable autovivification") + (description "When an undefined variable is dereferenced, it gets silently +upgraded to an array or hash reference (depending of the type of the +dereferencing). This behaviour is called autovivification and usually does +what you mean but it may be unnatural or surprising because your variables get +populated behind your back. This is especially true when several levels of +dereferencing are involved, in which case all levels are vivified up to the +last, or when it happens in intuitively read-only constructs like +@code{exists}. The pragma provided by this package lets you disable +autovivification for some constructs and optionally throws a warning or an +error when it would have happened.") + (license (package-license perl)))) + (define-public perl-base (package (name "perl-base") @@ -380,6 +408,88 @@ library can nevertheless be used stand-alone, without Perl.") special objects: true and false.") (license (package-license perl)))) +(define-public perl-business-isbn-data + (package + (name "perl-business-isbn-data") + (version "20140910.003") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://cpan/authors/id/B/BD/BDFOY/" + "Business-ISBN-Data-" version ".tar.gz")) + (sha256 + (base32 + "1jc5jrjwkr6pqga7998zkgw0yrxgb5n1y7lzgddawxibkf608mn7")))) + (build-system perl-build-system) + (home-page "http://search.cpan.org/dist/Business-ISBN-Data") + (synopsis "Data files for Business::ISBN") + (description "This package provides a data pack for @code{Business::ISBN}. +These data are generated from the RangeMessage.xml file provided by the ISBN +Agency.") + (license (package-license perl)))) + +(define-public perl-business-isbn + (package + (name "perl-business-isbn") + (version "3.003") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://cpan/authors/id/B/BD/BDFOY/" + "Business-ISBN-" version ".tar.gz")) + (sha256 + (base32 + "1i2bxzqkki257rqbswa4ryj1grmwa5s47wrxln2ff5mha1ry31gm")))) + (build-system perl-build-system) + (propagated-inputs + `(("perl-business-isbn-data" ,perl-business-isbn-data) + ("perl-mojolicious" ,perl-mojolicious))) + (home-page "http://search.cpan.org/dist/Business-ISBN") + (synopsis "Work with International Standard Book Numbers") + (description "This modules provides tools to deal with International +Standard Book Numbers, including ISBN-10 and ISBN-13.") + (license artistic2.0))) + +(define-public perl-business-issn + (package + (name "perl-business-issn") + (version "0.91") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://cpan/authors/id/B/BD/BDFOY/" + "Business-ISSN-" version ".tar.gz")) + (sha256 + (base32 + "1dfnm7h7lbqj356700ldlmgbr51v6hyjn1qig2bb4ysl1wn1jnzi")))) + (build-system perl-build-system) + (home-page "http://search.cpan.org/dist/Business-ISSN") + (synopsis "Work with International Standard Serial Numbers") + (description "This modules provides tools to deal with International +Standard Serial Numbers.") + (license (package-license perl)))) + +(define-public perl-business-ismn + (package + (name "perl-business-ismn") + (version "1.13") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://cpan/authors/id/B/BD/BDFOY/" + "Business-ISMN-" version ".tar.gz")) + (sha256 + (base32 + "0cm1v75axg4gp6cnbyavmnqqjscsxh7nc60vcbw34rqivvf9idc9")))) + (build-system perl-build-system) + (native-inputs + `(("perl-tie-cycle" ,perl-tie-cycle))) + (home-page "http://search.cpan.org/dist/Business-ISMN") + (synopsis "Work with International Standard Music Numbers") + (description "This modules provides tools to deal with International +Standard Music Numbers.") + (license (package-license perl)))) + (define-public perl-cache-cache (package (name "perl-cache-cache") @@ -1200,6 +1310,47 @@ functions and data structures for processing and analysing genomic and bioinformatics data.") (license gpl3+))) +(define-public perl-data-compare + (package + (name "perl-data-compare") + (version "1.25") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://cpan/authors/id/D/DC/DCANTRELL/" + "Data-Compare-" version ".tar.gz")) + (sha256 + (base32 + "0wzasidg9yjcfsi2gdiaw6726ikqda7n24n0v2ngpaazakdkcjqx")))) + (build-system perl-build-system) + (propagated-inputs + `(("perl-file-find-rule" ,perl-file-find-rule))) + (home-page "http://search.cpan.org/dist/Data-Compare") + (synopsis "Compare Perl data structures") + (description "This module compares arbitrary data structures to see if +they are copies of each other.") + (license (package-license perl)))) + +(define-public perl-data-uniqid + (package + (name "perl-data-uniqid") + (version "0.12") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://cpan/authors/id/M/MW/MWX/Data-Uniqid-" + version ".tar.gz")) + (sha256 + (base32 + "1jsc6acmv97pzsvx1fqywz4qvxxpp7kwmb78ygyqpsczkfj9p4dn")))) + (build-system perl-build-system) + (home-page "http://search.cpan.org/dist/Data-Uniqid") + (synopsis "Perl extension for generating unique identifiers") + (description "@code{Data::Uniqid} provides three simple routines for +generating unique ids. These ids are coded with a Base62 systen to make them +short and handy (e.g. to use it as part of a URL).") + (license (package-license perl)))) + (define-public perl-data-dump (package (name "perl-data-dump") @@ -1468,6 +1619,28 @@ operations, such as comparing two times, determining a date a given amount of time from another, or parsing international times.") (license (package-license perl)))) +(define-public perl-date-simple + (package + (name "perl-date-simple") + (version "3.03") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://cpan/authors/id/I/IZ/IZUT/" + "Date-Simple-" version ".tar.gz")) + (sha256 + (base32 + "016x17r9wi6ffdc4idwirzd1sxqcb4lmq5fn2aiq25nf2iir5899")))) + (build-system perl-build-system) + (home-page "http://search.cpan.org/dist/Date-Simple") + (synopsis "Simple date handling") + (description "Dates are complex enough without times and timezones. This +module may be used to create simple date objects. It handles validation, +interval arithmetic, and day-of-week calculation. It does not deal with +hours, minutes, seconds, and time zones.") + ;; Can be used with either license. + (license (list (package-license perl) gpl2+)))) + (define-public perl-datetime (package (name "perl-datetime") @@ -1497,6 +1670,30 @@ combinations. It represents the Gregorian calendar, extended backwards in time before its creation (in 1582).") (license artistic2.0))) +(define-public perl-datetime-calendar-julian + (package + (name "perl-datetime-calendar-julian") + (version "0.04") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://cpan/authors/id/P/PI/PIJLL/" + "DateTime-Calendar-Julian-" version ".tar.gz")) + (sha256 + (base32 + "03h0llkwsiw2d2ci1ah5x9sp8xrvnbgd471i5hnpgl5w32nnhndv")))) + (build-system perl-build-system) + ;; Only needed for tests + (native-inputs + `(("perl-datetime" ,perl-datetime))) + (home-page "http://search.cpan.org/dist/DateTime-Calendar-Julian") + (synopsis "Dates in the Julian calendar") + (description "This package is a companion module to @code{DateTime.pm}. +It implements the Julian calendar. It supports everything that +@code{DateTime.pm} supports and more: about one day per century more, to be +precise.") + (license (package-license perl)))) + (define-public perl-datetime-set (package (name "perl-datetime-set") @@ -2125,6 +2322,86 @@ SHA-1 message digest algorithm for use by Perl programs.") modules separately and deal with them after the module is done installing.") (license (package-license perl)))) +(define-public perl-encode-detect + (package + (name "perl-encode-detect") + (version "1.01") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://cpan/authors/id/J/JG/JGMYERS/" + "Encode-Detect-" version ".tar.gz")) + (sha256 + (base32 + "1wdv9ffgs4xyfh5dnh09dqkmmlbf5m1hxgdgb3qy6v6vlwx8jkc3")))) + (build-system perl-build-system) + (native-inputs + `(("perl-module-build" ,perl-module-build))) + (home-page "http://search.cpan.org/dist/Encode-Detect") + (synopsis "Detect the encoding of data") + (description "This package provides a class @code{Encode::Detect} to detect +the encoding of data.") + (license mpl1.1))) + +(define-public perl-encode-eucjpascii + (package + (name "perl-encode-eucjpascii") + (version "0.03") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://cpan/authors/id/N/NE/NEZUMI/" + "Encode-EUCJPASCII-" version ".tar.gz")) + (sha256 + (base32 + "0qg8kmi7r9jcf8326b4fyq5sdpqyim2a11h7j77q577xam6x767r")))) + (build-system perl-build-system) + (home-page "http://search.cpan.org/dist/Encode-EUCJPASCII") + (synopsis "ASCII mapping for eucJP encoding") + (description "This package provides an ASCII mapping for the eucJP +encoding.") + (license (package-license perl)))) + +(define-public perl-encode-jis2k + (package + (name "perl-encode-jis2k") + (version "0.03") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://cpan/authors/id/D/DA/DANKOGAI/" + "Encode-JIS2K-" version ".tar.gz")) + (sha256 + (base32 + "1k1mdj4rd9m1z4h7qd2dl92ky0r1rk7mmagwsvdb9pirvdr4vj0y")))) + (build-system perl-build-system) + (home-page "http://search.cpan.org/dist/Encode-JIS2K") + (synopsis "JIS X 0212 (aka JIS 2000) encodings") + (description "This package provides encodings for JIS X 0212, which is +also known as JIS 2000.") + (license (package-license perl)))) + +(define-public perl-encode-hanextra + (package + (name "perl-encode-hanextra") + (version "0.23") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://cpan/authors/id/A/AU/AUDREYT/" + "Encode-HanExtra-" version ".tar.gz")) + (sha256 + (base32 + "0fj4vd8iva2i0j6s2fyhwgr9afrvhr6gjlzi7805h257mmnb1m0z")))) + (build-system perl-build-system) + (home-page "http://search.cpan.org/dist/Encode-HanExtra") + (synopsis "Additional Chinese encodings") + (description "This Perl module provides Chinese encodings that are not +part of Perl by default, including \"BIG5-1984\", \"BIG5-2003\", \"BIG5PLUS\", +\"BIG5EXT\", \"CCCII\", \"EUC-TW\", \"CNS11643-*\", \"GB18030\", and +\"UNISYS\".") + (license expat))) + (define-public perl-env-path (package (name "perl-env-path") @@ -2325,6 +2602,29 @@ it ties together a family of modern toolchain modules.") module building modules.") (license (package-license perl)))) +(define-public perl-extutils-libbuilder + (package + (name "perl-extutils-libbuilder") + (version "0.08") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://cpan/authors/id/A/AM/AMBS/" + "ExtUtils-LibBuilder-" version ".tar.gz")) + (sha256 + (base32 + "1lmmfcjxvsvhn4f3v2lyylgr8dzcf5j7mnd1pkq3jc75dph724f5")))) + (build-system perl-build-system) + (native-inputs + `(("perl-module-build" ,perl-module-build))) + (home-page "http://search.cpan.org/dist/ExtUtils-LibBuilder") + (synopsis "Tool to build C libraries") + (description "Some Perl modules need to ship C libraries together with +their Perl code. Although there are mechanisms to compile and link (or glue) +C code in your Perl programs, there isn't a clear method to compile standard, +self-contained C libraries. This module main goal is to help in that task.") + (license (package-license perl)))) + (define-public perl-file-changenotify (package (name "perl-file-changenotify") @@ -3023,6 +3323,26 @@ filehandles; in particular, IO::Scalar, IO::ScalarArray, and IO::Lines.") pseudo ttys.") (license (package-license perl)))) +(define-public perl-ipc-cmd + (package + (name "perl-ipc-cmd") + (version "0.96") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://cpan/authors/id/B/BI/BINGOS/IPC-Cmd-" + version ".tar.gz")) + (sha256 + (base32 + "0a2v44x70gj9fd5wa8i08f9z6n14qppj1j49m1hc333wh72mzk6i")))) + (build-system perl-build-system) + (home-page "http://search.cpan.org/dist/IPC-Cmd") + (synopsis "Run interactive command-line programs") + (description "@code{IPC::Cmd} allows for the searching and execution of +any binary on your system. It adheres to verbosity settings and is able to +run interactively. It also has an option to capture output/error buffers.") + (license (package-license perl)))) + (define-public perl-ipc-run (package (name "perl-ipc-run") @@ -3345,6 +3665,26 @@ version.") one: logging, exceptions, and translations.") (license (package-license perl)))) +(define-public perl-lingua-translit + (package + (name "perl-lingua-translit") + (version "0.26") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://cpan/authors/id/A/AL/ALINKE/" + "Lingua-Translit-" version ".tar.gz")) + (sha256 + (base32 + "161589h08kzliga17i2g0hb0yn4cjmb8rdiyadq5bw97974bac14")))) + (build-system perl-build-system) + (home-page "http://search.cpan.org/dist/Lingua-Translit") + (synopsis "Transliterate text between writing systems") + (description "@code{Lingua::Translit} can be used to convert text from one +writing system to another, based on national or international transliteration +tables. Where possible a reverse transliteration is supported.") + (license (package-license perl)))) + (define-public perl-list-allutils (package (name "perl-list-allutils") @@ -4372,6 +4712,26 @@ own set of Moose-like types. These custom types can then be used to describe fields in Moo-based classes.") (license (package-license perl)))) +(define-public perl-mozilla-ca + (package + (name "perl-mozilla-ca") + (version "20160104") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://cpan/authors/id/A/AB/ABH/Mozilla-CA-" + version ".tar.gz")) + (sha256 + (base32 + "0aizn08lrdrgjz9vagkjmw2c7sxn46fzz521v9dbcqii4jd0d9r7")))) + (build-system perl-build-system) + (home-page "http://search.cpan.org/dist/Mozilla-CA") + (synopsis "Mozilla's CA cert bundle in PEM format") + (description "@code{Mozilla::CA} provides a copy of Mozilla's bundle of +Certificate Authority certificates in a form that can be consumed by modules +and libraries based on OpenSSL.") + (license mpl2.0))) + (define-public perl-mro-compat (package (name "perl-mro-compat") @@ -5045,6 +5405,25 @@ designed to be slow or big, neither has it been designed to be fast or compact.") (license (package-license perl)))) +(define-public perl-sort-key + (package + (name "perl-sort-key") + (version "1.33") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://cpan/authors/id/S/SA/SALVA/Sort-Key-" + version ".tar.gz")) + (sha256 + (base32 + "1kqs10s2plj6c96srk0j8d7xj8dxk1704r7mck8rqk09mg7lqspd")))) + (build-system perl-build-system) + (home-page "http://search.cpan.org/dist/Sort-Key") + (synopsis "Sort arrays by one or multiple calculated keys") + (description "This Perl module provides various functions to quickly sort +arrays by one or multiple calculated keys.") + (license (package-license perl)))) + (define-public perl-spiffy (package (name "perl-spiffy") @@ -6389,6 +6768,29 @@ decomposition of comma-separated values. An instance of the Text::CSV class can combine fields into a CSV string and parse a CSV string into fields.") (license (package-license perl)))) +(define-public perl-text-csv-xs + (package + (name "perl-text-csv-xs") + (version "1.25") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://cpan/authors/id/H/HM/HMBRAND/" + "Text-CSV_XS-" version ".tgz")) + (sha256 + (base32 + "06zlfbqrwbl0g2g3bhk6046yy5pf2rz80fzcp8aj47rnswz2yx5k")))) + (build-system perl-build-system) + (home-page "http://search.cpan.org/dist/Text-CSV_XS") + (synopsis "Rountines for manipulating CSV files") + (description "@code{Text::CSV_XS} provides facilities for the composition +and decomposition of comma-separated values. An instance of the +@code{Text::CSV_XS} class will combine fields into a CSV string and parse a +CSV string into fields. The module accepts either strings or files as input +and support the use of user-specified characters for delimiters, separators, +and escapes.") + (license (package-license perl)))) + (define-public perl-text-diff (package (name "perl-text-diff") @@ -6459,6 +6861,27 @@ template engine, for when you need speed rather than complex features, yet need more features than simple variable substitution.") (license (package-license perl)))) +(define-public perl-text-roman + (package + (name "perl-text-roman") + (version "3.5") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://cpan/authors/id/S/SY/SYP/Text-Roman-" + version ".tar.gz")) + (sha256 + (base32 + "0sh47svzz0wm993ywfgpn0fvhajl2sj5hcnf5zxjz02in6ihhjnb")))) + (build-system perl-build-system) + (home-page "http://search.cpan.org/dist/Text-Roman") + (synopsis "Convert between Roman and Arabic algorisms") + (description "This package provides functions to convert between Roman and +Arabic algorisms. It supports both conventional Roman algorisms (which range +from 1 to 3999) and Milhar Romans, a variation which uses a bar across the +algorism to indicate multiplication by 1000.") + (license (package-license perl)))) + (define-public perl-text-simpletable (package (name "perl-text-simpletable") @@ -6567,6 +6990,25 @@ controlled with command line parameters. The default parameter settings approximately follow the suggestions in the Perl Style Guide.") (license gpl2+))) +(define-public perl-tie-cycle + (package + (name "perl-tie-cycle") + (version "1.221") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://cpan/authors/id/B/BD/BDFOY/Tie-Cycle-" + version ".tar.gz")) + (sha256 + (base32 + "10g6kirf6jfaldckg98y4pl87vrm7grqlg6ymb7a9vhrznyn7qn6")))) + (build-system perl-build-system) + (home-page "http://search.cpan.org/dist/Tie-Cycle") + (synopsis "Cycle through a list of values") + (description "You use @code{Tie::Cycle} to go through a list over and over +again. Once you get to the end of the list, you go back to the beginning.") + (license (package-license perl)))) + (define-public perl-tie-ixhash (package (name "perl-tie-ixhash") @@ -6810,17 +7252,58 @@ else.") common serialisation formats such as JSON or CBOR.") (license (package-license perl)))) +(define-public perl-unicode-normalize + (package + (name "perl-unicode-normalize") + (version "1.25") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://cpan/authors/id/K/KH/KHW/" + "Unicode-Normalize-" version ".tar.gz")) + (sha256 + (base32 + "0v04bcyjfcfap4kfpc8q3ikq3j7s68nym4ckw3iasmmksdskmcq0")))) + (build-system perl-build-system) + (home-page "http://search.cpan.org/dist/Unicode-Normalize") + (synopsis "Unicode normalization forms") + (description "This Perl module provides Unicode normalization forms.") + (license (package-license perl)))) + +(define-public perl-unicode-collate + (package + (name "perl-unicode-collate") + (version "1.18") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://cpan/authors/id/S/SA/SADAHIRO/" + "Unicode-Collate-" version ".tar.gz")) + (sha256 + (base32 + "1lq4p3mqqljhhy8wyiyahris33j4m5qfzpi6iacmcqjzw5g4afbm")))) + (build-system perl-build-system) + (propagated-inputs + `(("perl-unicode-normalize" ,perl-unicode-normalize))) + (home-page "http://search.cpan.org/dist/Unicode-Collate") + (synopsis "Unicode collation algorithm") + (description "This package provides tools for sorting and comparing +Unicode data.") + ;; The file Unicode/Collate/allkeys.txt is released under the Expat + ;; license. + (license (list (package-license perl) expat)))) + (define-public perl-unicode-linebreak (package (name "perl-unicode-linebreak") - (version "2015.12") + (version "2016.003") (source (origin (method url-fetch) (uri (string-append "mirror://cpan/authors/id/N/NE/NEZUMI/" "Unicode-LineBreak-" version ".tar.gz")) (sha256 (base32 - "1d0nnc97irfpab4d3b2lvq22hac118k7zbfrj0lnxkbfwx7122cm")))) + "096wf5x99swx7l7yd8pm2aw50g596nf50rkq7250zjcc1acjskp6")))) (build-system perl-build-system) (propagated-inputs `(("perl-mime-charset" ,perl-mime-charset))) @@ -7268,27 +7751,3 @@ interface to File::Find::Object.") (description "Test::TrailingSpace tests for trailing spaces in Perl source files.") (license x11))) - -(define-public perl-encode-detect - (package - (name "perl-encode-detect") - (version "1.01") - (source - (origin - (method url-fetch) - (uri (string-append - "mirror://cpan/authors/id/J/JG/JGMYERS/Encode-Detect-" - version - ".tar.gz")) - (sha256 - (base32 - "1wdv9ffgs4xyfh5dnh09dqkmmlbf5m1hxgdgb3qy6v6vlwx8jkc3")))) - (build-system perl-build-system) - (inputs - `(("perl-module-build" ,perl-module-build))) - (home-page - "http://search.cpan.org/dist/Encode-Detect") - (synopsis - "Perl Encode::Encoding subclass that detects the encoding of data") - (description "Encode::Detect detects the encoding of data for Perl.") - (license mpl1.1))) diff --git a/gnu/packages/photo.scm b/gnu/packages/photo.scm index f4d110edbc..8e823cfc21 100644 --- a/gnu/packages/photo.scm +++ b/gnu/packages/photo.scm @@ -89,20 +89,21 @@ data as produced by digital cameras.") (define-public libgphoto2 (package (name "libgphoto2") - (version "2.5.2") + (version "2.5.11") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/gphoto/libgphoto/" version "/libgphoto2-" version ".tar.bz2")) (sha256 (base32 - "0f1818l1vs5fbmrihzyv3qasddbqi3r01jik5crrxddwalsi2bd3")))) + "1ap070zz6l4kn2mbyxb1yj4x5ar8hpdbmf2pvjxgnly1ss319dkz")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config))) (inputs - `(;; ("libjpeg-turbo" ,libjpeg-turbo) + `(("libjpeg-turbo" ,libjpeg-turbo) ("libltdl" ,libltdl) - ("libusb" ,libusb))) + ("libusb" ,libusb) + ("libxml2" ,libxml2))) (propagated-inputs `(;; The .pc refers to libexif. ("libexif" ,libexif))) @@ -119,20 +120,20 @@ from digital cameras.") (define-public gphoto2 (package (name "gphoto2") - (version "2.5.2") + (version "2.5.11") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/gphoto/gphoto/" version "/gphoto2-" version ".tar.bz2")) (sha256 (base32 - "16c8k1cxfypg7v5h8xi87grclw7a5ayaamn548ys3zkj727r5fcf")))) + "1sgr6rsvzzagcwhc8fxbnvz3k02wr2hab0vrbvcb04k5l3b48a1r")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config))) (inputs `(("readline" ,readline) - ;; ("libjpeg-turbo" ,libjpeg-turbo) + ("libjpeg-turbo" ,libjpeg-turbo) ("popt" ,popt) ("libexif" ,libexif) ("libgphoto2" ,libgphoto2))) diff --git a/gnu/packages/protobuf.scm b/gnu/packages/protobuf.scm index 586e532746..12f6f70521 100644 --- a/gnu/packages/protobuf.scm +++ b/gnu/packages/protobuf.scm @@ -63,17 +63,14 @@ internal RPC protocols and file formats.") (base32 "1xbgbfg4g43bihkyw1a2giqa2gxmqc5wkh0fzqcb90qi1z1hpi7c")))) (build-system python-build-system) - (inputs + (propagated-inputs `(("python-six" ,python-six))) (home-page "https://github.com/google/protobuf") (synopsis "Protocol buffers is a data interchange format") (description "Protocol buffers are a language-neutral, platform-neutral extensible mechanism for serializing structured data.") - (license bsd-3) - (properties `((python2-variant . ,(delay python2-protobuf)))))) + (license bsd-3))) (define-public python2-protobuf - (package (inherit (package-with-python2 - (strip-python2-variant python-protobuf))) - (native-inputs `(("python2-setuptools" ,python2-setuptools))))) + (package-with-python2 python-protobuf)) diff --git a/gnu/packages/psyc.scm b/gnu/packages/psyc.scm deleted file mode 100644 index 03df188d1d..0000000000 --- a/gnu/packages/psyc.scm +++ /dev/null @@ -1,227 +0,0 @@ -;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2016 ng0 <ngillmann@runbox.com> -;;; -;;; This file is part of GNU Guix. -;;; -;;; GNU Guix is free software; you can redistribute it and/or modify it -;;; under the terms of the GNU General Public License as published by -;;; the Free Software Foundation; either version 3 of the License, or (at -;;; your option) any later version. -;;; -;;; GNU Guix is distributed in the hope that it will be useful, but -;;; WITHOUT ANY WARRANTY; without even the implied warranty of -;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -;;; GNU General Public License for more details. -;;; -;;; You should have received a copy of the GNU General Public License -;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. - -(define-module (gnu packages psyc) - #:use-module (guix download) - #:use-module (guix git-download) - #:use-module ((guix licenses) #:prefix license:) - #:use-module (guix packages) - #:use-module (guix build-system perl) - #:use-module (guix build-system gnu) - #:use-module (gnu packages) - #:use-module (gnu packages admin) - #:use-module (gnu packages autotools) - #:use-module (gnu packages bison) - #:use-module (gnu packages compression) - #:use-module (gnu packages gettext) - #:use-module (gnu packages linux) - #:use-module (gnu packages man) - #:use-module (gnu packages ncurses) - #:use-module (gnu packages perl) - #:use-module (gnu packages pcre) - #:use-module (gnu packages pkg-config) - #:use-module (gnu packages tls) - #:use-module (gnu packages web)) - -(define-public perl-net-psyc - (package - (name "perl-net-psyc") - (version "1.1") - (source - (origin - (method url-fetch) - (uri (string-append "http://perlpsyc.psyc.eu/" - "perlpsyc-" version ".zip")) - (file-name (string-append name "-" version ".zip")) - (sha256 - (base32 - "1lw6807qrbmvzbrjn1rna1dhir2k70xpcjvyjn45y35hav333a42")) - ;; psycmp3 currently depends on MP3::List and rxaudio (shareware), - ;; we can add it back when this is no longer the case. - (snippet '(delete-file "contrib/psycmp3")))) - (build-system perl-build-system) - (inputs - `(("perl-curses" ,perl-curses) - ("perl-io-socket-ssl" ,perl-io-socket-ssl))) - (arguments - `(#:phases - (modify-phases %standard-phases - (delete 'configure) ; No configure script - ;; There is a Makefile, but it does not install everything - ;; (leaves out psycion) and says - ;; "# Just to give you a rough idea". XXX: Fix it upstream. - (replace 'build - (lambda _ - (zero? (system* "make" "manuals")))) - (replace 'install - (lambda* (#:key outputs #:allow-other-keys) - (let* ((out (assoc-ref outputs "out")) - (doc (string-append out "/share/doc/perl-net-psyc")) - (man1 (string-append out "/share/man/man1")) - (man3 (string-append out "/share/man/man3")) - (bin (string-append out "/bin")) - (libpsyc (string-append out "/lib/psyc/ion")) - (libperl (string-append out "/lib/perl5/site_perl/" - ,(package-version perl)))) - - (copy-recursively "lib/perl5" libperl) - (copy-recursively "lib/psycion" libpsyc) - (copy-recursively "bin" bin) - (install-file "cgi/psycpager" (string-append doc "/cgi")) - (copy-recursively "contrib" (string-append doc "/contrib")) - (copy-recursively "hooks" (string-append doc "/hooks")) - (copy-recursively "sdj" (string-append doc "/sdj")) - (install-file "README.txt" doc) - (install-file "TODO.txt" doc) - (copy-recursively "share/man/man1" man1) - (copy-recursively "share/man/man3" man3) - #t))) - (add-after 'install 'wrap-programs - (lambda* (#:key outputs #:allow-other-keys) - ;; Make sure all executables in "bin" find the Perl modules - ;; provided by this package at runtime. - (let* ((out (assoc-ref outputs "out")) - (bin (string-append out "/bin/")) - (path (getenv "PERL5LIB"))) - (for-each (lambda (file) - (wrap-program file - `("PERL5LIB" ":" prefix (,path)))) - (find-files bin "\\.*$")) - #t)))))) - (description - "@code{Net::PSYC} with support for TCP, UDP, Event.pm, @code{IO::Select} and -Gtk2 event loops. This package includes 12 applications and additional scripts: -psycion (a @uref{http://about.psyc.eu,PSYC} chat client), remotor (a control console -for @uref{https://torproject.org,tor} router) and many more.") - (synopsis "Perl implementation of PSYC protocol") - (home-page "http://perlpsyc.psyc.eu/") - (license (list license:gpl2 - (package-license perl) - ;; contrib/irssi-psyc.pl: - license:public-domain - ;; bin/psycplay states AGPL with no version: - license:agpl3+)))) - -(define-public libpsyc - (package - (name "libpsyc") - (version "20160913") - (source (origin - (method url-fetch) - (uri (string-append "http://www.psyced.org/files/" - name "-" version ".tar.xz")) - (sha256 - (base32 - "14q89fxap05ajkfn20rnhc6b1h4i3i2adyr7y6hs5zqwb2lcmc1p")))) - (build-system gnu-build-system) - (native-inputs - `(("perl" ,perl) - ("netcat" ,netcat) - ("procps" ,procps))) - (arguments - `(#:make-flags - (list "CC=gcc" - (string-append "PREFIX=" (assoc-ref %outputs "out"))) - #:phases - (modify-phases %standard-phases - ;; The rust bindings are the only ones in use, the lpc bindings - ;; are in psyclpc. The other bindings are not used by anything, - ;; the chances are high that the bindings do not even work, - ;; therefore we do not include them. - ;; TODO: Get a cargo build system in Guix. - (delete 'configure)))) ; no configure script - (home-page "http://about.psyc.eu/libpsyc") - (description - "@code{libpsyc} is a PSYC library in C which implements -core aspects of PSYC, useful for all kinds of clients and servers -including psyced.") - (synopsis "PSYC library in C") - (license license:agpl3+))) - -;; This commit removes the historic bundled pcre, not released as a tarball so far. -(define-public psyclpc - (let* ((commit "8bd51f2a4847860ba8b82dc79348ab37d516011e") - (revision "1")) - (package - (name "psyclpc") - (version (string-append "20160821-" revision "." (string-take commit 7))) - (source (origin - (method git-fetch) - (uri (git-reference - (url "git://git.psyced.org/git/psyclpc") - (commit commit))) - (file-name (string-append name "-" version "-checkout")) - (sha256 - (base32 - "10w4kx9ygcv1lcmd7j4knvjiy8dac1y3hjfv3lhp67jpv6w3iagz")))) - (build-system gnu-build-system) - (arguments - `(#:tests? #f ; There are no tests/checks. - #:configure-flags - ;; If you have questions about this part, look at - ;; "src/settings/psyced" and the ebuild. - (list - "--enable-use-tls=yes" - "--enable-use-mccp" ; Mud Client Compression Protocol, leave this enabled. - (string-append "--prefix=" - (assoc-ref %outputs "out")) - ;; src/Makefile: Set MUD_LIB to the directory which contains - ;; the mud data. defaults to MUD_LIB = @libdir@ - (string-append "--libdir=" - (assoc-ref %outputs "out") - "/opt/psyced/world") - (string-append "--bindir=" - (assoc-ref %outputs "out") - "/opt/psyced/bin") - ;; src/Makefile: Set ERQ_DIR to directory which contains the - ;; stuff which ERQ can execute (hopefully) savely. Was formerly - ;; defined in config.h. defaults to ERQ_DIR= @libexecdir@ - (string-append "--libexecdir=" - (assoc-ref %outputs "out") - "/opt/psyced/run")) - #:phases - (modify-phases %standard-phases - (add-before 'configure 'chdir-to-src - ;; We need to pass this as env variables - ;; and manually change the directory. - (lambda _ - (chdir "src") - (setenv "CONFIG_SHELL" (which "sh")) - (setenv "SHELL" (which "sh")) - #t))) - #:make-flags (list "install-all"))) - (inputs - `(("zlib" ,zlib) - ("openssl" ,openssl) - ("pcre" ,pcre))) - (native-inputs - `(("pkg-config" ,pkg-config) - ("bison" ,bison) - ("gettext" ,gettext-minimal) - ("help2man" ,help2man) - ("autoconf" ,autoconf) - ("automake" ,automake))) - (home-page "http://lpc.psyc.eu/") - (synopsis "psycLPC is a multi-user network server programming language") - (description - "LPC is a bytecode language, invented to specifically implement -multi user virtual environments on the internet. This technology is used for -MUDs and also the psyced implementation of the Protocol for SYnchronous -Conferencing (PSYC). psycLPC is a fork of LDMud with some new features and -many bug fixes.") - (license license:gpl2)))) diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 5e8956f946..ea94f44230 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -31,6 +31,7 @@ ;;; Copyright © 2016 Dylan Jeffers <sapientech@sapientech@openmailbox.org> ;;; Copyright © 2016 Alex Vong <alexvong1995@gmail.com> ;;; Copyright © 2016 Arun Isaac <arunisaac@systemreboot.net> +;;; Copyright © 2016 Julien Lepiller <julien@lepiller.eu> ;;; ;;; This file is part of GNU Guix. ;;; @@ -122,6 +123,7 @@ "0y7rl603vmwlxm6ilkhc51rx2mfj14ckcz40xxgs0ljnvlhp30yp")) (patches (search-patches "python-2.7-search-paths.patch" "python-2-deterministic-build-info.patch" + "python-2.7-site-prefixes.patch" "python-2.7-source-date-epoch.patch")) (modules '((guix build utils))) ;; suboptimal to delete failing tests here, but if we delete them in the @@ -162,6 +164,7 @@ #:configure-flags (list "--enable-shared" ;allow embedding "--with-system-ffi" ;build ctypes + "--with-ensurepip=install" ;install pip and setuptools (string-append "LDFLAGS=-Wl,-rpath=" (assoc-ref %outputs "out") "/lib")) @@ -433,8 +436,6 @@ instead of @command{python3}."))) (base32 "1w4r09fvn6kd80m5mx4ws1wz100brkaq6hzzpwrns8cgjzjpl6c6")))) (build-system python-build-system) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (home-page "https://www.github.com/giampaolo/psutil") (synopsis "Library for retrieving information on running processes") (description @@ -463,9 +464,8 @@ pidof, tty, taskset, pmap.") "1vdbqsa1a31s98fxkinl052q8nnpvbxnb83qanxfpi2p6c2zdr0b")))) (build-system python-build-system) (native-inputs - `(("python-nose" ,python-nose) - ("python-setuptools" ,python-setuptools))) - (inputs + `(("python-nose" ,python-nose))) + (propagated-inputs `(("python-py-bcrypt" ,python-py-bcrypt))) (arguments `(#:phases @@ -503,8 +503,6 @@ to providing full-strength password hashing for multi-user application.") (base32 "0y6smdggwi5s72v6p1nn53dg6w05hna3d264cq6kas0lap73p8az")))) (build-system python-build-system) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (home-page "https://code.google.com/p/py-bcrypt") (synopsis "Bcrypt password hashing and key derivation") @@ -538,12 +536,9 @@ John the Ripper).") (base32 "14k8z7ndc3zk5xivnm4d8lncchx475ll5izpf8vmfbq7rp9yp5rj")))) (build-system python-build-system) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (propagated-inputs - `(("python-pycrypto" ,python-pycrypto))) - (inputs - `(("python-ecdsa" ,python-ecdsa))) + `(("python-pycrypto" ,python-pycrypto) + ("python-ecdsa" ,python-ecdsa))) (home-page "http://www.paramiko.org/") (synopsis "SSHv2 protocol library") (description "Paramiko is a python implementation of the SSHv2 protocol, @@ -568,8 +563,6 @@ Python interface around SSH networking concepts.") (base32 "126rsryvw9vhbf3qmsfw9lf4l4xm2srmgs439lgma4cpag4s3ay3")))) (build-system python-build-system) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (home-page "https://github.com/jcgregorio/httplib2") (synopsis "Comprehensive HTTP client library") (description @@ -595,8 +588,6 @@ other HTTP libraries.") (base32 "1yj31j0asmrx4an9xvsaj2icdmzy6pw0glfpqrrkrphwdpi1xkv4")))) (build-system python-build-system) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (inputs `(("openssl" ,openssl))) (home-page @@ -626,15 +617,18 @@ making them easy to handle and incorporate into other protocols.") (base32 "177dfxsmk3k4cih6fh6v8d91bh4nqx7ns6pc07w7m7i3cvdx3c8n")))) (build-system python-build-system) - (native-inputs - `(("python-setuptools" ,python-setuptools))) - (inputs + (propagated-inputs `(("python-pyyaml" ,python-pyyaml) + ;; Not listed in setup.py, but used in ccmlib/node.py for full + ;; functionality + ("python-psutil" ,python-psutil) ("python-six" ,python-six))) (home-page "https://github.com/pcmanus/ccm") - (synopsis "Cassandra Cluster Manager") - (description "A script/library to create, launch and remove an Apache -Cassandra cluster on localhost.") + (synopsis "Cassandra Cluster Manager for Apache Cassandra clusters on +localhost") + (description "Cassandra Cluster Manager is a development tool for testing +local Cassandra clusters. It creates, launches and removes Cassandra clusters +on localhost.") (license license:asl2.0))) (define-public python2-ccm @@ -676,9 +670,8 @@ using Python 2.4 or higher and provides access to the Olson timezone database.") (base32 "0k43pi0p1dwpds2w0km3fw92wixzxv2vw7p09capxmjz5cfh23lw")))) (build-system python-build-system) - (inputs - `(("python-pytz" ,python-pytz) - ("python-setuptools" ,python-setuptools))) + (propagated-inputs + `(("python-pytz" ,python-pytz))) (arguments `(#:tests? #f)) ; no test target (home-page "http://babel.pocoo.org/") (synopsis @@ -712,8 +705,6 @@ etc. ") (arguments `(#:python ,python-2 #:tests? #f)) ; no test target - (inputs - `(("python2-setuptools" ,python2-setuptools))) (home-page "https://bitbucket.org/brandon/backports.ssl_match_hostname") (synopsis "Backport of ssl.match_hostname() function from Python 3.5") (description @@ -752,10 +743,10 @@ and verifies that it matches the intended target hostname.") (string-append "['" prefix "/lib" "']"))) #t)))))) (propagated-inputs - `(("python-numpy" ,python-numpy))) + `(("python-six" ,python-six) + ("python-numpy" ,python-numpy))) (inputs - `(("hdf5" ,hdf5) - ("python-six" ,python-six))) + `(("hdf5" ,hdf5))) (native-inputs `(("python-cython" ,python-cython) ("python-pkgconfig" ,python-pkgconfig))) @@ -767,11 +758,10 @@ HDF5 library from Python. The low-level interface is intended to be a complete wrapping of the HDF5 API, while the high-level component supports access to HDF5 files, datasets and groups using established Python and NumPy concepts.") - (license license:bsd-3) - (properties `((python2-variant . ,(delay python2-h5py)))))) + (license license:bsd-3))) (define-public python2-h5py - (package-with-python2 (strip-python2-variant python-h5py))) + (package-with-python2 python-h5py)) (define-public python-lockfile (package @@ -794,15 +784,10 @@ concepts.") (description "The lockfile package exports a LockFile class which provides a simple API for locking files.") - (license license:expat) - (properties `((python2-variant . ,(delay python2-lockfile)))))) + (license license:expat))) (define-public python2-lockfile - (let ((base (package-with-python2 (strip-python2-variant python-lockfile)))) - (package - (inherit base) - (native-inputs `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-lockfile)) (define-public python-mock (package @@ -841,7 +826,15 @@ have been used.") version ".tar.gz")) (sha256 (base32 - "0kc7rbav00ks6iaw14p38y81q12fx0lpkhgf5m97xc04f5r318ig")))) + "0kc7rbav00ks6iaw14p38y81q12fx0lpkhgf5m97xc04f5r318ig")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Remove included binaries which are used to build self-extracting + ;; installers for Windows. + ;; TODO: Find some way to build them ourself so we can include them. + (for-each delete-file (find-files "setuptools" "^(cli|gui).*\\.exe$")) + #t)))) (build-system python-build-system) ;; FIXME: Tests require pytest, which itself relies on setuptools. ;; One could bootstrap with an internal untested setuptools. @@ -878,8 +871,6 @@ Python 3 support.") (base32 "0g0ayql5b9mkjam8hym6zyg6bv77lbh66rv1fyvgqb17kfc1xkpj")))) (build-system python-build-system) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (inputs `(("python" ,python) ("gmp" ,gmp))) @@ -922,7 +913,7 @@ etc.). The package is structured to make adding new modules easy.") (build-system python-build-system) (native-inputs `(("python-setuptools-scm" ,python-setuptools-scm))) - (inputs + (propagated-inputs `(("python-pycrypto" ,python-pycrypto))) (arguments `(#:tests? #f)) ;TODO: tests require pytest @@ -933,15 +924,10 @@ etc.). The package is structured to make adding new modules easy.") service from python. It can be used in any application that needs safe password storage.") ;; "MIT" and PSF dual license - (license license:x11) - (properties `((python2-variant . ,(delay python2-keyring)))))) + (license license:x11))) (define-public python2-keyring - (let ((base (package-with-python2 (strip-python2-variant python-keyring)))) - (package - (inherit base) - (native-inputs `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-keyring)) (define-public python-six (package @@ -955,8 +941,6 @@ password storage.") (base32 "0snmb8xffb3vsma0z67i0h0w2g2dy0p3gsgh9gi4i0kgc5l8spqh")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (home-page "http://pypi.python.org/pypi/six/") (synopsis "Python 2 and 3 compatibility utilities") (description @@ -982,22 +966,17 @@ Python file, so it can be easily copied into your project.") (base32 "0jrfpcgvgya6hs45dhrd9yiqgdgz9qp9aa07zsw8gqgn8zphff86")))) (build-system python-build-system) - (inputs + (propagated-inputs `(("python-six" ,python-six))) (home-page "https://dateutil.readthedocs.io/en/stable/") (synopsis "Extensions to the standard datetime module") (description "The dateutil module provides powerful extensions to the standard datetime module, available in Python 2.3+.") - (license license:bsd-3) - (properties `((python2-variant . ,(delay python2-dateutil-2)))))) + (license license:bsd-3))) (define-public python2-dateutil-2 - (let ((base (package-with-python2 (strip-python2-variant python-dateutil-2)))) - (package - (inherit base) - (inputs `(("python2-setuptools" ,python2-setuptools) - ,@(package-inputs base)))))) + (package-with-python2 python-dateutil-2)) (define-public python-dateutil (package @@ -1012,8 +991,6 @@ datetime module, available in Python 2.3+.") (base32 "0fqfglhy5khbvsipr3x7m6bcaqljh8xl5cw33vbfxy7qhmywm2n0")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (home-page "https://dateutil.readthedocs.io/en/stable/") (synopsis "Extensions to the standard datetime module") (description @@ -1044,15 +1021,10 @@ datetime module, available in Python 2.3+.") "Parse human-readable date/time text") (description "Parse human-readable date/time text.") - (license license:asl2.0) - (properties `((python2-variant . ,(delay python2-parsedatetime)))))) + (license license:asl2.0))) (define-public python2-parsedatetime - (let ((base (package-with-python2 (strip-python2-variant python-parsedatetime)))) - (package - (inherit base) - (native-inputs `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-parsedatetime)) (define-public python-pandas (package @@ -1069,12 +1041,12 @@ datetime module, available in Python 2.3+.") (base32 "1ckpxrvvjj6zxmn68icd9hib8qcpx9b35f6izxnr25br5ilq7r6j")))) (build-system python-build-system) (propagated-inputs - `(("python-numpy" ,python-numpy))) - (inputs - `(("python-pytz" ,python-pytz) + `(("python-numpy" ,python-numpy) + ("python-pytz" ,python-pytz) ("python-dateutil" ,python-dateutil-2))) (native-inputs - `(("python-nose" ,python-nose))) + `(("python-nose" ,python-nose) + ("python-cython" ,python-cython))) (home-page "http://pandas.pydata.org") (synopsis "Data structures for data analysis, time series, and statistics") (description @@ -1083,15 +1055,10 @@ structures designed to make working with structured (tabular, multidimensional, potentially heterogeneous) and time series data both easy and intuitive. It aims to be the fundamental high-level building block for doing practical, real world data analysis in Python.") - (license license:bsd-3) - (properties `((python2-variant . ,(delay python2-pandas)))))) + (license license:bsd-3))) (define-public python2-pandas - (let ((base (package-with-python2 (strip-python2-variant python-pandas)))) - (package - (inherit base) - (native-inputs `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-pandas)) (define-public python-tzlocal (package @@ -1105,7 +1072,8 @@ doing practical, real world data analysis in Python.") (base32 "0paj7vlsb0np8b5sp4bv64wxv7qk2piyp7xg29pkhdjwsbls9fnb")))) (build-system python-build-system) - (inputs `(("python-pytz" ,python-pytz))) + (propagated-inputs + `(("python-pytz" ,python-pytz))) (home-page "https://github.com/regebro/tzlocal") (synopsis "Local timezone information for Python") @@ -1154,8 +1122,6 @@ Database API 2.0T.") (base32 "0rj7r166i1dyrq0ihm5rijfmvhs8a04im28lv05c0c3v206v4rrf")))) (build-system python-build-system) - (inputs - `(("python2-setuptools" ,python2-setuptools))) (arguments `(#:python ,python-2 ; apparently incompatible with Python 3 #:tests? #f)) @@ -1180,14 +1146,14 @@ after Andy Lester’s Perl module WWW::Mechanize.") (define-public python-simplejson (package (name "python-simplejson") - (version "3.8.2") + (version "3.10.0") (source (origin (method url-fetch) (uri (pypi-uri "simplejson" version)) (sha256 (base32 - "0zylrnax8b6r0ndgni4w9c599fi6wm9vx5g6k3ddqfj3932kk16m")))) + "1qhwsykjlb85igb4cfl6v6gkprzbbg8gyqdd7zscc8w3x0ifcfwm")))) (build-system python-build-system) (home-page "http://simplejson.readthedocs.org/en/latest/") (synopsis @@ -1228,14 +1194,10 @@ Python 3.3+.") (synopsis "Python extension wrapping the ICU C++ API") (description "PyICU is a python extension wrapping the ICU C++ API.") - (license license:x11) - (properties `((python2-variant . ,(delay python2-pyicu)))))) + (license license:x11))) (define-public python2-pyicu - (package - (inherit (package-with-python2 - (strip-python2-variant python-pyicu))) - (native-inputs `(("python2-setuptools" ,python2-setuptools))))) + (package-with-python2 python-pyicu)) (define-public python2-dogtail ;; Python 2 only, as it leads to "TabError: inconsistent use of tabs and @@ -1340,7 +1302,8 @@ commands.") (arguments `(#:python ,python-2 ; SyntaxError with Python 3 #:tests? #f)) ; no 'test' sub-command - (inputs `(("element-tree" ,python2-element-tree))) + (propagated-inputs + `(("element-tree" ,python2-element-tree))) (synopsis "Python and command-line interface to Bugzilla") (description "PyBugz is a Python library and command-line tool to query the Bugzilla @@ -1390,9 +1353,8 @@ backported for previous versions of Python from 2.4 to 3.3.") (base32 "0iv1c34npr4iynwpgv1vkjx9rjd18a85ir8c01gc5f7wp8iv7l1x")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools) - ("python-six" ,python-six) + (propagated-inputs + `(("python-six" ,python-six) ("python-parse" ,python-parse))) (arguments '(#:tests? #f)) ;TODO: tests require pytest (home-page "https://github.com/jenisys/parse_type") @@ -1426,6 +1388,31 @@ backported for previous versions of Python from 2.4 to 3.3.") syntax.") (license license:x11))) +(define-public python-polib + (package + (name "python-polib") + (version "1.0.8") + (source (origin + (method url-fetch) + (uri (pypi-uri "polib" version)) + (sha256 + (base32 + "1pq2hbm3m2q0cjdszk8mc4qa1vl3wcblh5nfyirlfnzb2pcy7zss")))) + (build-system python-build-system) + (home-page "https://bitbucket.org/izi/polib/wiki/Home") + (synopsis "Manipulate, create and modify gettext files") + (description "Polib can manipulate any gettext format (po, pot and mo) +files. It can be used to create po files from scratch or to modify +existing ones.") + (license license:expat))) + +(define-public python2-polib + (let ((base (package-with-python2 (strip-python2-variant python-polib)))) + (package + (inherit base) + (arguments `(,@(package-arguments base) + ;; Tests don't work with python2. + #:tests? #f))))) (define-public scons (package @@ -1442,6 +1429,7 @@ syntax.") (arguments ;; With Python 3.x, fails to build with a syntax error. `(#:python ,python-2 + #:use-setuptools? #f ; still relies on distutils #:tests? #f)) ; no 'python setup.py test' command (home-page "http://scons.org/") (synopsis "Software construction tool written in Python") @@ -1467,8 +1455,6 @@ software.") (base32 "1h7zx4dfyclalg0fqnfjijpn0f793a9mx8sy3b27gd31nr6dhq3s")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (arguments ;; error in setup.cfg: command 'test' has no such option 'buffer' '(#:tests? #f)) @@ -1495,8 +1481,6 @@ software.") (base32 "1hyxg09kaj02ri0rmwjqi86wk4nd1akvv7n0dx77azz76wga4s9w")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (arguments '(#:tests? #f)) ; no setup.py test command (home-page @@ -1522,8 +1506,6 @@ matching them against a list of media-ranges.") (base32 "164a43k7k2wsqqk1s6vavcdamvss4mz0vd6pwzv2h9n8rgwzxgzi")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (arguments '(#:tests? #f)) ; FIXME: test suite fails (home-page "http://readthedocs.org/docs/nose/") @@ -1548,9 +1530,7 @@ matching them against a list of media-ranges.") "1x4zjq1zlyrh8b9ba0cmafd3w94pxhid408kibyjd3s6h1lap6s7")))) (build-system python-build-system) (arguments `(#:tests? #f)) ; 'module' object has no attribute 'collector' - (native-inputs - `(("python-setuptools" ,python-setuptools))) - (inputs + (propagated-inputs `(("python-cov-core" ,python-cov-core) ("python-pytest-cov" ,python-pytest-cov) ("python-six" ,python-six))) @@ -1580,8 +1560,6 @@ interfaces and processes.") (base32 "00yl6lskygcrddx5zspkhr0ibgvpknl4678kkm6s626539grq93q")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (home-page "http://pypi.python.org/pypi/unittest2") (synopsis "Python unit testing library") (description @@ -1602,8 +1580,6 @@ standard library.") (sha256 (base32 "0wbs4i4x3x7klr3v35ss6p9mcqz883i1xgcpkhvl7n2lyv6yhpda")))) - (inputs - `(("python2-setuptools" ,python2-setuptools))) (arguments `(#:python ,python-2 #:tests? #f)))) ; no setup.py test command @@ -1644,8 +1620,6 @@ standard library.") (base32 "0561gz2w3i825gyl42mcq14y3dcgkapfiv5zv9a2bz15qxiijl56")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (home-page "http://pylib.readthedocs.org/") (synopsis "Python library for parsing, I/O, instrospection, and logging") (description @@ -1676,10 +1650,10 @@ code introspection, and logging.") (("def test_remove_dir_prefix\\(self\\):") "@pytest.mark.xfail\n def test_remove_dir_prefix(self):"))))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools) - ("python-py" ,python-py) - ("python-nose" ,python-nose) + (propagated-inputs + `(("python-py" ,python-py))) + (native-inputs + `(("python-nose" ,python-nose) ("python-mock" ,python-mock))) (home-page "http://pytest.org") (synopsis "Python testing library") @@ -1729,7 +1703,17 @@ and many external plugins.") (base32 "1yl4nbhzfgsxqlsyk4clafgp9x11zvgrkprm9i2p3fgkwx9jxcm8")))) (build-system python-build-system) - (inputs + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + ;; options taken from tox.ini + ;; TODO: make "--restructuredtext" tests pass. They currently fail + ;; with "Duplicate implicit target name" + (zero? (system* "python" "./setup.py" "check" + "--strict" "--metadata"))))))) + (propagated-inputs `(("python-coverage" ,python-coverage) ("python-pytest" ,python-pytest))) (home-page "https://github.com/pytest-dev/pytest-cov") @@ -1738,15 +1722,10 @@ and many external plugins.") "Pytest-cov produces coverage reports. It supports centralised testing and distributed testing in both @code{load} and @code{each} modes. It also supports coverage of subprocesses.") - (license license:expat) - (properties `((python2-variant . ,(delay python2-pytest-cov)))))) + (license license:expat))) (define-public python2-pytest-cov - (let ((base (package-with-python2 (strip-python2-variant python-pytest-cov)))) - (package - (inherit base) - (inputs `(("python2-setuptools" ,python2-setuptools) - ,@(package-inputs base)))))) + (package-with-python2 python-pytest-cov)) (define-public python-pytest-runner (package @@ -1779,16 +1758,10 @@ supports coverage of subprocesses.") (description "This package provides a @command{pytest-runner} command that @file{setup.py} files can use to run tests.") - (license license:expat) - (properties `((python2-variant . ,(delay python2-pytest-runner)))))) + (license license:expat))) (define-public python2-pytest-runner - (let ((base (package-with-python2 - (strip-python2-variant python-pytest-runner)))) - (package - (inherit base) - (native-inputs `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-pytest-runner)) (define-public python-pytest-mock (package @@ -1804,9 +1777,8 @@ supports coverage of subprocesses.") (build-system python-build-system) (native-inputs `(("unzip" ,unzip))) - (inputs - `(("python-py" ,python-py) - ("python-pytest" ,python-pytest))) + (propagated-inputs + `(("python-pytest" ,python-pytest))) (home-page "https://github.com/pytest-dev/pytest-mock/") (synopsis "Thin-wrapper around the mock package for easier use with py.test") (description @@ -1822,12 +1794,9 @@ same arguments.") (let ((base (package-with-python2 (strip-python2-variant python-pytest-mock)))) (package (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base))) - (inputs + (propagated-inputs `(("python2-mock" ,python2-mock) - ,@(package-inputs base)))))) + ,@(package-propagated-inputs base)))))) (define-public python-pytest-xdist (package @@ -1852,9 +1821,8 @@ same arguments.") (native-inputs `(("unzip" ,unzip) ("python-setuptools-scm" ,python-setuptools-scm))) - (inputs - `(("python-apipkg" ,python-apipkg) - ("python-execnet" ,python-execnet) + (propagated-inputs + `(("python-execnet" ,python-execnet) ("python-pytest" ,python-pytest) ("python-py" ,python-py))) (home-page @@ -1868,16 +1836,10 @@ to run tests repeatedly when failed, and the ability to run tests on multiple Python interpreters or platforms. It uses rsync to copy the existing program code to a remote location, executes there, and then syncs the result back.") - (license license:expat) - (properties `((python2-variant . ,(delay python2-pytest-xdist)))))) + (license license:expat))) (define-public python2-pytest-xdist - (let ((base (package-with-python2 - (strip-python2-variant python-pytest-xdist)))) - (package - (inherit base) - (native-inputs `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-pytest-xdist)) (define-public python-scripttest (package @@ -1893,9 +1855,8 @@ result back.") (base32 "0f4w84k8ck82syys7yg9maz93mqzc8p5ymis941x034v44jzq74m")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools) - ("python-pytest" ,python-pytest))) + (native-inputs + `(("python-pytest" ,python-pytest))) (home-page "http://pythonpaste.org/scripttest/") (synopsis "Python library to test command-line scripts") (description "Scripttest is a Python helper library for testing @@ -1921,9 +1882,7 @@ subprocess and see the output as well as any file modifications.") "1dyml28ykpl5jb9khdmcdvhy1cxqingys6qvj2k04fzlaj6z3bbx")))) (build-system python-build-system) (propagated-inputs - `(("python-mimeparse" ,python-mimeparse))) - (inputs - `(("python-setuptools" ,python-setuptools) + `(("python-mimeparse" ,python-mimeparse) ("python-extras" ,python-extras))) (home-page "https://github.com/testing-cabal/testtools") (synopsis @@ -1951,10 +1910,8 @@ compatibility.") (base32 "1671jvrvqlmbnc42j7pc5y6vc37q44aiwrq0zic652pxyy2fxvjg")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools) - ("python-testtools" ,python-testtools) - ("python-mimeparse" ,python-mimeparse))) + (propagated-inputs + `(("python-testtools" ,python-testtools))) (home-page "https://launchpad.net/testscenarios") (synopsis "Pyunit extension for dependency injection") (description @@ -1979,8 +1936,6 @@ style tests.") (base32 "0cbj3plbllyz42c4b5xxgwaa7mml54lakslrn4kkhinxhdri22md")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (home-page "https://launchpad.net/testresources") (synopsis "Pyunit extension for managing test resources") @@ -2006,11 +1961,11 @@ use of resources by test cases.") (base32 "1nkw9wfbvizmpajbj3in8ns07g7lwkiv8hip14jjlwk3cacls6jv")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools) - ("python-testtools" ,python-testtools) - ("python-mimeparse" ,python-mimeparse) - ("python-testscenarios" ,python-testscenarios))) + (propagated-inputs + `(("python-extras" ,python-extras) + ("python-mimeparse" ,python-mimeparse))) + (native-inputs + `(("python-testscenarios" ,python-testscenarios))) (home-page "http://launchpad.net/subunit") (synopsis "Python implementation of the subunit protocol") (description @@ -2021,96 +1976,51 @@ protocol.") (define-public python2-subunit (package-with-python2 python-subunit)) -;; Recent versions of python-fixtures need a recent version of python-pbr, -;; which needs a recent version of python-fixtures. To fix this circular -;; dependency, we keep old versions of python-fixtures and python-pbr to -;; bootstrap the whole thing: -;; - python-fixtures-0.3.16 is used to build python-pbr-0.11 -;; - python-pbr-0.11 is used to build python-fixtures -;; - python-fixtures is used to build python-pbr -(define-public python-fixtures-0.3.16 - (package - (name "python-fixtures") - (version "0.3.16") - (source - (origin - (method url-fetch) - (uri (string-append - "https://pypi.python.org/packages/source/f/fixtures/fixtures-" - version ".tar.gz")) - (sha256 - (base32 - "0x9r2gwilcig5g54k60bxzg96zabizq1855lrprlb4zckalp9asc")))) - (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) - (arguments - '(#:tests? #f)) ; no setup.py test command - (home-page "https://launchpad.net/python-fixtures") - (synopsis "Python test fixture library") - (description - "Fixtures provides a way to create reusable state, useful when writing -Python tests.") - (license (list license:bsd-3 license:asl2.0)))) ; at user's option - -(define-public python2-fixtures-0.3.16 - (package-with-python2 python-fixtures-0.3.16)) - -(define-public python-pbr-0.11 - (package - (name "python-pbr") - (version "0.11.0") +;; Recent versions of python-fixtures and python-testrepository need +;; python-pbr for packaging, which itself needs these two packages for +;; testing. +;; To fix this circular dependency, we use a build of python-pbr, based on the +;; same source, just without any test dependencies and with tests disabled. +;; python-pbr-minmal is then used to package python-fixtures and +;; python-testrepository. +;; Strictly speaking we currently could remove the test-requirements from the +;; normal python-pbr package (and save this package) since test are disabled +;; there anyway. But this may change in future. +(define python-pbr-minimal + (package + (name "python-pbr-minimal") + (version "1.8.1") (source (origin (method url-fetch) - (uri (string-append - "https://pypi.python.org/packages/source/p/pbr/pbr-" - version ".tar.gz")) + (uri (pypi-uri "pbr" version)) (sha256 (base32 - "0v9gb7gyqf7q9s99l0nnjj9ww9b0jvyqlwm4d56pcyinxydddw6p")))) + "0jcny36cf3s8ar5r4a575npz080hndnrfs4np1fqhv0ym4k7c4p2")))) (build-system python-build-system) (arguments - `(#:tests? #f)) ;; Most tests seem to use the Internet. - (inputs - `(("python-fixtures-0.3.16" ,python-fixtures-0.3.16) - ("python-pip" ,python-pip) - ("python-setuptools" ,python-setuptools))) - (home-page "https://launchpad.net/pbr") - (synopsis "Change the default behavior of Python’s setuptools") + `(#:tests? #f)) + (home-page "http://docs.openstack.org/developer/pbr/") + (synopsis "Minimal build of python-pbr used for bootstrapping") (description - "Python Build Reasonableness (PBR) is a library that injects some useful -and sensible default behaviors into your setuptools run.") + "Used only for bootstrapping python2-pbr, you should not need this.") (license license:asl2.0))) -(define-public python2-pbr-0.11 - (package-with-python2 python-pbr-0.11)) +(define python2-pbr-minimal + (package-with-python2 python-pbr-minimal)) (define-public python-pbr (package + (inherit python-pbr-minimal) (name "python-pbr") - (version "1.8.1") - (source - (origin - (method url-fetch) - (uri (string-append - "https://pypi.python.org/packages/source/p/pbr/pbr-" - version - ".tar.gz")) - (sha256 - (base32 - "0jcny36cf3s8ar5r4a575npz080hndnrfs4np1fqhv0ym4k7c4p2")))) - (build-system python-build-system) (arguments `(#:tests? #f)) ;; Most tests seem to use the Internet. (propagated-inputs - `(("python-testrepository" ,python-testrepository) - ("git" ,git))) ;; pbr actually uses the "git" binary. - (inputs + `(("git" ,git))) ;; pbr actually uses the "git" binary. + (native-inputs `(("python-fixtures" ,python-fixtures) - ("python-mimeparse" ,python-mimeparse) + ;; discover, coverage, hacking, subunit ("python-mock" ,python-mock) - ("python-setuptools" ,python-setuptools) ("python-six" ,python-six) ("python-sphinx" ,python-sphinx) ("python-testrepository" ,python-testrepository) @@ -2118,12 +2028,13 @@ and sensible default behaviors into your setuptools run.") ("python-testscenarios" ,python-testscenarios) ("python-testtools" ,python-testtools) ("python-virtualenv" ,python-virtualenv))) - (home-page "https://launchpad.net/pbr") - (synopsis "Change the default behavior of Python’s setuptools") + (synopsis "Enhance the default behavior of Python’s setuptools") (description "Python Build Reasonableness (PBR) is a library that injects some useful -and sensible default behaviors into your setuptools run.") - (license license:asl2.0))) +and sensible default behaviors into your setuptools run. It will set +versions, process requirements files and generate AUTHORS and ChangeLog file +from git information. +"))) (define-public python2-pbr (package-with-python2 python-pbr)) @@ -2141,15 +2052,10 @@ and sensible default behaviors into your setuptools run.") "0djxvdwm8s60dbfn7bhf40x6g818p3b3mlwijm1c3bqg7msn271y")))) (build-system python-build-system) (propagated-inputs - `(("python-six" ,python-six) - ("python-pbr-0.11" ,python-pbr-0.11))) - (inputs - `(("python-pip" ,python-pip) - ("python-setuptools" ,python-setuptools) - ;; Tests + `(("python-six" ,python-six))) + (native-inputs + `(("python-pbr-minimal" ,python-pbr-minimal) ("python-testtools" ,python-testtools))) - (arguments - '(#:tests? #f)) ; no setup.py test command (home-page "https://launchpad.net/python-fixtures") (synopsis "Python test fixture library") (description @@ -2175,11 +2081,11 @@ Python tests.") "1ssqb07c277010i6gzzkbdd46gd9mrj0bi0i8vn560n2k2y4j93m")))) (build-system python-build-system) (propagated-inputs - `(("python-fixtures-0.3.16" ,python-fixtures-0.3.16) - ("python-testtools" ,python-testtools))) - (inputs - `(("python-setuptools" ,python-setuptools) + `(("python-fixtures" ,python-fixtures) ("python-subunit" ,python-subunit) + ("python-testtools" ,python-testtools))) + (native-inputs + `(("python-pbr-minimal" ,python-pbr-minimal) ;; same as for building fixture ("python-mimeparse" ,python-mimeparse))) (home-page "https://launchpad.net/testrepository") (synopsis "Database for Python test results") @@ -2203,8 +2109,6 @@ have failed since the last commit or what tests are currently failing.") (base32 "01rbr4br4lsk0lwn8fb96zwd2xr4f0mg1w7iq3j11i8f5ig2nqs1")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (home-page "http://nedbatchelder.com/code/coverage") (synopsis "Code coverage measurement for Python") (description @@ -2229,22 +2133,17 @@ executed.") (base32 "0k3np9ymh06yv1ib96sb6wfsxjkqhmik8qfsn119vnhga9ywc52a")))) (build-system python-build-system) - (native-inputs + (propagated-inputs `(("python-coverage" ,python-coverage))) (home-page "https://github.com/schlamar/cov-core") (synopsis "plugin core for use by pytest-cov, nose-cov and nose2-cov") (description "This is a library package for use by pytest-cov, nose-cov and nose2-cov. It is useful for developing coverage plugins for these testing frameworks.") - (license license:expat) - (properties `((python2-variant . ,(delay python2-cov-core)))))) + (license license:expat))) (define-public python2-cov-core - (let ((cov-core (package-with-python2 (strip-python2-variant python-cov-core)))) - (package (inherit cov-core) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs cov-core)))))) + (package-with-python2 python-cov-core)) (define-public python-discover (package @@ -2260,8 +2159,6 @@ It is useful for developing coverage plugins for these testing frameworks.") (base32 "0y8d0zwiqar51kxj8lzmkvwc3b8kazb04gk5zcb4nzg5k68zmhq5")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (home-page "http://pypi.python.org/pypi/discover/") (synopsis "Python test discovery for unittest") @@ -2284,9 +2181,8 @@ backported from Python 2.7 for Python 2.4+.") (base32 "1iypp6z46r19n4xmgx6m1lwmlpfjh8vapq8izigrqlaarvp2y64c")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools) - ("python-six" ,python-six) + (propagated-inputs + `(("python-six" ,python-six) ("python-parse" ,python-parse) ("python-parse-type" ,python-parse-type))) (arguments `(#:tests? #f)) ;TODO: tests require nose>=1.3 and @@ -2312,8 +2208,6 @@ tests written in a natural language style, backed up by Python code.") (base32 "1b90jf6m9vxh9nanhpyvqdq7hmfx5iggw1l8kq10jrs6xgr49qkr")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (arguments `(#:tests? #f)) ; no tests (home-page "https://github.com/ianare/exif-py") (synopsis "Python library to extract EXIF data from image files") @@ -2336,8 +2230,6 @@ files.") (base32 "1m0fs6897vxfkf7awah5i66i7b7smm5fnywf1w50fpzyfbfhr156")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (arguments `(#:tests? #f)) ; no tests (home-page "http://github.com/digitalbazaar/pyld") (synopsis "Python implementation of the JSON-LD specification") @@ -2359,8 +2251,6 @@ files.") (base32 "06c9dcyv8ss050gkv5xjivbxhm6qm0s9vzy4r33wqabgv118lw7p")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (arguments `(#:tests? #f)) ; no tests (home-page "http://python-requests.org/") (synopsis "Python CA certificate bundle") @@ -2395,8 +2285,6 @@ is used by the Requests library to verify HTTPS requests.") (("'locale'") (string-append "'" glibc "/bin/locale'")))) #t))))) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (home-page "http://click.pocoo.org") (synopsis "Command line library for Python") (description @@ -2422,8 +2310,7 @@ with sensible defaults out of the box.") "0j0n38hg1jvrmyy68f9ikvzq1gs9g0sx4ws7maf8wi3bwbbqmfqy")))) (build-system python-build-system) (native-inputs - `(("python-setuptools" ,python-setuptools) - ("python-jsonschema" ,python-jsonschema) + `(("python-jsonschema" ,python-jsonschema) ("python-pytest-cov" ,python-pytest-cov))) (home-page "https://bitbucket.org/pypa/wheel/") (synopsis "Format for built Python packages") @@ -2458,8 +2345,7 @@ installed with a newer @code{pip} or with wheel's own command line utility.") "0zsqrzlybf25xscgi7ja4s48y2abf9wvjkn47wh984qgs1fq2xy5")))) (build-system python-build-system) (native-inputs - `(("python-setuptools" ,python-setuptools) - ("python-py" ,python-py) + `(("python-py" ,python-py) ("python-pytest" ,python-pytest) ("python-pytest-cov" ,python-pytest-cov) ("python-wheel" ,python-wheel))) @@ -2502,15 +2388,10 @@ than Python’s urllib2 library.") information in a variety of version control systems in order to discover version numbers.") (home-page "https://github.com/habnabit/vcversioner") - (license license:isc) - (properties `((python2-variant . ,(delay python2-vcversioner)))))) + (license license:isc))) (define-public python2-vcversioner - (let ((vcversioner (package-with-python2 - (strip-python2-variant python-vcversioner)))) - (package (inherit vcversioner) - (native-inputs `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs vcversioner)))))) + (package-with-python2 python-vcversioner)) (define-public python-jsonschema (package @@ -2546,7 +2427,6 @@ version numbers.") (package (inherit jsonschema) (native-inputs `(("python2-mock" ,python2-mock) - ("python2-setuptools" ,python2-setuptools) ,@(package-native-inputs jsonschema))) (propagated-inputs `(("python2-functools32" ,python2-functools32)))))) @@ -2562,8 +2442,6 @@ version numbers.") (base32 "12hhblqy1ajvidm38im4171x4arg83pfmziyn53nizp29p3m14gi")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (home-page "https://pypi.python.org/pypi/Unidecode") (synopsis "ASCII transliterations of Unicode text") (description @@ -2590,10 +2468,9 @@ somewhat intelligeble.") "1556v2jppd8mjkkj66pxb5rcazm35jq81r233mdl8hfmz9n3icp1")))) (build-system python-build-system) (native-inputs - `(("python-setuptools" ,python-setuptools) + `(("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov) ("python-pytest-runner" ,python-pytest-runner))) - (arguments - '(#:tests? #f)) ; test suite doesn't work (home-page "http://github.com/progrium/pyjwt") (synopsis "JSON Web Token implementation in Python") (description @@ -2615,13 +2492,10 @@ somewhat intelligeble.") "1bfrj70vdjxjw74khbyh6f0dksv7p5rh2346jnlrffyacd3gwjzg")))) (build-system python-build-system) (native-inputs - `(("python-coverage" ,python-coverage) - ("python-nose" ,python-nose) - ("python-mock" ,python-mock))) - (inputs - `(("python-blinker" ,python-blinker) + `(("python-nose" ,python-nose) ("python-cryptography" ,python-cryptography) - ("python-pyjwt" ,python-pyjwt))) + ("python-pyjwt" ,python-pyjwt) + ("python-blinker" ,python-blinker))) (home-page "https://github.com/idan/oauthlib") (synopsis "OAuth implementation for Python") (description @@ -2634,8 +2508,8 @@ OAuth request-signing logic.") (let ((base (package-with-python2 (strip-python2-variant python-oauthlib)))) (package (inherit base) - (native-inputs `(("python2-setuptools" ,python2-setuptools) - ("python2-unittest2" ,python2-unittest2) + (native-inputs `(("python2-unittest2" ,python2-unittest2) + ("python2-mock" ,python2-mock) ,@(package-native-inputs base)))))) (define-public python-itsdangerous @@ -2657,16 +2531,10 @@ OAuth request-signing logic.") (description "Itsdangerous provides various helpers to pass trusted data to untrusted environments and back.") - (license license:bsd-3) - (properties `((python2-variant . ,(delay python2-itsdangerous)))))) + (license license:bsd-3))) (define-public python2-itsdangerous - (let ((base (package-with-python2 - (strip-python2-variant python-itsdangerous)))) - (package - (inherit base) - (native-inputs `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-itsdangerous)) (define-public python-pyyaml (package @@ -2684,8 +2552,6 @@ environments and back.") (build-system python-build-system) (inputs `(("libyaml" ,libyaml))) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (home-page "http://pyyaml.org/wiki/PyYAML") (synopsis "YAML parser and emitter for Python") (description @@ -2721,9 +2587,8 @@ object.") (substitute* "tests/test_virtualenv.py" (("skipif.*") "skipif(True, reason=\"Guix\")\n")) (zero? (system* "py.test"))))))) - (inputs - `(("python-setuptools" ,python-setuptools) - ("python-mock" ,python-mock) + (native-inputs + `(("python-mock" ,python-mock) ("python-pytest" ,python-pytest))) (home-page "https://virtualenv.pypa.io/") (synopsis "Virtual Python environment builder") @@ -2748,8 +2613,6 @@ object.") (base32 "1hvip33wva3fnmvfp9x5klqri7hpl1hkgqmjbss18nmrb7zimv54")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (home-page "http://github.com/mitsuhiko/markupsafe") (synopsis "XML/HTML/XHTML markup safe string implementation for Python") (description @@ -2772,9 +2635,8 @@ for Python.") (base32 "1x0v41lp5m1pjix3l46zx02b7lqp2hflgpnxwkywxynvi3zz47xw")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools) - ("python-markupsafe" ,python-markupsafe))) + (propagated-inputs + `(("python-markupsafe" ,python-markupsafe))) (home-page "http://jinja.pocoo.org/") (synopsis "Python template engine") (description @@ -2796,8 +2658,6 @@ written in pure Python.") (base32 "0nmqsfmiw4arjxqkmf9z66ml950pcdjk6aq4gin4sywmzdjw5fzp")))) (build-system python-build-system) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (home-page "http://defunkt.io/pystache/") (synopsis "Python logic-less template engine") (description @@ -2817,7 +2677,15 @@ logic-free templating system Mustache.") (uri (pypi-uri "joblib" version)) (sha256 (base32 - "0787k919zlfmgymprz5bzv0v1df5bbirlf3awrghmjgvkrd9dci9")))) + "0787k919zlfmgymprz5bzv0v1df5bbirlf3awrghmjgvkrd9dci9")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Remove pre-compiled .pyc files from source. + (for-each delete-file-recursively + (find-files "." "__pycache__" #:directories? #t)) + (for-each delete-file (find-files "." "\\.pyc$")) + #t)))) (build-system python-build-system) (arguments `(#:phases @@ -2838,9 +2706,9 @@ logic-free templating system Mustache.") (("def test_parallel_with_interactively_defined_functions" line) (string-append "@SkipTest\n" line))) #t))))) + ;; Provide nose to enable tests command (native-inputs - `(("python-setuptools" ,python-setuptools) - ("python-nose" ,python-nose) + `(("python-nose" ,python-nose) ("python-sphinx" ,python-sphinx) ("python-docutils" ,python-docutils) ("python-numpydoc" ,python-numpydoc))) @@ -2870,8 +2738,6 @@ logging and tracing of the execution.") (base32 "1ylnjnw1x4b2y7blr6x35ncdzn69k253kw4cdkv6asdb21w73ny7")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (arguments '(#:tests? #f)) ; no setup.py test command (home-page "http://docutils.sourceforge.net/") @@ -2899,8 +2765,6 @@ reStructuredText.") (base32 "0lagrwifsgn0s8bzqahpr87p7gd38xja8f06akscinp6hj89283k")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (home-page "http://pygments.org/") (synopsis "Syntax highlighting") (description @@ -2924,9 +2788,8 @@ reStructuredText.") (base32 "011xizm3jnmf4cvs5i6kgf6c5nn046h79i8j0vd0f27yw9j3p4wl")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools) - ("python-jinja2" ,python-jinja2) + (propagated-inputs + `(("python-jinja2" ,python-jinja2) ("python-docutils" ,python-docutils) ("python-pygments" ,python-pygments))) (home-page "http://sphinx-doc.org/") @@ -2953,17 +2816,6 @@ sources.") (base32 "19nw3rn7awplcdrz63kg1njqwkbymfg9lwn7l2grhdyhyr2gaa8g")))) (build-system python-build-system) - (arguments - `(;; With standard flags, the install phase attempts to create a zip'd - ;; egg file, and fails with an error: 'ZIP does not support timestamps - ;; before 1980' - #:configure-flags '("--single-version-externally-managed" - "--record=sphinx-rtd-theme.txt"))) - (native-inputs - `(("python-setuptools" ,python-setuptools))) - (inputs - `(("python-docutils" ,python-docutils) - ("python-sphinx" ,python-sphinx))) (home-page "https://github.com/snide/sphinx_rtd_theme/") (synopsis "ReadTheDocs.org theme for Sphinx") (description "A theme for Sphinx used by ReadTheDocs.org.") @@ -2972,6 +2824,36 @@ sources.") (define-public python2-sphinx-rtd-theme (package-with-python2 python-sphinx-rtd-theme)) +(define-public python-rst.linker + (package + (name "python-rst.linker") + (version "1.7") + (source + (origin + (method url-fetch) + (uri (pypi-uri "rst.linker" version)) + (sha256 + (base32 + "0bh4lnj2p1nh0wf5pgxgfbrp27xhb1rinahkb5j7s3qprq6qn0sr")))) + (build-system python-build-system) + (propagated-inputs + `(("python-dateutil" ,python-dateutil-2) + ("python-six" ,python-six))) + (native-inputs + `(("python-setuptools-scm" ,python-setuptools-scm))) + ;; Test would require path.py, which would introduce a cyclic dependence. + (arguments `(#:tests? #f)) + ;; Note: As of version 1.7 the documentation is not worth building. + (home-page "https://github.com/jaraco/rst.linker") + (synopsis "Sphinx plugin to add links and timestamps") + (description "rst.linker allows to automatically replace text by a +reStructuredText external reference or timestamps. It's primary purpose is to +augment the changelog, but it can be used for other documents, too.") + (license license:expat))) + +(define-public python2-rst.linker + (package-with-python2 python-rst.linker)) + (define-public python-feedgenerator (package (name "python-feedgenerator") @@ -2982,11 +2864,18 @@ sources.") (uri (pypi-uri "feedgenerator" version)) (sha256 (base32 - "0mkimp1fpdan4p3882vzcws4l594k71ich4g0wq97jbra7p602n0")))) + "0mkimp1fpdan4p3882vzcws4l594k71ich4g0wq97jbra7p602n0")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Remove pre-compiled .pyc files from source. + (for-each delete-file-recursively + (find-files "." "__pycache__" #:directories? #t)) + (for-each delete-file (find-files "." "\\.pyc$")) + #t)))) (build-system python-build-system) - (native-inputs - `(("python-setuptools" ,python-setuptools) - ("python-pytz" ,python-pytz) + (propagated-inputs + `(("python-pytz" ,python-pytz) ("python-six" ,python-six))) (home-page "https://github.com/getpelican/feedgenerator") (synopsis @@ -3011,11 +2900,6 @@ which can produce feeds in RSS 2.0, RSS 0.91, and Atom formats.") (base32 "1dpq0vb01p36jjwbhhd08ylvrnyvcc82yxx3mwjx6awrycjyw6j7")))) (build-system python-build-system) - (native-inputs - `(("python-setuptools" ,python-setuptools))) - ;; No "test" command supplied to setuptools, so unless there's another way - ;; to run tests, we're skipping them! - (arguments '(#:tests? #f)) (home-page "http://pythonhosted.org/blinker/") (synopsis "Fast, simple object-to-object and broadcast signaling") (description @@ -3038,7 +2922,7 @@ interested parties to subscribe to events, or \"signals\".") (base32 "1hn94rb4q3zmcq16in055xikal4dba5hfx3zznq7warllcgc9f8k")))) (build-system python-build-system) - (inputs + (propagated-inputs `(("python-feedgenerator" ,python-feedgenerator) ("python-jinja2" ,python-jinja2) ("python-pygments" ,python-pygments) @@ -3104,8 +2988,9 @@ and is very extensible.") (system* "nosetests" "-v" "sklearn"))) (alist-delete 'check %standard-phases))))) (inputs - `(("openblas" ,openblas) - ("python-nose" ,python-nose))) + `(("openblas" ,openblas))) + (native-inputs + `(("python-nose" ,python-nose))) (propagated-inputs `(("python-numpy" ,python-numpy) ("python-scipy" ,python-scipy))) @@ -3114,11 +2999,10 @@ and is very extensible.") (description "Scikit-learn provides simple and efficient tools for data mining and data analysis.") - (license license:bsd-3) - (properties `((python2-variant . ,(delay python2-scikit-learn)))))) + (license license:bsd-3))) (define-public python2-scikit-learn - (package-with-python2 (strip-python2-variant python-scikit-learn))) + (package-with-python2 python-scikit-learn)) (define-public python-scikit-image (package @@ -3133,33 +3017,24 @@ mining and data analysis.") (sha256 (base32 "0jz416fqvpahqyffw8plmszzfj669w8wvf3y9clnr5lr6a7md3kn")))) (build-system python-build-system) + ;; See DEPENDS.txt for the list of build and run time requiremnts (propagated-inputs `(("python-matplotlib" ,python-matplotlib) ("python-networkx" ,python-networkx) - ("python-numpy" ,python-numpy) ("python-scipy" ,python-scipy) - ("python-six" ,python-six) ("python-pillow" ,python-pillow))) (native-inputs - `(("python-cython" ,python-cython) - ("python-setuptools" ,python-setuptools))) + `(("python-numpy" ,python-numpy) + ("python-cython" ,python-cython) + ("python-six" ,python-six))) (home-page "http://scikit-image.org/") (synopsis "Image processing in Python") (description "Scikit-image is a collection of algorithms for image processing.") - (license license:bsd-3) - (properties `((python2-variant . ,(delay python2-scikit-image)))))) + (license license:bsd-3))) (define-public python2-scikit-image - (let ((scikit-image (package-with-python2 - (strip-python2-variant python-scikit-image)))) - (package (inherit scikit-image) - (native-inputs - `(("python2-mock" ,python2-mock) - ,@(package-native-inputs scikit-image))) - (propagated-inputs - `(("python2-pytz" ,python2-pytz) - ,@(package-propagated-inputs scikit-image)))))) + (package-with-python2 python-scikit-image)) (define-public python-redis (package @@ -3176,9 +3051,9 @@ mining and data analysis.") (build-system python-build-system) ;; Tests require a running Redis server (arguments '(#:tests? #f)) - (native-inputs - `(("python-setuptools" ,python-setuptools) - ("python-pytest" ,python-pytest))) + ;; As long as we are not running test, we do not need this input :-) + ;;(native-inputs + ;; `(("python-pytest" ,python-pytest))) (home-page "https://github.com/andymccurdy/redis-py") (synopsis "Redis Python client") (description @@ -3204,8 +3079,6 @@ mining and data analysis.") (propagated-inputs `(("python-click" ,python-click) ("python-redis" ,python-redis))) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (home-page "http://python-rq.org/") (synopsis "Simple job queues for Python") (description @@ -3271,8 +3144,7 @@ writing C extensions for Python as easy as Python itself.") (build-system python-build-system) (arguments `(#:python ,python-2)) (native-inputs - `(("python2-pytest" ,python2-pytest) ; needed for running tests - ("python2-setuptools" ,python2-setuptools))) + `(("python2-pytest" ,python2-pytest))) ; needed for running tests (home-page "https://rpython.readthedocs.org") (synopsis "Framework for implementing interpreters and virtual machines") (description "RPython is a translation and support framework for @@ -3296,16 +3168,16 @@ between language specification and implementation aspects.") "1bjjhvncraka5s6i4lg644jrxij6bvycxy7an20gcz3a0m11iygp")))) (build-system python-build-system) (inputs - `(("python-nose" ,python-nose) - ("openblas" ,openblas) + `(("openblas" ,openblas) ("lapack" ,lapack))) (native-inputs - `(("gfortran" ,gfortran))) + `(("python-nose" ,python-nose) + ("gfortran" ,gfortran))) (arguments `(#:phases - (alist-cons-before - 'build 'set-environment-variables - (lambda* (#:key inputs #:allow-other-keys) + (modify-phases %standard-phases + (add-before 'build 'set-environment-variables + (lambda* (#:key inputs #:allow-other-keys) (call-with-output-file "site.cfg" (lambda (port) (format port @@ -3314,7 +3186,8 @@ libraries = openblas library_dirs = ~a/lib include_dirs = ~a/include -[lapack] +# backslash-n to make emacs happy +\n[lapack] lapack_libs = lapack library_dirs = ~a/lib include_dirs = ~a/include @@ -3327,18 +3200,17 @@ include_dirs = ~a/include (substitute* "numpy/distutils/system_info.py" (("c = distutils\\.ccompiler\\.new_compiler\\(\\)") "c = distutils.ccompiler.new_compiler(); c.set_executables(compiler='gcc',compiler_so='gcc',linker_exe='gcc',linker_so='gcc -shared')")) - #t) + #t)) ;; Tests can only be run after the library has been installed and not ;; within the source directory. - (alist-cons-after - 'install 'check - (lambda _ + (delete 'check) + (add-after 'install 'check + (lambda* (#:key outputs inputs #:allow-other-keys) + ;; Make installed package available for running the tests + (add-installed-pythonpath inputs outputs) (with-directory-excursion "/tmp" (zero? (system* "python" "-c" - "import numpy; numpy.test(verbose=2)")))) - (alist-delete - 'check - %standard-phases))))) + "import numpy; numpy.test(verbose=2)")))))))) (home-page "http://www.numpy.org/") (synopsis "Fundamental package for scientific computing with Python") (description "NumPy is the fundamental package for scientific computing @@ -3371,12 +3243,11 @@ capabilities.") ("python2-matplotlib" ,python2-matplotlib) ("python2-pandas" ,python2-pandas) ("python2-scikit-learn" ,python2-scikit-learn) - ("python2-cython" ,python2-cython) ("python2-pysnptools" ,python2-pysnptools))) (native-inputs `(("unzip" ,unzip) - ("python2-mock" ,python2-mock) - ("python2-setuptools" ,python2-setuptools))) + ("python2-cython" ,python2-cython) + ("python2-mock" ,python2-mock))) (home-page "http://research.microsoft.com/en-us/um/redmond/projects/mscompbio/fastlmm/") (synopsis "Perform genome-wide association studies on large data sets") (description @@ -3390,15 +3261,15 @@ association studies (GWAS) on extremely large data sets.") (name "python-numpy") (outputs '("out" "doc")) (inputs - `(("which" ,which) - ("python-setuptools" ,python-setuptools) - ("python-matplotlib" ,python-matplotlib) - ("python-sphinx" ,python-sphinx) + `(("which" ,which))) + (propagated-inputs + `(("python-matplotlib" ,python-matplotlib) ("python-pyparsing" ,python-pyparsing) - ("python-numpydoc" ,python-numpydoc) ,@(package-inputs python-numpy-bootstrap))) (native-inputs `(("pkg-config" ,pkg-config) + ("python-sphinx" ,python-sphinx) + ("python-numpydoc" ,python-numpydoc) ("texlive" ,texlive) ("texinfo" ,texinfo) ("perl" ,perl) @@ -3409,7 +3280,10 @@ association studies (GWAS) on extremely large data sets.") ((#:phases phases) `(alist-cons-after 'install 'install-doc - (lambda* (#:key outputs #:allow-other-keys) + (lambda* (#:key inputs outputs #:allow-other-keys) + ;; Make installed package available for building the + ;; documentation + (add-installed-pythonpath inputs outputs) (let* ((data (string-append (assoc-ref outputs "doc") "/share")) (doc (string-append data "/doc/" ,name "-" @@ -3516,11 +3390,10 @@ that client code uses to construct the grammar directly in Python code.") (substitute* "numpydoc/tests/test_plot_directive.py" (("3") "2")))))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools) - ("python-docutils" ,python-docutils) - ("python-sphinx" ,python-sphinx) - ("python-nose" ,python-nose))) + (native-inputs + `(("python-sphinx" ,python-sphinx))) + (native-inputs + `(("python-nose" ,python-nose))) (home-page "https://pypi.python.org/pypi/numpydoc") (synopsis "Numpy's Sphinx extensions") @@ -3555,11 +3428,10 @@ doing the same calculation in Python. In addition, its multi-threaded capabilities can make use of all your cores, which may accelerate computations, most specially if they are not memory-bounded (e.g. those using transcendental functions).") - (license license:expat) - (properties `((python2-variant . ,(delay python2-numexpr)))))) + (license license:expat))) (define-public python2-numexpr - (package-with-python2 (strip-python2-variant python-numexpr))) + (package-with-python2 python-numexpr)) (define-public python-matplotlib (package @@ -3582,6 +3454,11 @@ transcendental functions).") ("python-pygobject" ,python-pygobject) ("gobject-introspection" ,gobject-introspection) ("python-tkinter" ,python "tk") + ("python-dateutil" ,python-dateutil-2) + ("python-numpy" ,python-numpy-bootstrap) + ("python-pillow" ,python-pillow) + ("python-pytz" ,python-pytz) + ("python-six" ,python-six) ;; The 'gtk+' package (and 'gdk-pixbuf', 'atk' and 'pango' propagated ;; from 'gtk+') provides the required 'typelib' files used by ;; 'gobject-introspection'. The location of these files is set with the @@ -3598,21 +3475,11 @@ transcendental functions).") ("python-pycairo" ,python-pycairo) ("python-cairocffi" ,python-cairocffi))) (inputs - `(("python-setuptools" ,python-setuptools) - ("python-dateutil" ,python-dateutil-2) - ("python-six" ,python-six) - ("python-pytz" ,python-pytz) - ("python-numpy" ,python-numpy-bootstrap) - ("python-sphinx" ,python-sphinx) - ("python-numpydoc" ,python-numpydoc) - ("python-nose" ,python-nose) - ("python-mock" ,python-mock) - ("libpng" ,libpng) + `(("libpng" ,libpng) ("imagemagick" ,imagemagick) ("freetype" ,freetype) ("cairo" ,cairo) ("glib" ,glib) - ("python-pillow" ,python-pillow) ;; FIXME: Add backends when available. ;("python-wxpython" ,python-wxpython) ;("python-pyqt" ,python-pyqt) @@ -3620,6 +3487,10 @@ transcendental functions).") ("tk" ,tk))) (native-inputs `(("pkg-config" ,pkg-config) + ("python-sphinx" ,python-sphinx) + ("python-numpydoc" ,python-numpydoc) + ("python-nose" ,python-nose) + ("python-mock" ,python-mock) ("texlive" ,texlive) ("texinfo" ,texinfo))) (arguments @@ -3644,11 +3515,14 @@ backend = TkAgg~%" (assoc-ref inputs "tk")))))) (alist-cons-after 'install 'install-doc - (lambda* (#:key outputs #:allow-other-keys) + (lambda* (#:key inputs outputs #:allow-other-keys) (let* ((data (string-append (assoc-ref outputs "doc") "/share")) (doc (string-append data "/doc/" ,name "-" ,version)) (info (string-append data "/info")) (html (string-append doc "/html"))) + ;; Make installed package available for building the + ;; documentation + (add-installed-pythonpath inputs outputs) (with-directory-excursion "doc" ;; Produce pdf in 'A4' format. (substitute* (find-files "." "conf\\.py") @@ -3718,15 +3592,11 @@ toolkits.") (propagated-inputs `(("python2-numpy" ,python2-numpy) ("python2-scipy" ,python2-scipy) - ("python2-pytz" ,python2-pytz) - ("python2-cython" ,python2-cython))) - (inputs - `(("python2-dateutil-2" ,python2-dateutil-2) - ("python2-pandas" ,python2-pandas) - ("python2-six" ,python2-six))) + ("python2-pandas" ,python2-pandas))) (native-inputs - `(("unzip" ,unzip) - ("python2-setuptools" ,python2-setuptools))) + `(("python2-cython" ,python2-cython))) + (native-inputs + `(("unzip" ,unzip))) (home-page "http://research.microsoft.com/en-us/um/redmond/projects/mscompbio/") (synopsis "Library for reading and manipulating genetic data") (description @@ -3748,15 +3618,15 @@ operators such as union, intersection, and difference.") (base32 "0nhan2qvrw7b7gg5zddwa22kybdv3x1g26vkd7q8lvnkgzrs4dga")))) (build-system python-build-system) + (propagated-inputs + `(("python-six" ,python-six))) (inputs - `(("python-six" ,python-six) - ("readline" ,readline) + `(("readline" ,readline) ("icu4c" ,icu4c) ("pcre" ,pcre) ("r" ,r))) (native-inputs - `(("python-setuptools" ,python-setuptools) - ("zlib" ,zlib))) + `(("zlib" ,zlib))) (home-page "http://rpy.sourceforge.net/") (synopsis "Python interface to the R language") (description "rpy2 is a redesign and rewrite of rpy. It is providing a @@ -3813,7 +3683,9 @@ functions.") libraries = openblas library_dirs = ~a/lib include_dirs = ~a/include -[atlas] + +# backslash-n to make emacs happy +\n[atlas] library_dirs = ~a/lib atlas_libs = openblas " @@ -3823,11 +3695,14 @@ atlas_libs = openblas #t) (alist-cons-after 'install 'install-doc - (lambda* (#:key outputs #:allow-other-keys) + (lambda* (#:key inputs outputs #:allow-other-keys) (let* ((data (string-append (assoc-ref outputs "doc") "/share")) (doc (string-append data "/doc/" ,name "-" ,version)) (html (string-append doc "/html")) (pyver ,(string-append "PYVER="))) + ;; Make installed package available for building the + ;; documentation + (add-installed-pythonpath inputs outputs) (with-directory-excursion "doc" ;; Fix generation of images for mathematical expressions. (substitute* (find-files "source" "conf\\.py") @@ -3951,16 +3826,10 @@ simple and Pythonic domain language.") (description "@code{pycodestyle} (formerly pep8) is a tool to check Python code against some of the style conventions in @url{http://www.python.org/dev/peps/pep-0008/,PEP 8}.") - (license license:expat) - (properties `((python2-variant . ,(delay python2-pycodestyle)))))) + (license license:expat))) (define-public python2-pycodestyle - (let ((base (package-with-python2 (strip-python2-variant - python-pycodestyle)))) - (package (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-pycodestyle)) (define-public python-orderedmultidict (package @@ -3993,16 +3862,10 @@ Python code against some of the style conventions in dictionaries. A multivalue dictionary is a dictionary that can store multiple values for the same key. An ordered multivalue dictionary is a multivalue dictionary that retains the order of insertions and deletions.") - (license license:unlicense) - (properties `((python2-variant . ,(delay python2-orderedmultidict)))))) + (license license:unlicense))) (define-public python2-orderedmultidict - (let ((base (package-with-python2 (strip-python2-variant - python-orderedmultidict)))) - (package (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-orderedmultidict)) (define-public python-furl (package @@ -4025,16 +3888,10 @@ multivalue dictionary that retains the order of insertions and deletions.") (synopsis "URL manipulation in Python") (description "Furl provides an easy-to-use alternative to the @code{urllib} and @code{urlparse} modules for manipulating URLs.") - (license license:unlicense) - (properties `((python2-variant . ,(delay python2-furl)))))) + (license license:unlicense))) (define-public python2-furl - (let ((base (package-with-python2 (strip-python2-variant - python-furl)))) - (package (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-furl)) (define-public python-flask-babel (package @@ -4058,16 +3915,10 @@ multivalue dictionary that retains the order of insertions and deletions.") (description "This package implements internationalization and localization support for Flask. This is based on the Python babel module as well as pytz - both of which are installed automatically if you install this library.") - (license license:bsd-3) - (properties `((python2-variant . ,(delay python2-flask-babel)))))) + (license license:bsd-3))) (define-public python2-flask-babel - (let ((base (package-with-python2 (strip-python2-variant - python-flask-babel)))) - (package (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-flask-babel)) (define-public python-sqlalchemy-utils (package @@ -4103,16 +3954,10 @@ You might also want to install the following optional dependencies: @item @code{python-flask-babel} @end enumerate ") - (properties `((python2-variant . ,(delay python2-sqlalchemy-utils)))) (license license:bsd-3))) (define-public python2-sqlalchemy-utils - (let ((base (package-with-python2 - (strip-python2-variant python-sqlalchemy-utils)))) - (package (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-sqlalchemy-utils)) (define-public python-alembic (package @@ -4139,16 +3984,10 @@ You might also want to install the following optional dependencies: (description "Alembic is a lightweight database migration tool for usage with the SQLAlchemy Database Toolkit for Python.") - (license license:expat) - (properties `((python2-variant . ,(delay python2-alembic)))))) + (license license:expat))) (define-public python2-alembic - (let ((alembic (package-with-python2 - (strip-python2-variant python-alembic)))) - (package - (inherit alembic) - (native-inputs `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs alembic)))))) + (package-with-python2 python-alembic)) (define-public python-distutils-extra (package @@ -4164,8 +4003,6 @@ SQLAlchemy Database Toolkit for Python.") (base32 "0lx15kcbby9zisx33p2h5hgakgwh2bvh0ibag8z0px4j6ifhs41x")))) (build-system python-build-system) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (home-page "https://launchpad.net/python-distutils-extra/") (synopsis "Enhancements to Python's distutils") (description @@ -4193,17 +4030,10 @@ Python's distutils.") (base32 "0y7vzff9xgbnaay7m0va1arl6g68ncwrvbgwl7jqlclsahzzb09d")))) (build-system python-build-system) - (native-inputs - `(("python2-setuptools" ,python2-setuptools))) (arguments ;; incompatible with Python 3 (exception syntax) `(#:python ,python-2 - #:tests? #f - ;; With standard flags, the install phase attempts to create a zip'd - ;; egg file, and fails with an error: 'ZIP does not support timestamps - ;; before 1980' - #:configure-flags '("--single-version-externally-managed" - "--record=elib.txt"))) + #:tests? #f)) (home-page "https://github.com/dieterv/elib.intl") (synopsis "Enhanced internationalization for Python") (description @@ -4224,8 +4054,7 @@ services for your Python modules and applications.") "0xkv0p1d73gz0a1qaasf0ai4262g8f334j07vd60bjrxs2wr3nmj")))) (build-system python-build-system) (native-inputs - `(("python-setuptools" ,python-setuptools) - ("python-nose" ,python-nose))) + `(("python-nose" ,python-nose))) (inputs `(("freetype" ,freetype) ("lcms" ,lcms) @@ -4234,27 +4063,16 @@ services for your Python modules and applications.") ("openjpeg" ,openjpeg) ("libtiff" ,libtiff) ("libwebp" ,libwebp))) - (propagated-inputs - `(;; Used at runtime for pkg_resources - ("python-setuptools" ,python-setuptools))) (arguments `(#:phases (modify-phases %standard-phases - (add-before - 'install 'disable-egg-compression - (lambda _ - ;; Leave the .egg uncompressed since compressing it would - ;; prevent the GC from identifying run-time dependencies. - ;; See <http://bugs.gnu.org/20765>. - (let ((port (open-file "setup.cfg" "a"))) - (display "\n[easy_install]\nzip_ok = 0\n" - port) - (close-port port) - #t))) (add-after 'install 'check-installed - (lambda _ + (lambda* (#:key outputs inputs #:allow-other-keys) (begin (setenv "HOME" (getcwd)) + ;; Make installed package available for running the + ;; tests + (add-installed-pythonpath inputs outputs) (and (zero? (system* "python" "selftest.py" "--installed")) (zero? (system* "python" "test-installed.py")))))) @@ -4289,8 +4107,7 @@ a general image processing tool.") (outputs '("out" "doc")) (build-system python-build-system) (native-inputs - `(("pkg-config" ,pkg-config) - ("python-setuptools" ,python-setuptools))) + `(("pkg-config" ,pkg-config))) (arguments `(#:phases (alist-replace @@ -4341,8 +4158,7 @@ a front-end for C compilers or analysis tools.") (native-inputs `(("pkg-config" ,pkg-config) ("python-sphinx" ,python-sphinx) - ("python-pytest" ,python-pytest) - ("python-setuptools" ,python-setuptools))) + ("python-pytest" ,python-pytest))) (arguments `(#:phases (alist-cons-after @@ -4380,12 +4196,10 @@ a front-end for C compilers or analysis tools.") "0655hzxv57h1a9ja9kwp0ichbkhf3djw32k33d66xp0q37dq2y81")))) (build-system python-build-system) (inputs - `(("libxcb" ,libxcb) - ("python-six" ,python-six))) - (native-inputs - `(("python-setuptools" ,python-setuptools))) + `(("libxcb" ,libxcb))) (propagated-inputs - `(("python-cffi" ,python-cffi))) ; used at run time + `(("python-cffi" ,python-cffi) ; used at run time + ("python-six" ,python-six))) (arguments `(#:phases (alist-cons-after @@ -4429,8 +4243,7 @@ support for Python 3 and PyPy. It is based on cffi.") (native-inputs `(("pkg-config" ,pkg-config) ("python-sphinx" ,python-sphinx) - ("python-docutils" ,python-docutils) - ("python-setuptools" ,python-setuptools))) + ("python-docutils" ,python-docutils))) (propagated-inputs `(("python-xcffib" ,python-xcffib))) ; used at run time (arguments @@ -4477,8 +4290,6 @@ PNG, PostScript, PDF, and SVG file output.") (base32 "1a5vwhflfd9sh3rfb40xlyipldgdzfff6brman57hqv3661jw0lh")))) (build-system python-build-system) (arguments '(#:tests? #f)) ; no test target - (native-inputs - `(("python-setuptools" ,python-setuptools))) (home-page "https://pypi.python.org/pypi/decorator/") (synopsis "Python module to simplify usage of decorators") (description @@ -4509,8 +4320,7 @@ etc. The core of this module is a decorator factory.") ;; should be set to the path of the libdrmaa library. (arguments '(#:tests? #f)) (native-inputs - `(("python-nose" ,python-nose) - ("python-setuptools" ,python-setuptools))) + `(("python-nose" ,python-nose))) (home-page "https://pypi.python.org/pypi/drmaa") (synopsis "Python bindings for the DRMAA library") (description @@ -4536,12 +4346,10 @@ Python language binding specification.") (sha256 (base32 "1gzjg2k6f14i1msm2b0ax8d9ds1hvk6qd5nlaivg8m4cxqp4cp1x")))) (build-system python-build-system) - (inputs + (propagated-inputs `(("python-psutil" ,python-psutil) ("python-drmaa" ,python-drmaa) ("python-pyzmq" ,python-pyzmq))) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (home-page "https://github.com/pygridtools/gridmap") (synopsis "Create jobs on a cluster directly from Python") (description @@ -4594,7 +4402,6 @@ child application and control it as if a human were typing commands.") (base32 "1gqr73i150yzj3mz32854vj93x07yr52kn8fdckwa41ll8wgficc")))) (build-system python-build-system) - (native-inputs `(("python-setuptools" ,python-setuptools))) (home-page "https://github.com/pypa/setuptools_scm/") (synopsis "Manage Python package versions in SCM metadata") (description @@ -4617,14 +4424,33 @@ them as the version argument or in a SCM managed file.") "path.py/path.py-" version ".tar.gz")) (sha256 (base32 "1p8s1l2vfkqhqxdhqlj0g1jjw4f1as2frr35sjcpjjpd5a89y41f")))) + (outputs '("out" "doc")) (build-system python-build-system) (propagated-inputs `(("python-appdirs" ,python-appdirs))) (native-inputs - `(("python-setuptools" ,python-setuptools) - ("python-setuptools-scm" ,python-setuptools-scm) + `(("python-setuptools-scm" ,python-setuptools-scm) + ("python-sphinx" ,python-sphinx) + ("python-rst.linker" ,python-rst.linker) ("python-pytest" ,python-pytest) ("python-pytest-runner" ,python-pytest-runner))) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'build 'build-doc + (lambda _ + (setenv "LANG" "en_US.UTF-8") + (zero? (system* "python" "setup.py" "build_sphinx")))) + (add-after 'install 'install-doc + (lambda* (#:key outputs #:allow-other-keys) + (let* ((data (string-append (assoc-ref outputs "doc") "/share")) + (doc (string-append data "/doc/" ,name "-" ,version)) + (html (string-append doc "/html"))) + (mkdir-p html) + (for-each (lambda (file) + (copy-file file (string-append doc "/" file))) + '("README.rst" "CHANGES.rst")) + (copy-recursively "build/sphinx/html" html))))))) (home-page "http://github.com/jaraco/path.py") (synopsis "Python module wrapper for built-in os.path") (description @@ -4649,8 +4475,6 @@ common operations on files to be invoked on those path objects directly.") (build-system python-build-system) (propagated-inputs `(("python-pathpy" ,python-pathpy))) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (home-page "https://github.com/vivainio/pickleshare") (synopsis "Tiny key value database with concurrency support") (description @@ -4679,8 +4503,7 @@ PickleShare.") (base32 "0wwi1c6md4vkbcsfsf8dklf3vr4mcdj4mpxkanwgb6jb1432x5yw")))) (build-system python-build-system) (native-inputs - `(("python-setuptools" ,python-setuptools) - ("unzip" ,unzip))) + `(("unzip" ,unzip))) (home-page "http://cheeseshop.python.org/pypi/simplegeneric") (synopsis "Python module for simple generic functions") (description @@ -4915,8 +4738,7 @@ tools for mocking system commands and recording calls to those.") ("python-nose" ,python-nose) ("python-sphinx" ,python-sphinx) ("texlive" ,texlive) - ("texinfo" ,texinfo) - ("python-setuptools" ,python-setuptools))) + ("texinfo" ,texinfo))) (arguments `(#:phases (modify-phases %standard-phases @@ -4930,6 +4752,8 @@ tools for mocking system commands and recording calls to those.") (info (string-append data "/info")) (examples (string-append doc "/examples"))) (setenv "LANG" "en_US.utf8") + ;; Make installed package available for running the tests + (add-installed-pythonpath inputs outputs) (with-directory-excursion "docs" ;; FIXME: pdf fails to build ;;(system* "make" "pdf" "PAPER=a4") @@ -4949,9 +4773,11 @@ tools for mocking system commands and recording calls to those.") (delete 'check) (add-after 'install 'check - (lambda* (#:key outputs tests? #:allow-other-keys) + (lambda* (#:key inputs outputs tests? #:allow-other-keys) (if tests? (with-directory-excursion "/tmp" + ;; Make installed package available for running the tests + (add-installed-pythonpath inputs outputs) (setenv "HOME" "/tmp/") ;; required by a test (zero? (system* (string-append (assoc-ref outputs "out") "/bin/iptest")))) @@ -4986,7 +4812,7 @@ computing.") (arguments `(#:tests? #f ,@(package-arguments ipython))) ;; FIXME: add pyreadline once available. - (inputs + (native-inputs `(("python2-mock" ,python2-mock) ,@(package-inputs ipython)))))) @@ -5002,8 +4828,6 @@ computing.") (base32 "0cafaiwixgpxwh9dsd28qb0dbzsj6xpxjdkyk30ns91ps10mq422")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (home-page "http://cheeseshop.python.org/pypi/isodate") (synopsis @@ -5030,8 +4854,6 @@ ISO 8601 dates, time and duration.") (build-system python-build-system) (propagated-inputs `(("python-six" ,python-six))) ; required to "import html5lib" - (inputs - `(("python-setuptools" ,python-setuptools))) (arguments `(#:test-target "check")) (home-page @@ -5085,7 +4907,6 @@ and written in Python.") (substitute* "urwid/tests/test_event_loops.py" (("test_remove_watch_file") "disable_remove_watch_file"))))))) - (native-inputs `(("python-setuptools" ,python-setuptools))) (home-page "http://urwid.org") (synopsis "Console user interface library for Python") (description @@ -5114,7 +4935,7 @@ features useful for text console applications.") (build-system python-build-system) (arguments '(#:tests? #f)) ; no tests - (inputs `(("python-urwid" ,python-urwid))) + (propagated-inputs `(("python-urwid" ,python-urwid))) (home-page "https://github.com/pazz/urwidtrees") (synopsis "Tree widgets for urwid") (description "Urwidtrees is a Widget Container API for the @code{urwid} @@ -5183,8 +5004,7 @@ implementation of D-Bus.") "0w4jb0wpx785qw42r3h4fh7gl5w2968q48i7gygybsfxck8nzffs")))) (build-system python-build-system) (inputs - `(("python-setuptools" ,python-setuptools) - ("sqlite" ,sqlite))) + `(("sqlite" ,sqlite))) (arguments `(#:phases ;; swap check and install phases @@ -5219,8 +5039,7 @@ translate the complete SQLite API into Python.") (build-system python-build-system) (inputs `(("libxml2" ,libxml2) - ("libxslt" ,libxslt) - ("python-setuptools" ,python-setuptools))) + ("libxslt" ,libxslt))) (home-page "http://lxml.de/") (synopsis "Python XML processing library") @@ -5266,14 +5085,12 @@ screen-scraping projects. It offers Pythonic idioms for navigating, searching, and modifying a parse tree, providing a toolkit for dissecting a document and extracting what you need. It automatically converts incoming documents to Unicode and outgoing documents to UTF-8.") - (license license:expat) - (properties `((python2-variant . ,(delay python2-beautifulsoup4)))))) + (license license:expat))) (define-public python2-beautifulsoup4 (package (inherit (package-with-python2 (strip-python2-variant python-beautifulsoup4))) - (native-inputs `(("python2-setuptools" ,python2-setuptools))) (arguments `(#:python ,python-2)))) (define-public python2-cssutils @@ -5291,8 +5108,6 @@ converts incoming documents to Unicode and outgoing documents to UTF-8.") (native-inputs `(("python2-mock" ,python2-mock) ; for the tests ("unzip" ,unzip))) ; for unpacking the source - (inputs - `(("python2-setuptools" ,python2-setuptools))) (arguments `(#:python ,python-2 ; Otherwise tests fail with a syntax error. #:tests? #f ; The tests apparently download an external URL. @@ -5318,8 +5133,6 @@ options.") (base32 "1xg6gbva1yswghiycmgincv6ab4bn7hpm720ndbj40h8xycmnfvi")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (arguments ;; tests fail with message ;; AttributeError: 'module' object has no attribute 'tests' @@ -5352,8 +5165,6 @@ another XPath engine to find the matching elements in an XML or HTML document.") (base32 "1plw237a4zib4z8s62g0mrs8gm3kjfrp5sxh6bbk9nl3rdls2mln")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (home-page "https://bitbucket.org/al45tair/netifaces") (synopsis @@ -5381,8 +5192,7 @@ interfaces in an easy and portable manner.") (propagated-inputs `(("python-decorator" ,python-decorator))) (native-inputs - `(("python-setuptools" ,python-setuptools) - ("python-nose" ,python-nose))) + `(("python-nose" ,python-nose))) (home-page "http://networkx.github.io/") (synopsis "Python module for creating and manipulating graphs and networks") (description @@ -5406,7 +5216,6 @@ of the structure, dynamics, and functions of complex networks.") (sha256 (base32 "0fi4b63sj60hvi7rfydvmz2icl4wj74djw5sn2gl8hxd02qw4b91")))) (build-system python-build-system) - (inputs `(("python-setuptools" ,python-setuptools))) (home-page "https://bitbucket.org/johanneskoester/snakemake") (synopsis "Python-based execution environment for make-like workflows") (description @@ -5445,9 +5254,7 @@ and statistical routines from scipy and statsmodels.") (package (inherit base) (propagated-inputs `(("python2-pytz" ,python2-pytz) - ,@(package-propagated-inputs base))) - (native-inputs `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + ,@(package-propagated-inputs base)))))) (define-public python-sympy (package @@ -5462,8 +5269,6 @@ and statistical routines from scipy and statsmodels.") (sha256 (base32 "19yp0gy4i7p4g6l3b8vaqkj9qj7yqb5kqy0qgbdagpzgkdz958yz")))) (build-system python-build-system) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (home-page "http://www.sympy.org/") (synopsis "Python library for symbolic mathematics") (description @@ -5493,16 +5298,10 @@ as possible in order to be comprehensible and easily extensible.") "q is a Python module for \"print\" style of debugging Python code. It provides convenient short API for print out of values, tracebacks, and falling into the Python interpreter.") - (license license:asl2.0) - (properties `((python2-variant . ,(delay python2-q)))))) + (license license:asl2.0))) (define-public python2-q - (let ((base (package-with-python2 (strip-python2-variant python-q)))) - (package - (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-q)) (define-public python-testlib (package @@ -5517,21 +5316,8 @@ falling into the Python interpreter.") (sha256 (base32 "1mz26cxn4x8bbgv0rn0mvj2z05y31rkc8009nvdlb3lam5b4mj3y")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (native-inputs - `(("unzip" ,unzip))) - (arguments - `(#:phases - (alist-replace - 'unpack - (lambda* (#:key inputs outputs #:allow-other-keys) - (let ((unzip (string-append (assoc-ref inputs "unzip") - "/bin/unzip")) - (source (assoc-ref inputs "source"))) - (and (zero? (system* unzip source)) - (chdir (string-append "testlib-" ,version))))) - %standard-phases))) + `(("unzip" ,unzip))) ; for unpacking the source (synopsis "Python micro test suite harness") (description "A micro unittest suite harness for Python.") (home-page "https://github.com/trentm/testlib") @@ -5556,8 +5342,6 @@ falling into the Python interpreter.") (arguments `(#:python ,python-2 ;Python 2 only #:tests? #f)) ;no tests - (inputs - `(("python-setuptools" ,python-setuptools))) (home-page "http://python-xlib.sourceforge.net/") (synopsis "Python X11 client library") (description @@ -5579,9 +5363,7 @@ It is written entirely in Python.") "171b7ip0hsq5qm83np40h3phlr36ym18w0lay0a8v08kvy3sy1jv")))) (build-system python-build-system) (native-inputs - `(("python-setuptools" ,python-setuptools))) - (inputs - `(("python-six" ,python-six))) + `(("python-six" ,python-six))) ; required for conversion, not at run-time (home-page "http://docs.python.org/3/library/functools.html#functools.singledispatch") (synopsis "Backport of singledispatch feature from Python 3.4") @@ -5606,7 +5388,7 @@ It is written entirely in Python.") (build-system python-build-system) (native-inputs `(("python-certifi" ,python-certifi))) - (inputs + (propagated-inputs `(("python-backports-abc" ,python-backports-abc))) (home-page "http://www.tornadoweb.org/") (synopsis "Python web framework and asynchronous networking library") @@ -5622,14 +5404,11 @@ connection to each user.") (define-public python2-tornado (let ((tornado (package-with-python2 (strip-python2-variant python-tornado)))) (package (inherit tornado) - (inputs + (propagated-inputs `(("python2-backport-ssl-match-hostname" ,python2-backport-ssl-match-hostname) ("python2-singledispatch" ,python2-singledispatch) - ,@(package-inputs tornado))) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs tornado)))))) + ,@(package-propagated-inputs tornado)))))) ;; the python- version can be removed with python-3.5 (define-public python-backports-abc @@ -5644,8 +5423,6 @@ connection to each user.") (base32 "19fh75lni9pb673n2fn505m1rckm0af0szcv5xx1qm1xpa940glb")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (home-page "https://github.com/cython/backports_abc") (synopsis "Backport of additions to the 'collections.abc' module") (description @@ -5711,8 +5488,7 @@ applications.") `(("zeromq" ,zeromq))) (native-inputs `(("pkg-config" ,pkg-config) - ("python-nose" ,python-nose) - ("python-setuptools" ,python-setuptools))) + ("python-nose" ,python-nose))) (home-page "http://github.com/zeromq/pyzmq") (synopsis "Python bindings for 0MQ") (description @@ -5734,8 +5510,6 @@ applications.") (base32 "002rkl4lsn6x2mxmf8ar00l0m8i3mzrc6pnzz77blyksmpsxa4x1")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (home-page "http://pep8.readthedocs.org/") (synopsis "Python style guide checker") (description @@ -5758,8 +5532,6 @@ PEP 8.") (base32 "0qs2sgqszq7wcplis8509wk2ygqcrwzbs1ghfj3svvivq2j377pk")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (home-page "https://github.com/pyflakes/pyflakes") (synopsis "Passive checker of Python programs") @@ -5782,10 +5554,9 @@ PEP 8.") (base32 "0yr08a36h8lqlif10l4xcikbbig7q8f41gqywir7rrvnv3mi4aws")))) (build-system python-build-system) - (inputs + (native-inputs `(("python-pytest" ,python-pytest) - ("python-pytest-runner" ,python-pytest-runner) - ("python-setuptools" ,python-setuptools))) + ("python-pytest-runner" ,python-pytest-runner))) (home-page "https://github.com/flintwork/mccabe") (synopsis "McCabe checker, plugin for flake8") (description @@ -5805,8 +5576,7 @@ complexity of Python source code.") (uri (pypi-uri "mccabe" version)) (sha256 (base32 - "0fi4a81kr5bcv5p4xgibqr595hyj5dafkqgsmfk96mfy8w71fajs")))) - (inputs `(("python-setuptools" ,python-setuptools))))) + "0fi4a81kr5bcv5p4xgibqr595hyj5dafkqgsmfk96mfy8w71fajs")))))) (define-public python2-mccabe-0.2.1 (package-with-python2 python-mccabe-0.2.1)) @@ -5859,14 +5629,22 @@ complexity of Python source code.") (uri (pypi-uri "flake8" version)) (sha256 (base32 - "0bs9cz4fr99r2rwig1b8jwaadl1nan7kgpdzqwj0bwbckwbmh7nc")))) + "0bs9cz4fr99r2rwig1b8jwaadl1nan7kgpdzqwj0bwbckwbmh7nc")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Remove pre-compiled .pyc files from source. + (for-each delete-file-recursively + (find-files "." "__pycache__" #:directories? #t)) + (for-each delete-file (find-files "." "\\.pyc$")) + #t)))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools) - ("python-pep8" ,python-pep8) + (propagated-inputs + `(("python-pep8" ,python-pep8) ("python-pyflakes" ,python-pyflakes) - ("python-mccabe" ,python-mccabe) - ("python-mock" ,python-mock) + ("python-mccabe" ,python-mccabe))) + (native-inputs + `(("python-mock" ,python-mock) ; TODO: only required for < 3.3 ("python-nose" ,python-nose))) (home-page "https://gitlab.com/pycqa/flake8") (synopsis @@ -5882,12 +5660,12 @@ complexity of Python source code.") ;; necessary once python-hacking > 0.10.2 is released. (define-public python-flake8-2.2.4 (package (inherit python-flake8) - (inputs - `(("python-setuptools" ,python-setuptools) - ("python-pep8" ,python-pep8-1.5.7) + (propagated-inputs + `(("python-pep8" ,python-pep8-1.5.7) ("python-pyflakes" ,python-pyflakes-0.8.1) - ("python-mccabe" ,python-mccabe-0.2.1) - ("python-mock" ,python-mock) + ("python-mccabe" ,python-mccabe-0.2.1))) + (native-inputs + `(("python-mock" ,python-mock) ("python-nose" ,python-nose))) (version "2.2.4") (source @@ -5896,7 +5674,15 @@ complexity of Python source code.") (uri (pypi-uri "flake8" version)) (sha256 (base32 - "1r9wsry4va45h1rck5hxd3vzsg2q3y6lnl6pym1bxvz8ry19jwx8")))))) + "1r9wsry4va45h1rck5hxd3vzsg2q3y6lnl6pym1bxvz8ry19jwx8")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Remove pre-compiled .pyc files from source. + (for-each delete-file-recursively + (find-files "." "__pycache__" #:directories? #t)) + (for-each delete-file (find-files "." "\\.pyc$")) + #t)))))) (define-public python2-flake8-2.2.4 (package-with-python2 python-flake8-2.2.4)) @@ -5916,9 +5702,8 @@ complexity of Python source code.") (base32 "17zqjp9m4d1w3jf2rbbq5xshcw24q1vlcv24gkgfqqyyymajxahx")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools) - ("python-nose" ,python-nose) + (native-inputs + `(("python-nose" ,python-nose) ("python-cython" ,python-cython))) (home-page "https://github.com/lepture/mistune") (synopsis "Markdown parser in pure Python") @@ -5976,9 +5761,8 @@ markdown_py is also provided to convert Markdown files to HTML.") (base32 "0nggns5kikn32yyda2zrj1xdmh49pi3v0drggcdwljbv36r8zdyw")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools) - ("python-nose" ,python-nose))) + (native-inputs + `(("python-nose" ,python-nose))) (arguments `(#:phases (modify-phases %standard-phases @@ -6031,10 +5815,7 @@ term.js Javascript terminal emulator library.") (propagated-inputs `(("python2-backport-ssl-match-hostname" ,python2-backport-ssl-match-hostname) - ,@(package-propagated-inputs terminado))) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs terminado)))))) + ,@(package-propagated-inputs terminado)))))) (define-public python-fonttools (package @@ -6049,15 +5830,23 @@ term.js Javascript terminal emulator library.") (base32 "08ay3x4ijarwhl60gqx2i9jzq6pxs20p4snc2d1q5jagh4rn39lb")))) (build-system python-build-system) - (arguments '(#:test-target "check")) - (propagated-inputs - ;; XXX: module not found if setuptools is not available. - `(("python-setuptools" ,python-setuptools))) + (arguments + '(#:test-target "check" + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-setuppy + ;; Remove the undocumented "extra_path" argument, which adds an + ;; intervening directories between site-packages and the package + ;; directory. + (lambda _ + (substitute* "setup.py" + (("^[ \t]*extra_path *= *'FontTools',") "")) + #t))))) (home-page "http://github.com/behdad/fonttools") (synopsis "Tools to manipulate font files") (description "FontTools/TTX is a library to manipulate font files from Python. It -supports reading and writinfg of TrueType/OpenType fonts, reading and writing +supports reading and writing of TrueType/OpenType fonts, reading and writing of AFM files, reading (and partially writing) of PS Type 1 fonts. The package also contains a tool called “TTX” which converts TrueType/OpenType fonts to and from an XML-based format.") @@ -6082,8 +5871,6 @@ from an XML-based format.") (base32 "0g6n288l83sfwavxh1aryi0aqvsr3sp7v6f903mckwqa4scpky62")))) (build-system python-build-system) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (synopsis "Tool and library for manipulating LilyPond files") (description "This package provides a Python library to parse, manipulate or create documents in LilyPond format. A command line program ly is also @@ -6106,8 +5893,6 @@ provided that can be used to do various manipulations with LilyPond files.") (base32 "1iddva7v3fq0aqzsahkazxr7vpw28mqcrsy818z4wyiqnkplbhlg")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (home-page "http://github.com/ActiveState/appdirs") (synopsis "Determine platform-specific dirs, e.g. a \"user data dir\"") @@ -6136,8 +5921,7 @@ should be stored on various operating systems.") `(("fuse" ,fuse) ("attr" ,attr))) (native-inputs - `(("pkg-config" ,pkg-config) - ("python-setuptools" ,python-setuptools))) + `(("pkg-config" ,pkg-config))) (synopsis "Python bindings for FUSE") (description "Python-LLFUSE is a set of Python bindings for the low level FUSE API.") @@ -6182,14 +5966,10 @@ should be stored on various operating systems.") suitable for similar data to JSON. This package provides CPython bindings for reading and writing MessagePack data.") (home-page "https://pypi.python.org/pypi/msgpack-python/") - (license license:asl2.0) - (properties `((python2-variant . ,(delay python2-msgpack)))))) + (license license:asl2.0))) (define-public python2-msgpack - (package (inherit (package-with-python2 - (strip-python2-variant python-msgpack))) - (native-inputs - `(("python2-setuptools" ,python2-setuptools))))) + (package-with-python2 python-msgpack)) (define-public python-netaddr (package @@ -6207,8 +5987,6 @@ reading and writing MessagePack data.") "06dxjlbcicq7q3vqy8agq11ra01kvvd47j4mk6dmghjsyzyckxd1")))) (build-system python-build-system) (arguments `(#:tests? #f)) ;; No tests. - (inputs - `(("python-setuptools" ,python-setuptools))) (home-page "https://github.com/drkjam/netaddr/") (synopsis "Pythonic manipulation of network addresses") (description @@ -6238,8 +6016,6 @@ and MAC network addresses.") ;; Tests are not included in the tarball, they are only available in the ;; git repository. `(#:tests? #f)) - (inputs - `(("python-setuptools" ,python-setuptools))) (home-page "https://github.com/GrahamDumpleton/wrapt") (synopsis "Module for decorators, wrappers and monkey patching") (description @@ -6263,8 +6039,6 @@ and MAC network addresses.") (base32 "0c7gh3lsdjds262h0v1sqc66l7hqgfwbakn96qrhdbl0i3vm5yz8")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (home-page "https://bitbucket.org/micktwomey/pyiso8601") (synopsis "Module to parse ISO 8601 dates") (description @@ -6290,8 +6064,6 @@ and MAC network addresses.") (base32 "0yz0bcbwx8r2c01czzfpbrxddynxyk9k95jj8h6sgcb7xmfvl998")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (home-page "https://github.com/atdt/monotonic") (synopsis "Implementation of time.monotonic() for Python 2 & < 3.3") (description @@ -6314,9 +6086,8 @@ fractional seconds) of a clock which never goes backwards.") (base32 "02bhhzijfhv8hmi1i54d4b0v43liwhnywhflvxsv4x3zax9s3afq")))) (build-system python-build-system) - (inputs - `(("python-nose" ,python-nose) - ("python-setuptools" ,python-setuptools))) + (native-inputs + `(("python-nose" ,python-nose))) (home-page "http://webob.org/") (synopsis "WSGI request and response object") (description @@ -6344,8 +6115,7 @@ object to help create WSGI responses.") ;; Current test in setup.py does not work as of 1.0.0, so use nose to ;; run tests instead for now. (replace 'check (lambda _ (zero? (system* "nosetests"))))))) - (native-inputs `(("python-nose" ,python-nose) - ("python-setuptools" ,python-setuptools))) + (native-inputs `(("python-nose" ,python-nose))) (home-page "http://www.python-excel.org/") (synopsis "Library for extracting data from Excel files") (description "This packages provides a library to extract data from @@ -6371,8 +6141,6 @@ Unicode-aware. It is not intended as an end-user tool.") (base32 "0diwsicwmiq2cpzpxri7cyl5fmsvicafw6nfqf6p6p322dji2g45")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (home-page "http://code.google.com/p/prettytable/") (synopsis "Display tabular data in an ASCII table format") (description @@ -6395,7 +6163,15 @@ printing of sub-tables by specifying a row range.") (uri (pypi-uri "tables" version)) (sha256 (base32 - "117s6w7s3yxafpmf3zz3svana7xfrsviw01va1xp7h8ylx8v6r1m")))) + "117s6w7s3yxafpmf3zz3svana7xfrsviw01va1xp7h8ylx8v6r1m")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Remove pre-compiled .pyc files from source. + (for-each delete-file-recursively + (find-files "." "__pycache__" #:directories? #t)) + (for-each delete-file (find-files "." "\\.pyc$")) + #t)))) (build-system python-build-system) (arguments `(;; FIXME: python-build-system does not pass configure-flags to "build" @@ -6426,8 +6202,7 @@ printing of sub-tables by specifying a row range.") `(("python-numexpr" ,python-numexpr) ("python-numpy" ,python-numpy))) (native-inputs - `(("python-setuptools" ,python-setuptools) - ("python-cython" ,python-cython) + `(("python-cython" ,python-cython) ("pkg-config" ,pkg-config))) (inputs `(("hdf5" ,hdf5) @@ -6476,8 +6251,6 @@ suitable for a wide range of protocols based on the ASN.1 specification.") (base32 "0drqgw81xd3fxdlg89kgd79zzrabvfncvkbybi2wr6w2y4s1jmhh")))) (build-system python-build-system) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (propagated-inputs `(("python-pyasn1" ,python-pyasn1))) (home-page "http://sourceforge.net/projects/pyasn1/") @@ -6508,15 +6281,10 @@ implementations of ASN.1-based codecs and protocols.") in Python. This library is used to create, poke at, and manipulate IPv4 and IPv6 addresses and networks. This is a port of the Python 3.3 ipaddress module to older versions of Python.") - (license license:psfl) - (properties `((python2-variant . ,(delay python2-ipaddress)))))) + (license license:psfl))) (define-public python2-ipaddress - (let ((base (package-with-python2 (strip-python2-variant python-ipaddress)))) - (package (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-ipaddress)) (define-public python2-ipaddr (package @@ -6560,8 +6328,6 @@ versions of Python.") (base32 "0frxgmgi234lr9hylg62j69j4ik5zhg0wz05w5dhyacbjfnrl68n")))) (build-system python-build-system) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (home-page "https://github.com/kjd/idna") (synopsis "Internationalized domain names in applications") (description @@ -6590,8 +6356,6 @@ specification.") (base32 "0r5r7ygz9m6d2bklflbl84cqhjkc2q12xgis8268ygjh30g2q3wk")))) (build-system python-build-system) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (home-page "https://github.com/alex/pretend") (synopsis "Library for stubbing in Python") (description @@ -6616,8 +6380,6 @@ responses, rather than doing any computation.") (base32 "1bnd1bricyhxa27rhr0ljk0kacxzvysd3ar2j2hlv13a2k6zw4z5")))) (build-system python-build-system) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (home-page "https://github.com/pyca/cryptography") (synopsis "Test vectors for the cryptography package") (description @@ -6665,7 +6427,6 @@ responses, rather than doing any computation.") (native-inputs `(("python-cryptography-vectors" ,python-cryptography-vectors) ("python-hypothesis" ,python-hypothesis) - ("python-setuptools" ,python-setuptools) ("python-pretend" ,python-pretend) ("python-pyasn1" ,python-pyasn1) ("python-pyasn1-modules" ,python-pyasn1-modules) @@ -6697,22 +6458,20 @@ message digests and key derivation functions.") (define-public python-pyopenssl (package (name "python-pyopenssl") - (version "16.1.0") + (version "16.2.0") (source (origin (method url-fetch) (uri (pypi-uri "pyOpenSSL" version)) (sha256 (base32 - "0prm06zz7hl6bk5s2lqzw25lq6smayfv2fgiliw2rbqxlyiavxw8")))) + "0vji4yrfshs15xpczbhzhasnjrwcarsqg87n98ixnyafnyxs6ybp")))) (build-system python-build-system) (propagated-inputs `(("python-cryptography" ,python-cryptography) ("python-six" ,python-six))) (inputs `(("openssl" ,openssl))) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (home-page "https://github.com/pyca/pyopenssl") (synopsis "Python wrapper module around the OpenSSL library") (description @@ -6735,10 +6494,9 @@ library.") (base32 "08cm8d4228fj0qnrysy3qv1a6022zr3dcs25amd14lgxil6vvx26")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools) + (native-inputs + `(;; Tests ("python-virtualenv" ,python-virtualenv) - ;; Tests ("python-mock" ,python-mock) ("python-pytest" ,python-pytest) ("python-scripttest" ,python-scripttest))) @@ -6843,18 +6601,9 @@ a hash value.") (substitute* "libarchive/ffi.py" (("find_library\\('archive'\\)") (string-append "'" libarchive - "/lib/libarchive.so'")))) - - ;; Do not make a compressed egg (see - ;; <http://bugs.gnu.org/20765>). - (let ((port (open-file "setup.cfg" "a"))) - (display "\n[easy_install]\nzip_ok = 0\n" - port) - (close-port port) - #t)))))) + "/lib/libarchive.so'"))))))))) (inputs - `(("python-setuptools" ,python-setuptools) - ("libarchive" ,libarchive))) + `(("libarchive" ,libarchive))) (home-page "https://github.com/Changaco/python-libarchive-c") (synopsis "Python interface to libarchive") (description @@ -6895,17 +6644,10 @@ Python's @code{ctypes} foreign function interface (FFI).") (synopsis "Python bindings to the libmagic file type guesser. Note that this module and the python-magic module both provide a \"magic.py\" file; these two modules, which are different and were developed separately, both -serve the same purpose: provide Python bindings for libmagic.") - (properties `((python2-variant . ,(delay python2-file)))))) +serve the same purpose: provide Python bindings for libmagic."))) (define-public python2-file - (let ((base (package-with-python2 (strip-python2-variant python-file)))) - (package - (inherit base) - (source (package-source file)) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-file)) (define-public python-debian (package @@ -6921,10 +6663,8 @@ serve the same purpose: provide Python bindings for libmagic.") (base32 "193faznwnjc3n5991wyzim6h9gyq1zxifmfrnpm3avgkh7ahyynh")))) (build-system python-build-system) - (inputs + (propagated-inputs `(("python-six" ,python-six))) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (home-page "http://packages.debian.org/sid/python-debian") (synopsis "Debian package related modules") (description @@ -6967,8 +6707,6 @@ Debian-related files, such as: ("python-jsonschema" ,python-jsonschema) ("python-jupyter-core" ,python-jupyter-core) ("python-traitlets" ,python-traitlets))) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (home-page "http://jupyter.org") (synopsis "Jupyter Notebook format") (description "This package provides the reference implementation of the @@ -6992,7 +6730,6 @@ Jupyter Notebook format and Python APIs for working with notebooks.") (build-system python-build-system) (propagated-inputs `(("python-html5lib" ,python-html5lib-0.9) - ("python-setuptools" ,python-setuptools) ("python-six" ,python-six))) (native-inputs `(("python-nose" ,python-nose))) @@ -7067,7 +6804,6 @@ functions to find and load entry points.") ("python-mistune" ,python-mistune) ("python-nbformat" ,python-nbformat) ("python-pygments" ,python-pygments) - ("python-setuptools" ,python-setuptools) ("python-traitlets" ,python-traitlets))) (home-page "http://jupyter.org") (synopsis "Converting Jupyter Notebooks") @@ -7142,8 +6878,7 @@ interactive computing.") (propagated-inputs `(("python-notebook" ,python-notebook))) (native-inputs - `(("python-nose" ,python-nose) - ("python-setuptools" ,python-setuptools))) + `(("python-nose" ,python-nose))) (home-page "http://ipython.org") (synopsis "IPython HTML widgets for Jupyter") (description "This package provides interactive HTML widgets for Jupyter @@ -7170,7 +6905,6 @@ notebooks.") (propagated-inputs `(("python-ipykernel" ,python-ipykernel) ("python-ipython" ,python-ipython) - ("python-setuptools" ,python-setuptools) ("python-traitlets" ,python-traitlets) ("python-widgetsnbextension" ,python-widgetsnbextension))) (home-page "http://ipython.org") @@ -7203,8 +6937,7 @@ in the data.") ("python-ipython" ,python-ipython) ("python-jupyter-client" ,python-jupyter-client) ("python-prompt-toolkit" ,python-prompt-toolkit) - ("python-pygments" ,python-pygments) - ("python-setuptools" ,python-setuptools))) + ("python-pygments" ,python-pygments))) (home-page "https://jupyter.org") (synopsis "Jupyter terminal console") (description "This package provides a terminal-based console frontend for @@ -7234,8 +6967,7 @@ Jupyter kernels such as IJulia and IRKernel.") ("python-ipywidgets" ,python-ipywidgets) ("python-jupyter-console" ,python-jupyter-console) ("python-nbconvert" ,python-nbconvert) - ("python-notebook" ,python-notebook) - ("python-setuptools" ,python-setuptools))) + ("python-notebook" ,python-notebook))) (home-page "http://jupyter.org") (synopsis "Web application for interactive documents") (description @@ -7260,8 +6992,6 @@ simulation, statistical modeling, machine learning and much more.") (base32 "1ak87ikcw34fivcgiz2xvi938dmclh078az65l9x3rmgljrkhgp5")))) (build-system python-build-system) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (home-page "https://github.com/chardet/chardet") (synopsis "Universal encoding detector for Python 2 and 3") (description @@ -7289,8 +7019,7 @@ automatically detect a wide range of file encodings.") "16bf890xbdz3m30rsv2qacklh2rdn1zrfspfnwzx9g7vwz8yw4r1")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-setuptools" ,python-setuptools))) + `(("python-pytest" ,python-pytest))) (arguments `(#:phases (alist-replace 'check @@ -7320,8 +7049,6 @@ programatically with command-line parsers like @code{getopt} and (base32 "11p75zpfz3ffhz21nzx9wb23xs993ck5s6hkjcvhswwizni5jynw")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (home-page "http://pypi.python.org/pypi/zope.event") (synopsis "Event publishing system for Python") (description "Zope.event provides an event publishing API, intended for @@ -7346,7 +7073,7 @@ dispatching systems can be built.") (base32 "0ks8h73b2g4bkad821qbv0wzjppdrwys33i7ka45ik3wxjg1l8if")))) (build-system python-build-system) - (propagated-inputs + (native-inputs `(("python-zope-event" ,python-zope-event))) (home-page "https://github.com/zopefoundation/zope.interface") (synopsis "Python implementation of the \"design by contract\" @@ -7434,6 +7161,7 @@ forms, HTTP servers, regular expressions, and more.") (build-system python-build-system) (native-inputs `(("python-six" ,python-six) + ;("python-zope-interface" ,python-zope-interface) ("python-zope-exceptions" ,python-zope-exceptions) ("python-zope-testing" ,python-zope-testing) ("unzip" ,unzip))) @@ -7469,8 +7197,6 @@ tests.") (base32 "1rslyph0klk58dmjjy4j0jxy21k03azksixc3x2xhqbkv97cmzml")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (home-page "http://pypi.python.org/pypi/zope.i18nmessageid") (synopsis "Message identifiers for internationalization") (description "Zope.i18nmessageid provides facilities for declaring @@ -7497,7 +7223,9 @@ internationalized messages within program source text.") `(("python-zope-event" ,python-zope-event) ("python-zope-interface" ,python-zope-interface))) (native-inputs - `(("python-zope-testing" ,python-zope-testing))) + `(("python-zope-testing" ,python-zope-testing) + ("python-coverage" ,python-coverage) + ("python-nose" ,python-nose))) (home-page "http://pypi.python.org/pypi/zope.schema") (synopsis "Zope data schemas") (description "Zope.scheme provides extensions to zope.interface for @@ -7572,7 +7300,7 @@ brokering, etc.) for which the proxy is responsible.") (base32 "1nj9da4ksiyv3h8n2vpzwd0pb03mdsh7zy87hfpx72b6p2zcwg74")))) (build-system python-build-system) - (native-inputs + (propagated-inputs `(("python-zope-proxy" ,python-zope-proxy) ("python-zope-schema" ,python-zope-schema))) (home-page "http://pypi.python.org/pypi/zope.location/") @@ -7599,10 +7327,12 @@ Zope3, which are are special objects that have a structural location.") (build-system python-build-system) (propagated-inputs `(("python-zope-i18nmessageid" ,python-zope-i18nmessageid) - ("python-zope-component" ,python-zope-component) - ("python-zope-location" ,python-zope-location) ("python-zope-proxy" ,python-zope-proxy) - ("python-zope-schema" ,python-zope-schema) + ("python-zope-schema" ,python-zope-schema))) + (native-inputs + `(("python-zope-component" ,python-zope-component) + ("python-zope-configuration" ,python-zope-configuration) + ("python-zope-location" ,python-zope-location) ("python-zope-testrunner" ,python-zope-testrunner) ("python-zope-testing" ,python-zope-testing))) (home-page "http://pypi.python.org/pypi/zope.security") @@ -7715,8 +7445,7 @@ This allows one to make simple text-mode user interfaces on Unix-like systems") (propagated-inputs `(("python-pytz" ,python-pytz))) (native-inputs - `(("python-nose" ,python-nose) - ("python-setuptools" ,python-setuptools))) + `(("python-nose" ,python-nose))) (home-page "https://github.com/kurtraschke/pyRFC3339") (synopsis "Python timestamp library") (description "Python library for generating and parsing RFC 3339-compliant @@ -7768,9 +7497,8 @@ addon modules.") ;; required to parse the keyword 'install_requires' in setup.py. (patches (search-patches "python-configobj-setuptools.patch")))) (build-system python-build-system) - (native-inputs - `(("python-setuptools" ,python-setuptools) - ("python-six" ,python-six))) + (propagated-inputs + `(("python-six" ,python-six))) (synopsis "Config file reading, writing and validation") (description "ConfigObj is a simple but powerful config file reader and writer: an ini file round tripper. Its main feature is that it is very easy to @@ -7908,10 +7636,8 @@ tables.") (base32 "0h9glp1jll3z76ly3kg08aqgxqk0a68p4zi9yn50353bh5nj92v7")))) (build-system python-build-system) - (native-inputs - `(("python-six" ,python-six))) ; for tests - (inputs - `(("python-setuptools" ,python-setuptools))) + (propagated-inputs + `(("python-six" ,python-six))) (home-page "https://github.com/liris/websocket-client") (synopsis "WebSocket client for Python") (description "The Websocket-client module provides the low level APIs for @@ -7936,14 +7662,10 @@ WebSocket usage in Python programs.") (description "Library for atomic file writes using platform dependent tools for atomic file system operations.") (home-page "https://github.com/untitaker/python-atomicwrites") - (license license:expat) - (properties `((python2-variant . ,(delay python2-atomicwrites)))))) + (license license:expat))) (define-public python2-atomicwrites - (package (inherit (package-with-python2 - (strip-python2-variant python-atomicwrites))) - (native-inputs - `(("python2-setuptools" ,python2-setuptools))))) + (package-with-python2 python-atomicwrites)) (define-public python-requests-toolbelt (package @@ -8023,22 +7745,17 @@ applications.") (base32 "1iks5701qnp3dlr3q1d9qm68y2plp2m029irhpz92a44psfkjf1f")))) (build-system python-build-system) - (inputs + (native-inputs `(("python-pytest" ,python-pytest))) (synopsis "Namespace control and lazy-import mechanism") (description "With apipkg you can control the exported namespace of a Python package and greatly reduce the number of imports for your users. It is a small pure Python module that works on virtually all Python versions.") (home-page "https://bitbucket.org/hpk42/apipkg") - (license license:expat) - (properties `((python2-variant . ,(delay python2-apipkg)))))) + (license license:expat))) (define-public python2-apipkg - (package - (inherit (package-with-python2 - (strip-python2-variant python-apipkg))) - (native-inputs - `(("python2-setuptools" ,python2-setuptools))))) + (package-with-python2 python-apipkg)) (define-public python-execnet (package @@ -8059,7 +7776,7 @@ pure Python module that works on virtually all Python versions.") (native-inputs `(("python-pytest" ,python-pytest) ("python-setuptools-scm" ,python-setuptools-scm))) - (inputs + (propagated-inputs `(("python-apipkg" ,python-apipkg))) (synopsis "Rapid multi-Python deployment") (description "Execnet provides a share-nothing model with @@ -8072,17 +7789,10 @@ minimal and fast API targetting the following uses: @item write scripts to administer multiple environments @end enumerate") (home-page "http://codespeak.net/execnet/") - (license license:expat) - (properties `((python2-variant . ,(delay python2-execnet)))))) + (license license:expat))) (define-public python2-execnet - (let ((execnet (package-with-python2 - (strip-python2-variant python-execnet)))) - (package - (inherit execnet) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs execnet)))))) + (package-with-python2 python-execnet)) ;;; The software provided by this package was integrated into pytest 2.8. (define-public python-pytest-cache @@ -8096,7 +7806,7 @@ minimal and fast API targetting the following uses: (base32 "1a873fihw4rhshc722j4h6j7g3nj7xpgsna9hhg3zn6ksknnhx5y")))) (build-system python-build-system) - (inputs + (propagated-inputs `(("python-apipkg" ,python-apipkg) ("python-execnet" ,python-execnet) ("python-py" ,python-py) @@ -8105,17 +7815,10 @@ minimal and fast API targetting the following uses: (description "The pytest-cache plugin provides tools to rerun failures from the last py.test invocation.") (home-page "https://bitbucket.org/hpk42/pytest-cache/") - (license license:expat) - (properties `((python2-variant . ,(delay python2-pytest-cache)))))) + (license license:expat))) (define-public python2-pytest-cache - (let ((pytest-cache (package-with-python2 - (strip-python2-variant python-pytest-cache)))) - (package - (inherit pytest-cache) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs pytest-cache)))))) + (package-with-python2 python-pytest-cache)) (define-public python-pytest-localserver (package @@ -8138,7 +7841,7 @@ the last py.test invocation.") `(("python-pytest" ,python-pytest) ("python-requests" ,python-requests) ("python-six" ,python-six))) - (inputs + (propagated-inputs `(("python-werkzeug" ,python-werkzeug))) (synopsis "Py.test plugin to test server connections locally") (description "Pytest-localserver is a plugin for the pytest testing @@ -8160,13 +7863,13 @@ framework which enables you to test server connections locally.") (base32 "0kjj2v2dvmnpdd5h5gk9rzz0f54rhjb0yiz3zg65bmp65slfw65d")))) (build-system python-build-system) + (propagated-inputs + `(("python-six" ,python-six))) (native-inputs `(("python-pytest" ,python-pytest) - ("python-six" ,python-six) + ("python-httplib2" ,python-httplib2) + ("python-requests" ,python-requests) ("python-urllib3" ,python-urllib3))) - (propagated-inputs - `(("python-httplib2" ,python-httplib2) - ("python-requests" ,python-requests))) (synopsis "Puts a WSGI application in place of a real URI for testing") (description "Wsgi_intercept installs a WSGI application in place of a real URI for testing. Testing a WSGI application normally involves starting a @@ -8231,8 +7934,7 @@ files for use with Python.") "1d7gam3mn8v4in4p16yn3v10vps7nnaz6ilw99j4klij39dqd37p")))) (build-system python-build-system) (propagated-inputs - `(("python-docutils" ,python-docutils) - ("python-sphinx" ,python-sphinx))) + `(("python-sphinx" ,python-sphinx))) (synopsis "News Feed extension for Sphinx") (description "Sphinxcontrib-newsfeed is an extension for adding a simple Blog, News or Announcements section to a Sphinx website.") @@ -8250,8 +7952,6 @@ Blog, News or Announcements section to a Sphinx website.") (base32 "057qzi46h5dmxdqknsbrssn78lmqjlnm624iqdhrnpk26zcbi1d7")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (home-page "https://github.com/kennethreitz/args") (synopsis "Command-line argument parser") (description @@ -8272,9 +7972,8 @@ Blog, News or Announcements section to a Sphinx website.") (base32 "1an5lkkqk1zha47198p42ji3m94xmzx1a03dn7866m87n4r4q8h5")))) (build-system python-build-system) - (inputs - `(("python-args" ,python-args) - ("python-setuptools" ,python-setuptools))) + (propagated-inputs + `(("python-args" ,python-args))) (home-page "https://github.com/kennethreitz/clint") (synopsis "Command-line interface tools") (description @@ -8297,8 +7996,6 @@ output, progress bar display, and pipes.") (base32 "1fdafq5hkis1fxqlmhw0sn44zp2ar46nxhbc22cvwg7hsd8z5gsa")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (home-page "https://github.com/berkerpeksag/astor") (synopsis "Read and write Python ASTs") (description @@ -8320,9 +8017,8 @@ Abstract Syntax Tree.") (base32 "12rp1d9ba7nvd5rhaxi6xzx1rm67r1k1ylsrkzhpwnphqpb06cvj")))) (build-system python-build-system) - (inputs - `(("python-appdirs" ,python-appdirs) - ("python-setuptools" ,python-setuptools))) + (propagated-inputs + `(("python-appdirs" ,python-appdirs))) (home-page "https://github.com/alex/rply") (synopsis "Parser generator for Python") (description @@ -8345,11 +8041,10 @@ with a new public API, and RPython support.") (base32 "1msqv747iz12r73mz4qvsmlwkddwjvrahlrk7ysrcz07h7dsscxs")))) (build-system python-build-system) - (inputs + (propagated-inputs `(("python-astor" ,python-astor) ("python-clint" ,python-clint) - ("python-rply" ,python-rply) - ("python-setuptools" ,python-setuptools))) + ("python-rply" ,python-rply))) (home-page "http://hylang.org/") (synopsis "Lisp frontend to Python") (description @@ -8375,7 +8070,7 @@ Python at your fingertips, in Lisp form.") (build-system python-build-system) (arguments `(#:test-target "check")) - (inputs + (propagated-inputs `(("python-requests" ,python-requests))) (home-page "https://github.com/litl/rauth") (synopsis "Python library for OAuth 1.0/a, 2.0, and Ofly") @@ -8390,8 +8085,7 @@ authenticated session objects providing things like keep-alive.") (let ((base (package-with-python2 (strip-python2-variant python-rauth)))) (package (inherit base) - (native-inputs `(("python2-setuptools" ,python2-setuptools) - ("python2-unittest2" ,python2-unittest2) + (native-inputs `(("python2-unittest2" ,python2-unittest2) ,@(package-native-inputs base)))))) (define-public python2-functools32 @@ -8409,8 +8103,6 @@ authenticated session objects providing things like keep-alive.") (arguments `(#:python ,python-2 #:tests? #f)) ; no test target - (native-inputs - `(("python2-setuptools" ,python2-setuptools))) (home-page "https://github.com/MiCHiLU/python-functools32") (synopsis "Backport of the functools module from Python 3.2.3") @@ -8432,8 +8124,6 @@ authenticated session objects providing things like keep-alive.") "1vcb34dqhzkhbq1957vdjszhhm5y3j9ba88dgwhqx2zynhmk9qig")))) (build-system python-build-system) (arguments `(#:python ,python-2)) - (native-inputs - `(("python2-setuptools" ,python2-setuptools))) (home-page "https://github.com/agronholm/pythonfutures") (synopsis "Backport of the concurrent.futures package from Python 3.2") @@ -8474,7 +8164,6 @@ concurrent.futures package from Python 3.2") (native-inputs `(("python2-futures" ,python2-futures) ("python2-pytest" ,python2-pytest) - ("python2-setuptools" ,python2-setuptools) ,@(package-native-inputs promise)))))) (define-public python-urllib3 @@ -8491,13 +8180,12 @@ concurrent.futures package from Python 3.2") (build-system python-build-system) (arguments `(#:tests? #f)) (native-inputs - `(("python-setuptools" ,python-setuptools) - ;; some packages for tests + `(;; some packages for tests ("python-nose" ,python-nose) ("python-mock" ,python-mock) ("python-tornado" ,python-tornado))) (propagated-inputs - `(;; packages for https security + `(;; extra packages for https security ("python-certifi" ,python-certifi) ("python-ndg-httpsclient" ,python-ndg-httpsclient) ("python-pyasn1" ,python-pyasn1) @@ -8525,8 +8213,6 @@ supports url redirection and retries, and also gzip and deflate decoding.") (base32 "1716z9pq1r5ys3nkg7wdrb3h2f9rmd0zdxpxzmx3bgwgf6xg48gb")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (synopsis "colored terminal text rendering for Python") (description "Colorama is a Python library for rendering colored terminal text.") @@ -8548,9 +8234,8 @@ text.") (base32 "1dcxvszbikgzh99ybdc7jq0zb9wspy2ds8z9mjsqiyv3q884xpr5")))) (build-system python-build-system) - (inputs - `(("python-pyasn1" ,python-pyasn1) - ("python-setuptools" ,python-setuptools))) + (propagated-inputs + `(("python-pyasn1" ,python-pyasn1))) (synopsis "Pure-Python RSA implementation") (description "Python-RSA is a pure-Python RSA implementation. It supports encryption and decryption, signing and verifying signatures, and key @@ -8574,8 +8259,6 @@ library as well as on the command line.") (base32 "18qfzfm40bgx672lkg8q9x5hdh76n7vax99aank7vh2nw21wg70m")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (synopsis "Plugin and hook calling mechanism for Python") (description "Pluggy is an extraction of the plugin manager as used by Pytest but stripped of Pytest specific details.") @@ -8598,15 +8281,16 @@ Pytest but stripped of Pytest specific details.") "1vj73ar4rimq3fwy5r2z3jv4g9qbh8rmpmncsc00g0k310acqzxz")))) (build-system python-build-system) (arguments - ;; FIXME: Tests require a newer version of pytest, but upgrading our - ;; pytest breaks other packages. + ;; FIXME: Tests require pytest-timeout, which itself requires + ;; pytest>=2.8.0 for installation. '(#:tests? #f)) - (inputs - `(("python-setuptools" ,python-setuptools) - ("python-pluggy" ,python-pluggy) + (propagated-inputs + `(("python-pluggy" ,python-pluggy) ; >=0.3.0,<0.4.0 ("python-py" ,python-py) - ("python-virtualenv" ,python-virtualenv) - ("python-pytest" ,python-pytest))) + ("python-virtualenv" ,python-virtualenv))) + (native-inputs + `(; FIXME: Missing: ("python-pytest-timeout" ,python-pytest-timeout) + ("python-pytest" ,python-pytest))) ; >= 2.3.5 (home-page "http://tox.testrun.org/") (synopsis "Virtualenv-based automation of test activities") (description "Tox is a generic virtualenv management and test command line @@ -8631,8 +8315,6 @@ servers.") (base32 "0g9xvl69y7nr3w7ag4fsp6sm4fqf6vrqjw7504x2hzrrsh3ampq8")))) (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) (synopsis "JSON Matching Expressions") (description "JMESPath (pronounced “james path”) is a Python library that allows one to declaratively specify how to extract elements from a JSON @@ -8655,15 +8337,16 @@ document.") (base32 "1zxczlwqy9bl27d9bc5x99mb5mcsxm350240lp5nx7014xb311lj")))) (build-system python-build-system) - (inputs + (propagated-inputs `(("python-dateutil" ,python-dateutil-2) ("python-docutils" ,python-docutils) - ("python-mock" ,python-mock) + ("python-jmespath" ,python-jmespath))) + (native-inputs + `(("python-mock" ,python-mock) ("python-nose" ,python-nose) - ("python-setuptools" ,python-setuptools) + ("behave" ,behave) ("python-tox" ,python-tox) - ("python-wheel" ,python-wheel) - ("python-jmespath" ,python-jmespath))) + ("python-wheel" ,python-wheel))) (home-page "https://github.com/boto/botocore") (synopsis "Low-level interface to AWS") (description "Botocore is a Python library that provides a low-level @@ -8685,18 +8368,18 @@ interface to the Amazon Web Services (AWS) API.") (base32 "0lclasm0wnayd3b8zl9l91i32nbgrhh0ncf9lksss4cv0myfwmfg")))) (build-system python-build-system) - (inputs + (propagated-inputs `(("python-colorama" ,python-colorama) + ("python-botocore" ,python-botocore) + ("python-s3transfer" ,python-s3transfer) ("python-docutils" ,python-docutils) - ("python-mock" ,python-mock) + ("python-rsa" ,python-rsa))) + (native-inputs + `(("python-mock" ,python-mock) ("python-nose" ,python-nose) - ("python-rsa" ,python-rsa) - ("python-setuptools" ,python-setuptools) ("python-sphinx" ,python-sphinx) ("python-tox" ,python-tox) - ("python-wheel" ,python-wheel) - ("python-botocore" ,python-botocore) - ("python-s3transfer" ,python-s3transfer))) + ("python-wheel" ,python-wheel))) (home-page "http://aws.amazon.com/cli/") (synopsis "Command line client for AWS") (description "AWS CLI provides a unified command line interface to the @@ -8731,8 +8414,7 @@ seamlessly into your existing Python unit testing work flow.") (strip-python2-variant python-hypothesis)))) (package (inherit hypothesis) (native-inputs - `(("python2-enum34" ,python2-enum34) - ("python2-setuptools" ,python2-setuptools)))))) + `(("python2-enum34" ,python2-enum34)))))) (define-public python-pytest-subtesthack (package @@ -8745,9 +8427,6 @@ seamlessly into your existing Python unit testing work flow.") (base32 "15kzcr5pchf3id4ikdvlv752rc0j4d912n589l4rifp8qsj19l1x")))) (build-system python-build-system) - (native-inputs - `(;; setuptools required for python-2 variant - ("python-setuptools" ,python-setuptools))) (propagated-inputs `(("python-pytest" ,python-pytest))) (synopsis "Set-up and tear-down fixtures for unit tests") @@ -8820,14 +8499,10 @@ python-xdo for newer bindings.)") "WTForms is a flexible forms validation and rendering library for Python web development. It is very similar to the web form API available in Django, but is a standalone package.") - (license license:bsd-3) - (properties `((python2-variant . ,(delay python2-wtforms)))))) + (license license:bsd-3))) (define-public python2-wtforms - (package - (inherit (package-with-python2 - (strip-python2-variant python-wtforms))) - (inputs `(("python2-setuptools" ,python2-setuptools))))) + (package-with-python2 python-wtforms)) (define-public python-mako (package @@ -8841,25 +8516,19 @@ available in Django, but is a standalone package.") (base32 "136kcjbs0s98qkx8a418b05dfblqp0kiiqyx8vhx4rarwc7bqi3n")))) (build-system python-build-system) + (propagated-inputs + `(("python-markupsafe" ,python-markupsafe))) (native-inputs - `(("python-markupsafe" ,python-markupsafe) - ("python-mock" ,python-mock) + `(("python-mock" ,python-mock) ("python-nose" ,python-nose))) (home-page "http://www.makotemplates.org/") (synopsis "Templating language for Python") (description "Mako is a templating language for Python that compiles templates into Python modules.") - (license license:expat) - (properties `((python2-variant . ,(delay python2-mako)))))) + (license license:expat))) (define-public python2-mako - (let ((base (package-with-python2 - (strip-python2-variant python-mako)))) - (package - (inherit base) - (native-inputs - (cons `("python2-setuptools" ,python2-setuptools) - (package-native-inputs base)))))) + (package-with-python2 python-mako)) (define-public python-waitress (package @@ -8877,14 +8546,10 @@ templates into Python modules.") (synopsis "Waitress WSGI server") (description "Waitress is meant to be a production-quality pure-Python WSGI server with very acceptable performance.") - (license license:zpl2.1) - (properties `((python2-variant . ,(delay python2-waitress)))))) + (license license:zpl2.1))) (define-public python2-waitress - (package - (inherit (package-with-python2 - (strip-python2-variant python-waitress))) - (native-inputs `(("python2-setuptools" ,python2-setuptools))))) + (package-with-python2 python-waitress)) (define-public python-wsgiproxy2 (package @@ -8917,16 +8582,10 @@ server with very acceptable performance.") WSGIProxy turns WSGI function calls into HTTP requests. It also includes code to sign requests and pass private data, and to spawn subprocesses to handle requests.") - (license license:expat) - (properties `((python2-variant . ,(delay python2-wsgiproxy2)))))) + (license license:expat))) (define-public python2-wsgiproxy2 - (let ((wsgiproxy2 (package-with-python2 - (strip-python2-variant python-wsgiproxy2)))) - (package - (inherit wsgiproxy2) - (inputs `(("python2-setuptools" ,python2-setuptools) - ,@(package-inputs wsgiproxy2)))))) + (package-with-python2 python-wsgiproxy2)) (define-public python-pastedeploy (package @@ -8942,10 +8601,6 @@ and to spawn subprocesses to handle requests.") (build-system python-build-system) (native-inputs `(("python-nose" ,python-nose))) - (propagated-inputs - ;; This package uses pkg_resources, part of setuptools, during runtime, - ;; hence why not a native-input. - `(("python-setuptools" ,python-setuptools))) (home-page "http://pythonpaste.org/deploy/") (synopsis "Load, configure, and compose WSGI applications and servers") @@ -8976,9 +8631,7 @@ file.") (native-inputs `(("python-nose" ,python-nose))) (propagated-inputs - `(;; Uses pkg_resources provided by setuptools internally. - ("python-setuptools" ,python-setuptools) - ("python-six" ,python-six))) + `(("python-six" ,python-six))) (arguments '(;; Tests don't pass on Python 3, but work fine on Python 2. ;; (As of 2.0.2, Python 3 support in Paste is presently a bit broken, @@ -9020,9 +8673,7 @@ follows ideas flowing from WSGI (Web Standard Gateway Interface).") (native-inputs `(("python-nose" ,python-nose))) (propagated-inputs - `(;; Uses pkg_resources provided by setuptools internally. - ("python-setuptools" ,python-setuptools) - ("python-paste" ,python-paste) + `(("python-paste" ,python-paste) ("python-pastedeploy" ,python-pastedeploy))) (home-page "http://pythonpaste.org/script/") (arguments @@ -9066,16 +8717,10 @@ layouts.") (description "pyquery allows you to make jQuery queries on xml documents. The API is as much as possible the similar to jQuery. pyquery uses lxml for fast xml and html manipulation.") - (license license:bsd-3) - (properties `((python2-variant . ,(delay python2-pyquery)))))) + (license license:bsd-3))) (define-public python2-pyquery - (let ((pyquery (package-with-python2 - (strip-python2-variant python-pyquery)))) - (package - (inherit pyquery) - (native-inputs `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs pyquery)))))) + (package-with-python2 python-pyquery)) (define-public python-webtest (package @@ -9118,16 +8763,10 @@ fast xml and html manipulation.") (description "Webtest allows you to test your Python web applications without starting an HTTP server. It supports anything that supports the minimum of WSGI.") - (license license:expat) - (properties `((python2-variant . ,(delay python2-webtest)))))) + (license license:expat))) (define-public python2-webtest - (let ((webtest (package-with-python2 - (strip-python2-variant python-webtest)))) - (package - (inherit webtest) - (native-inputs `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs webtest)))))) + (package-with-python2 python-webtest)) (define-public python-anyjson (package @@ -9166,8 +8805,7 @@ and provides a uniform API regardless of which JSON implementation is used.") (arguments `(;; Unlike the python 3 variant, we do run tests. See above! #:tests? #t ,@(package-arguments anyjson))) - (native-inputs `(("python2-setuptools" ,python2-setuptools) - ("python2-nose" ,python2-nose)))))) + (native-inputs `(("python2-nose" ,python2-nose)))))) (define-public python-amqp (package @@ -9203,9 +8841,7 @@ alternative when librabbitmq is not available.") ;; unmaintained. Weirdly, does not do this on the python 3 ;; version? #:tests? #f - ,@(package-arguments amqp))) - (native-inputs `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs amqp)))))) + ,@(package-arguments amqp)))))) (define-public python-kombu (package @@ -9242,9 +8878,8 @@ RabbitMQ messaging server is the most popular implementation.") (strip-python2-variant python-kombu)))) (package (inherit kombu) - (inputs `(("python2-setuptools" ,python2-setuptools) - ("python2-unittest2" ,python2-unittest2) - ,@(package-inputs kombu)))))) + (native-inputs `(("python2-unittest2" ,python2-unittest2) + ,@(package-native-inputs kombu)))))) (define-public python-billiard (package @@ -9276,8 +8911,7 @@ Python 2.4 and 2.5, and will draw its fixes/improvements from python-trunk.") (strip-python2-variant python-billiard)))) (package (inherit billiard) - (native-inputs `(("python2-setuptools" ,python2-setuptools) - ("python2-unittest2" ,python2-unittest2) + (native-inputs `(("python2-unittest2" ,python2-unittest2) ("python2-mock" ,python2-mock) ,@(package-native-inputs billiard)))))) @@ -9304,10 +8938,8 @@ Python 2.4 and 2.5, and will draw its fixes/improvements from python-trunk.") (system* "nosetests" "--exclude=^test_safe_to_remove.*"))))))) (native-inputs `(("python-nose" ,python-nose))) - (inputs + (propagated-inputs `(("python-pytz" ,python-pytz) - ("python-amqp" ,python-amqp) - ("python-anyjson" ,python-anyjson) ("python-billiard" ,python-billiard) ("python-kombu" ,python-kombu))) (home-page "http://celeryproject.org") @@ -9326,8 +8958,7 @@ synchronously (wait until ready).") (strip-python2-variant python-celery)))) (package (inherit celery) - (native-inputs `(("python2-setuptools" ,python2-setuptools) - ("python2-unittest2" ,python2-unittest2) + (native-inputs `(("python2-unittest2" ,python2-unittest2) ("python2-mock" ,python2-mock) ,@(package-native-inputs celery)))))) @@ -9353,14 +8984,10 @@ synchronously (wait until ready).") "This package contains codecs for transliterating ISO 10646 texts into best-effort representations using smaller coded character sets (ASCII, ISO 8859, etc.).") - (license license:expat) - (properties `((python2-variant . ,(delay python2-translitcodec)))))) + (license license:expat))) (define-public python2-translitcodec - (package - (inherit (package-with-python2 - (strip-python2-variant python-translitcodec))) - (native-inputs `(("python2-setuptools" ,python2-setuptools))))) + (package-with-python2 python-translitcodec)) (define-public python-editor (package @@ -9381,14 +9008,10 @@ ISO 8859, etc.).") (description "python-editor is a library that provides the editor module for programmatically interfacing with your system's $EDITOR.") - (license license:asl2.0) - (properties `((python2-variant . ,(delay python2-editor)))))) + (license license:asl2.0))) (define-public python2-editor - (package - (inherit (package-with-python2 - (strip-python2-variant python-editor))) - (inputs `(("python2-setuptools" ,python2-setuptools))))) + (package-with-python2 python-editor)) (define-public python-sphinxcontrib-programoutput (package @@ -9402,20 +9025,15 @@ programmatically interfacing with your system's $EDITOR.") "098as6z1s0gb4dh5xcr1fd2vpm91zj93jzvgawspxf5s4hqs0xhp")))) (build-system python-build-system) (propagated-inputs - `(("python-docutils" ,python-docutils) - ("python-sphinx" ,python-sphinx))) + `(("python-sphinx" ,python-sphinx))) (synopsis "Sphinx extension to include program output") (description "A Sphinx extension to literally insert the output of arbitrary commands into documents, helping you to keep your command examples up to date.") (home-page "https://github.com/lunaryorn/sphinxcontrib-programoutput") - (license license:bsd-2) - (properties `((python2-variant . ,(delay python2-sphinxcontrib-programoutput)))))) + (license license:bsd-2))) (define-public python2-sphinxcontrib-programoutput - (package - (inherit (package-with-python2 - (strip-python2-variant python-sphinxcontrib-programoutput))) - (native-inputs `(("python2-setuptools" ,python2-setuptools))))) + (package-with-python2 python-sphinxcontrib-programoutput)) (define-public python-sphinx-repoze-autointerface (package @@ -9429,8 +9047,7 @@ commands into documents, helping you to keep your command examples up to date.") "08ycivzf7bh4a1zcyp31hbyqs1b2c9r26raa3vxjwwmbfqr3iw4f")))) (build-system python-build-system) (propagated-inputs - `(("python-docutils" ,python-docutils) - ("python-sphinx" ,python-sphinx) + `(("python-sphinx" ,python-sphinx) ("python-zope-interface" ,python-zope-interface))) (synopsis "Auto-generate Sphinx API docs from Zope interfaces") (description "This package defines an extension for the Sphinx documentation @@ -9464,14 +9081,10 @@ introspection of @code{zope.interface} instances in code.") (synopsis "Python PostgreSQL adapter") (description "psycopg2 is a thread-safe PostgreSQL adapter that implements DB-API 2.0. ") - (license license:lgpl3+) - (properties `((python2-variant . ,(delay python2-psycopg2)))))) + (license license:lgpl3+))) (define-public python2-psycopg2 - (package - (inherit (package-with-python2 - (strip-python2-variant python-psycopg2))) - (native-inputs `(("python2-setuptools" ,python2-setuptools))))) + (package-with-python2 python-psycopg2)) (define-public python-vobject (package @@ -9487,7 +9100,7 @@ introspection of @code{zope.interface} instances in code.") (arguments '(;; The test suite relies on some non-portable Windows interfaces. #:tests? #f)) - (inputs + (propagated-inputs `(("python-dateutil-2" ,python-dateutil-2) ("python-pyicu" ,python-pyicu))) (synopsis "Parse and generate vCard and vCalendar files") @@ -9497,25 +9110,21 @@ are supported and well tested. vCard 3.0 files are supported, and all data should be imported, but only a few components are understood in a sophisticated way.") (home-page "http://eventable.github.io/vobject/") - (license license:asl2.0) - (properties `((python2-variant . ,(delay python2-vobject)))))) + (license license:asl2.0))) (define-public python2-vobject - (package - (inherit (package-with-python2 - (strip-python2-variant python-vobject))) - (native-inputs `(("python2-setuptools" ,python2-setuptools))))) + (package-with-python2 python-vobject)) (define-public python-munkres (package (name "python-munkres") - (version "1.0.7") + (version "1.0.8") (source (origin (method url-fetch) (uri (pypi-uri "munkres" version)) (sha256 (base32 - "1i6nf45i0kkzdx6k70giybsqxz4dxsjbrkrfqgjd7znfkf25sjik")))) + "0mbspx4zv8id4x6pim6ybsa1xh96qwpbqj7skbqz4c9c9nf1lpqq")))) (build-system python-build-system) (arguments '(#:tests? #f)) ; no test suite @@ -9532,30 +9141,29 @@ useful for solving the Assignment Problem.") (define-public python-flask (package (name "python-flask") - (version "0.10.1") + (version "0.11.1") (source (origin (method url-fetch) (uri (pypi-uri "Flask" version)) (sha256 (base32 - "0wrkavjdjndknhp8ya8j850jq7a1cli4g5a93mg8nh1xz2gq50sc")))) + "03kbfll4sj3v5z7r31c7bhfpi11r1np076d4p1k2kg4yzcmkywdl")))) (build-system python-build-system) (propagated-inputs `(("python-itsdangerous" ,python-itsdangerous) ("python-jinja2" ,python-jinja2) ("python-werkzeug" ,python-werkzeug))) + (native-inputs + `(("python-click" ,python-click))) (home-page "https://github.com/mitsuhiko/flask/") (synopsis "Microframework based on Werkzeug, Jinja2 and good intentions") (description "Flask is a micro web framework based on the Werkzeug toolkit and Jinja2 template engine. It is called a micro framework because it does not presume or force a developer to use a particular tool or library.") - (license license:bsd-3) - (properties `((python2-variant . ,(delay python2-flask)))))) + (license license:bsd-3))) (define-public python2-flask - (package (inherit (package-with-python2 - (strip-python2-variant python-flask))) - (native-inputs `(("python2-setuptools" ,python2-setuptools))))) + (package-with-python2 python-flask)) (define-public python-cookies (package @@ -9577,15 +9185,10 @@ presume or force a developer to use a particular tool or library.") (description "A RFC 6265-compliant HTTP cookie parser and renderer in Python.") (home-page "https://gitlab.com/sashahart/cookies") - (license license:expat) - (properties `((python2-variant . ,(delay python2-cookies)))))) + (license license:expat))) (define-public python2-cookies - (let ((cookies (package-with-python2 - (strip-python2-variant python-cookies)))) - (package (inherit cookies) - (native-inputs `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs cookies)))))) + (package-with-python2 python-cookies)) (define-public python-responses (package @@ -9603,24 +9206,19 @@ Python.") ;; https://github.com/getsentry/responses/issues/38 #:tests? #f)) (native-inputs - `(("python-cookies" ,python-cookies) - ("python-mock" ,python-mock))) + `(("python-mock" ,python-mock))) (propagated-inputs `(("python-requests" ,python-requests) + ("python-cookies" ,python-cookies) ("python-six" ,python-six))) (home-page "https://github.com/getsentry/responses") (synopsis "Utility for mocking out the `requests` Python library") (description "A utility library for mocking out the `requests` Python library.") - (license license:asl2.0) - (properties `((python2-variant . ,(delay python2-responses)))))) + (license license:asl2.0))) (define-public python2-responses - (let ((responses (package-with-python2 - (strip-python2-variant python-responses)))) - (package (inherit responses) - (native-inputs `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs responses)))))) + (package-with-python2 python-responses)) (define-public python-whoosh (package @@ -9635,8 +9233,7 @@ library.") "10qsqdjpbc85fykc1vgcs8xwbgn4l2l52c8d83xf1q59pwyn79bw")))) (build-system python-build-system) (native-inputs - `(("python-setuptools" ,python-setuptools) - ("python-pytest" ,python-pytest))) + `(("python-pytest" ,python-pytest))) (home-page "http://bitbucket.org/mchaput/whoosh") (synopsis "Full text indexing, search, and spell checking library") (description @@ -9706,8 +9303,7 @@ anymore.") (arguments `(#:python ,python-2)) (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ("python2-six" ,python2-six))) + `(("python2-six" ,python2-six))) (home-page "http://pypi.python.org/pypi/pathlib2/") (synopsis "Object-oriented file system paths - backport of standard pathlib module") @@ -9731,13 +9327,13 @@ ambiguities (forward vs. backward slashes, etc.). (define-public python-jellyfish (package (name "python-jellyfish") - (version "0.5.3") + (version "0.5.6") (source (origin (method url-fetch) (uri (pypi-uri "jellyfish" version)) (sha256 (base32 - "12bxh8cy9xmvyrjz7aw159nd5pyvb645rkvw4r6bvm4xbvs8gd07")))) + "1j9rplb16ba2prjj6mip46z0w9pnhnqpwgiwi0x93vnas14rlyl8")))) (build-system python-build-system) (native-inputs `(("python-pytest" ,python-pytest))) @@ -9752,8 +9348,7 @@ encoding algorithms to do fuzzy string matching.") (let ((jellyfish (package-with-python2 (strip-python2-variant python-jellyfish)))) (package (inherit jellyfish) - (native-inputs `(("python2-setuptools" ,python2-setuptools) - ("python2-unicodecsv" ,python2-unicodecsv) + (native-inputs `(("python2-unicodecsv" ,python2-unicodecsv) ,@(package-native-inputs jellyfish)))))) (define-public python2-unicodecsv @@ -9775,8 +9370,7 @@ encoding algorithms to do fuzzy string matching.") `(;; It supports Python 3, but Python 3 can already do Unicode CSV. #:python ,python-2)) (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ("python2-unittest2" ,python2-unittest2))) + `(("python2-unittest2" ,python2-unittest2))) (home-page "https://github.com/jdunck/python-unicodecsv") (synopsis "Unicode CSV module for Python 2") (description "Unicodecsv is a drop-in replacement for Python 2.7's CSV @@ -9786,15 +9380,13 @@ module, adding support for Unicode strings.") (define-public python-rarfile (package (name "python-rarfile") - (version "2.7") + (version "2.8") (source (origin (method url-fetch) (uri (pypi-uri "rarfile" version)) (sha256 (base32 - "0d8n1dlpiz7av8dmbp0vclrwl9cnxizr4f2c9xvj1h5nvn480527")) - ;; https://github.com/markokr/rarfile/pull/17/ - (patches (search-patches "python-rarfile-fix-tests.patch")))) + "0qfad483kcbga0bn4qmcz953xjk16r52fahiy46zzn56v80y89ra")))) (build-system python-build-system) (arguments '(#:phases @@ -9864,8 +9456,6 @@ is made as zipfile like as possible.") port) (close-port port) #t)))))) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (inputs ;; python-magic needs to be able to find libmagic.so. `(("file" ,file))) @@ -9900,9 +9490,7 @@ the same purpose: to provide Python bindings for libmagic.") ;; s3cmd is written for python2 only and contains no tests. `(#:python ,python-2 #:tests? #f)) - (native-inputs - `(("python2-setuptools" ,python2-setuptools))) - (inputs + (propagated-inputs `(("python2-dateutil" ,python2-dateutil) ;; The python-file package also provides a magic.py module. ;; This is an unfortunate state of affairs; however, s3cmd @@ -9935,17 +9523,13 @@ CloudFront content delivery network.") "1pw0kmvc57sjmaxi6c54fqsnihqj6hvhc9y1vaz36axafzqam7bh")))) (build-system python-build-system) (native-inputs - `(("python-nose" ,python-nose) - ("python-setuptools" ,python-setuptools))) + `(("python-nose" ,python-nose))) (inputs `(("pkg-config" ,pkg-config))) (arguments `(;; Tests fail with "ValueError: _type_ 'v' not supported" on Python 3, ;; and on Python 2 they need the dl module deprecated since Python 2.6. #:tests? #f - ;; Prevent creation of the egg. This works around - ;; https://debbugs.gnu.org/cgi/bugreport.cgi?bug=20765 . - #:configure-flags '("--single-version-externally-managed" "--root=/") ;; Hard-code the path to pkg-config. #:phases (modify-phases %standard-phases @@ -9996,8 +9580,6 @@ development version of CPython that are not available in older releases.") (strip-python2-variant python-bz2file)))) (package (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools))) (arguments `(#:python ,python-2 #:phases @@ -10030,15 +9612,10 @@ development version of CPython that are not available in older releases.") "@code{python-future} is the missing compatibility layer between Python 2 and Python 3. It allows you to use a single, clean Python 3.x-compatible codebase to support both Python 2 and Python 3 with minimal overhead.") - (license license:expat) - (properties `((python2-variant . ,(delay python2-future)))))) + (license license:expat))) (define-public python2-future - (let ((base (package-with-python2 - (strip-python2-variant python-future)))) - (package - (inherit base) - (native-inputs `(("python2-setuptools" ,python2-setuptools)))))) + (package-with-python2 python-future)) (define-public python-cysignals (package @@ -10054,7 +9631,6 @@ to support both Python 2 and Python 3 with minimal overhead.") (build-system python-build-system) (native-inputs `(("python-cython" ,python-cython) - ("python-setuptools" ,python-setuptools) ("python-sphinx" ,python-sphinx))) (inputs `(("pari-gp" ,pari-gp))) @@ -10116,7 +9692,6 @@ respectively.") " line += ' -L" pcre "/lib" " -L " libgc "/lib'"))) #t)))))) - (native-inputs `(("python2-setuptools" ,python2-setuptools))) (inputs `(("pcre" ,pcre) ("libgc" ,libgc))) (home-page "https://shedskin.github.io/") @@ -10142,8 +9717,7 @@ Python. It generates C++ code and a Makefile.")) `(#:python ,python-2)) (build-system python-build-system) (native-inputs - `(("python2-unittest2" ,python2-unittest2) - ("python2-setuptools" ,python2-setuptools))) + `(("python2-unittest2" ,python2-unittest2))) (home-page "https://github.com/python-rope/rope") (synopsis "Refactoring library for Python") (description "Rope is a refactoring library for Python. It facilitates @@ -10164,8 +9738,6 @@ to occurences in strings and comments.") (base32 "0i283z1pivmir61z8kbiycigc94l61v33ygzkhczf1ifq7cppyds")))) (build-system python-build-system) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (home-page "https://github.com/ultrabug/py3status") (synopsis "Extensible i3status wrapper written in Python") (description "py3status is an i3status wrapper which extends i3status @@ -10197,7 +9769,6 @@ own code, responding to click events and updating clock every second.") (zero? (system* "py.test" "-vv" "tests" "README.rst"))))))) (native-inputs `(("python-pytest" ,python-pytest) - ("python-setuptools" ,python-setuptools) ("python-six" ,python-six))) (home-page "https://github.com/ionelmc/python-tblib") (synopsis "Traceback serialization library") @@ -10239,8 +9810,7 @@ multiple processes (imagine multiprocessing, billiard, futures, celery etc). (system* "2to3" "--no-diff" "-wn" "sqlparse" "tests")) (zero? (system* "py.test"))))))) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-setuptools" ,python-setuptools))) + `(("python-pytest" ,python-pytest))) (home-page "https://github.com/andialbrecht/sqlparse") (synopsis "Non-validating SQL parser") (description "Sqlparse is a non-validating SQL parser for Python. It @@ -10261,8 +9831,6 @@ provides support for parsing, splitting and formatting SQL statements.") (base32 "04h0m54dyqg49vyarq26mry6kbivnpl47rnmmrk9qn8wpfxviybr")))) (build-system python-build-system) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (home-page "https://greenlet.readthedocs.io/") (synopsis "Lightweight in-process concurrent programming") (description @@ -10299,8 +9867,7 @@ are synchronized with data exchanges on \"channels\".") (propagated-inputs `(("python-greenlet" ,python-greenlet))) (native-inputs - `(("python-setuptools" ,python-setuptools) - ("python-six" ,python-six))) + `(("python-six" ,python-six))) (inputs `(("c-ares" ,c-ares) ("libev" ,libev))) @@ -10325,8 +9892,6 @@ to provide a high-level synchronous API on top of the libev event loop.") (base32 "0ydxrp9myw1mvsz3qfzx5579y5llmqa82pxvqchgp5syczffi450")))) (build-system python-build-system) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (propagated-inputs `(("python-zope-interface" ,python-zope-interface))) (home-page "https://twistedmatrix.com/") @@ -10385,14 +9950,10 @@ network support library.") (synopsis "Python Lex & Yacc") (description "PLY is a @code{lex}/@code{yacc} implemented purely in Python. It uses LR parsing and does extensive error checking.") - (license license:bsd-3) - (properties `((python2-variant . ,(delay python2-ply)))))) + (license license:bsd-3))) (define-public python2-ply - (package - (inherit (package-with-python2 - (strip-python2-variant python-ply))) - (native-inputs `(("python2-setuptools" ,python2-setuptools))))) + (package-with-python2 python-ply)) (define-public python-tabulate (package @@ -10413,8 +9974,7 @@ It uses LR parsing and does extensive error checking.") (("from common") "from nose.tools"))))) (build-system python-build-system) (native-inputs - `(("python-setuptools" ,python-setuptools) - ;; For testing + `(;; For testing ("python-nose" ,python-nose))) (home-page "https://bitbucket.org/astanin/python-tabulate") (synopsis "Pretty-print tabular data") @@ -10439,8 +9999,6 @@ data in Python.") "10pb864if9qi2pq9lfb9m8f7z7ss6rml80gf1d9h64lap5crjnjj")))) (build-system python-build-system) (arguments '(#:tests? #f)) ; XXX: needs zookeeper - (native-inputs - `(("python-setuptools" ,python-setuptools))) (propagated-inputs `(("python-six" ,python-six))) (home-page "https://kazoo.readthedocs.org") @@ -10469,8 +10027,6 @@ programming errors.") "1id6sr159p6aa13bxcqyr9gln8sqg1l0ddzns5iws8kk5q1p5cfv")))) (build-system python-build-system) (arguments '(#:tests? #f)) ; XXX: needs zookeeper, kafka, etc. - (native-inputs - `(("python-setuptools" ,python-setuptools))) (propagated-inputs `(("python-gevent" ,python-gevent) ("python-kazoo" ,python-kazoo) @@ -10510,14 +10066,10 @@ wide-character codes. It is useful for those implementing a terminal emulator, or programs that carefully produce output to be interpreted by one. It is a Python implementation of the @code{wcwidth} and @code{wcswidth} C functions specified in POSIX.1-2001 and POSIX.1-2008.") - (license license:expat) - (properties `((python2-variant . ,(delay python2-wcwidth)))))) + (license license:expat))) (define-public python2-wcwidth - (package - (inherit (package-with-python2 - (strip-python2-variant python-wcwidth))) - (native-inputs `(("python2-setuptools" ,python2-setuptools))))) + (package-with-python2 python-wcwidth)) (define-public python2-jsonrpclib (package @@ -10532,8 +10084,6 @@ specified in POSIX.1-2001 and POSIX.1-2008.") (base32 "02vgirw2bcgvpcxhv5hf3yvvb4h5wzd1lpjx8na5psdmaffj6l3z")))) (build-system python-build-system) - (native-inputs - `(("python2-setuptools" ,python2-setuptools))) (arguments `(#:tests? #f #:python ,python-2)) @@ -10557,8 +10107,6 @@ etc.") (base32 "016kf3irrclpkpvcm7q0gmkfibq7jgy30a9v73pp42bq9h9a32bl")))) (build-system python-build-system) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (home-page "https://github.com/agoragames/chai") (synopsis "Mocking framework for Python") (description @@ -10581,8 +10129,7 @@ objects, patterned after the Mocha library for Ruby.") "1bz7hkdgpqcjs866y58z8jywpy7al0f4rxdr00bh2l5qddyw245j")))) (build-system python-build-system) (native-inputs - `(("python-setuptools" ,python-setuptools) - ;; For testing + `(;; For testing ("python-chai" ,python-chai) ("python-simplejson" ,python-simplejson))) (propagated-inputs @@ -10609,8 +10156,6 @@ datetime type.") (base32 "1jhnxgnw8y3mbzjssixh6qkc7a3afc4fygajhqrqalnilyvpzshq")))) (build-system python-build-system) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (home-page "http://github.com/jpvanhal/inflection") (synopsis "Python string transformation library") (description @@ -10633,8 +10178,6 @@ underscored string.") (base32 "1hz1x9blsbxya1y9nnhnwwdnqmakxi9mc0jkwj0rn6b1h44i0f86")))) (build-system python-build-system) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (home-page "http://github.com/toastdriven/pylev") (synopsis "Levenshtein distance implementation in Python") (description "Pure Python Levenshtein implementation, based off the @@ -10657,8 +10200,7 @@ Wikipedia code samples at "1k2dcl6mqpn5bljyl6w42rqyd9mb3y9kh2mg7m2x3kfjwvg0rpva")))) (build-system python-build-system) (native-inputs - `(("python-setuptools" ,python-setuptools) - ;; For testing + `(;; For testing ("python-mock" ,python-mock) ("python-pytest" ,python-pytest))) (propagated-inputs @@ -10685,8 +10227,6 @@ docstring and colored output.") (base32 "0s22aqqkdscyh8sjspyyax7qa1aiz8p4midrnyf39717fhfczm6x")))) (build-system python-build-system) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (home-page "https://github.com/ionelmc/python-lazy-object-proxy") (synopsis "Lazy object proxy for python") (description @@ -10710,8 +10250,6 @@ until the object is actually required, and caches the result of said call.") "0jr4v2pd90i6l1xxbss2m05psbjaxvyvvvpq44wycijpfgjqln8i")))) (build-system python-build-system) (arguments '(#:tests? #f)) ; XXX: requires internet access - (native-inputs - `(("python-setuptools" ,python-setuptools))) (home-page "http://www.dnspython.org") (synopsis "DNS toolkit for Python") (description @@ -10742,8 +10280,6 @@ It supports TSIG authenticated messages and EDNS0.") (substitute* "setup.py" (("dnspython3") "dnspython")) #t))))) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (propagated-inputs `(("python-dnspython" ,python-dnspython) ("python-idna" ,python-idna))) @@ -10767,8 +10303,6 @@ It supports TSIG authenticated messages and EDNS0.") (base32 "1jwg9z4rz51mcka1821rwgycsd0mcicyp1kiwjfa2kvg8bm9p2qd")))) (build-system python-build-system) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (home-page "https://github.com/hamstah/ukpostcodeparser") (synopsis "UK Postcode parser for Python") (description @@ -10791,8 +10325,7 @@ parsing UK postcodes.") "0vs0dkmg0dlaxf8w6q2i3k0i03gmp56ablldv7ci9x3nbadkn71g")))) (build-system python-build-system) (native-inputs - `(("python-setuptools" ,python-setuptools) - ;; For testing + `(;; For testing ("python-email-validator" ,python-email-validator) ("python-mock" ,python-mock) ("python-ukpostcodeparser" ,python-ukpostcodeparser))) @@ -10827,8 +10360,6 @@ addresses, and phone numbers.") (base32 "1f5m28vkh4ksq3d80d8mmd2z8wxvc3mgy2pmrv2751dm2xgznm4w")))) (build-system python-build-system) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (propagated-inputs `(("python-pyyaml" ,python-pyyaml))) (home-page "https://github.com/mk-fg/pretty-yaml") @@ -10852,8 +10383,6 @@ YAML-serialized data.") (base32 "0arc6njvs6i9v9hgvzk5m50296g7zy5m9d7pyb43vdsdgxrci5gy")))) (build-system python-build-system) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (home-page "https://flexmock.readthedocs.org") (synopsis "Testing library for Python") (description @@ -10876,8 +10405,6 @@ mocks, stubs and fakes.") "1li49irsqha17nrda4nsb48biyy0rarp9pphf0jpqwm5zr8hv569")))) (build-system python-build-system) (arguments '(#:tests? #f)) ; no tests - (native-inputs - `(("python-setuptools" ,python-setuptools))) (propagated-inputs `(("python-arrow" ,python-arrow) ("python-blinker" ,python-blinker) @@ -10918,9 +10445,10 @@ implementation for Python.") (build-system python-build-system) (arguments '(#:tests? #f)) ; The test suite uses some Windows-specific data types. - (inputs `(("python-wcwidth" ,python-wcwidth) - ("python-pygments" ,python-pygments))) - (native-inputs `(("python-six" ,python-six))) + (propagated-inputs + `(("python-wcwidth" ,python-wcwidth) + ("python-six" ,python-six) + ("python-pygments" ,python-pygments))) (home-page "https://github.com/jonathanslenders/python-prompt-toolkit") (synopsis "Library for building command line interfaces in Python") (description @@ -10929,16 +10457,10 @@ interfaces in Python. It's like GNU Readline but it also features syntax highlighting while typing, out-of-the-box multi-line input editing, advanced code completion, incremental search, support for Chinese double-width characters, mouse support, and auto suggestions.") - (license license:bsd-3) - (properties `((python2-variant . ,(delay python2-prompt-toolkit)))))) + (license license:bsd-3))) (define-public python2-prompt-toolkit - (let ((base (package-with-python2 (strip-python2-variant python-prompt-toolkit)))) - (package - (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-prompt-toolkit)) (define-public python-jedi (package @@ -10957,16 +10479,10 @@ characters, mouse support, and auto suggestions.") "Autocompletion for Python that can be used for text editors") (description "Jedi is an autocompletion tool for Python that can be used for text editors.") - (license license:expat) - (properties `((python2-variant . ,(delay python2-jedi)))))) + (license license:expat))) (define-public python2-jedi - (let ((base (package-with-python2 (strip-python2-variant python-jedi)))) - (package - (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-jedi)) (define-public ptpython (package @@ -10979,12 +10495,11 @@ characters, mouse support, and auto suggestions.") (base32 "1mmbiyzf0n8hm7z2a562x7w5cbl6jc0zsk6vp40q1z4cyblv1k13")))) (build-system python-build-system) - (inputs + (propagated-inputs `(("python-docopt" ,python-docopt) ("python-jedi" ,python-jedi) ("python-prompt-toolkit" ,python-prompt-toolkit) - ("python-pygments" ,python-pygments) - ("python-setuptools" ,python-setuptools))) + ("python-pygments" ,python-pygments))) (home-page "https://github.com/jonathanslenders/ptpython") (synopsis "Python Read-Eval-Print-Loop with nice IDE-like features") (description @@ -11024,7 +10539,7 @@ etc.") (native-inputs `(("python-requests-mock" ,python-requests-mock) ("python-mock" ,python-mock))) - (inputs + (propagated-inputs `(("python-oauthlib" ,python-oauthlib) ("python-requests" ,python-requests))) (home-page @@ -11034,15 +10549,10 @@ etc.") (description "Requests-OAuthlib uses the Python Requests and OAuthlib libraries to provide an easy-to-use Python interface for building OAuth1 and OAuth2 clients.") - (license license:isc) - (properties `((python2-variant . ,(delay python2-requests-oauthlib)))))) + (license license:isc))) (define-public python2-requests-oauthlib - (let ((base (package-with-python2 (strip-python2-variant python-requests-oauthlib)))) - (package - (inherit base) - (native-inputs `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-requests-oauthlib)) (define-public python-stem (package @@ -11066,7 +10576,7 @@ provide an easy-to-use Python interface for building OAuth1 and OAuth2 clients." `(("python-mock" ,python-mock) ("python-pep8" ,python-pep8) ("python-pyflakes" ,python-pyflakes))) - (inputs + (propagated-inputs `(("python-pycrypto" ,python-pycrypto))) (home-page "https://stem.torproject.org/") (synopsis @@ -11098,16 +10608,10 @@ relays publish about themselves.") (description "@code{pyserial} provide serial port bindings for Python. It supports different byte sizes, stop bits, parity and flow control with RTS/CTS and/or Xon/Xoff. The port is accessed in RAW mode.") - (license license:bsd-3) - (properties `((python2-variant . ,(delay python2-pyserial)))))) + (license license:bsd-3))) (define-public python2-pyserial - (let ((base (package-with-python2 (strip-python2-variant python-pyserial)))) - (package - (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-pyserial)) (define-public python-kivy (package @@ -11134,10 +10638,10 @@ and/or Xon/Xoff. The port is accessed in RAW mode.") "/include/SDL2")) #t))))) (native-inputs - `(("pkg-config" ,pkg-config))) + `(("pkg-config" ,pkg-config) + ("python-cython" ,python-cython))) (inputs - `(("python-cython" ,python-cython) - ("gstreamer" ,gstreamer) + `(("gstreamer" ,gstreamer) ("mesa" ,mesa) ("sdl-union" ,(sdl-union (list sdl2 sdl2-image sdl2-mixer sdl2-ttf))))) @@ -11184,7 +10688,7 @@ hardware-accelerated multitouch applications.") (base32 "1j4f51dxic39mdwf6alj7gd769wy6mhk916v031wjali51xkh3xb")))) (build-system python-build-system) - (inputs + (propagated-inputs `(("python-chardet" ,python-chardet) ("python-hypothesis" ,python-hypothesis))) (home-page "https://github.com/audreyr/binaryornot") @@ -11197,12 +10701,9 @@ binary or text.") (define-public python2-binaryornot (let ((base (package-with-python2 (strip-python2-variant python-binaryornot)))) (package (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base))) - (inputs + (propagated-inputs `(("python2-enum34" ,python2-enum34) - ,@(package-inputs base)))))) + ,@(package-propagated-inputs base)))))) (define-public python-nltk (package @@ -11225,15 +10726,10 @@ binary or text.") resources such as WordNet, along with a suite of text processing libraries for classification, tokenization, stemming, tagging, parsing, and semantic reasoning, wrappers for natural language processing libraries.") - (license license:asl2.0) - (properties `((python2-variant . ,(delay python2-nltk)))))) + (license license:asl2.0))) (define-public python2-nltk - (let ((base (package-with-python2 (strip-python2-variant python-nltk)))) - (package (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-nltk)) (define-public python-pymongo (package @@ -11246,20 +10742,15 @@ reasoning, wrappers for natural language processing libraries.") (base32 "07mra6w86wjqy4lx5fvimidjhhfzd562gfjn8grsnbv2q8pk0i9x")))) (build-system python-build-system) - (inputs + (propagated-inputs `(("python-certifi" ,python-certifi))) (home-page "http://github.com/mongodb/mongo-python-driver") (synopsis "Python driver for MongoDB") (description "Python driver for MongoDB.") - (license license:asl2.0) - (properties `((python2-variant . ,(delay python2-pymongo)))))) + (license license:asl2.0))) (define-public python2-pymongo - (let ((base (package-with-python2 (strip-python2-variant python-pymongo)))) - (package (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-pymongo)) (define-public python-sh (package @@ -11278,15 +10769,10 @@ reasoning, wrappers for natural language processing libraries.") (synopsis "Python subprocess interface") (description "Abstracts process invocation by providing a function interface for programs.") - (license license:expat) - (properties `((python2-variant . ,(delay python2-sh)))))) + (license license:expat))) (define-public python2-sh - (let ((base (package-with-python2 (strip-python2-variant python-sh)))) - (package (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-sh)) (define-public python-consul (package @@ -11301,8 +10787,9 @@ interface for programs.") "0rfyxcy4cr3x848vhx876ifalxd5ghq6l5x813m49h4vq2d4jiq8")))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest) - ("python-requests" ,python-requests) + `(("python-pytest" ,python-pytest))) + (propagated-inputs + `(("python-requests" ,python-requests) ("python-six" ,python-six))) (home-page "https://github.com/cablehead/python-consul") (synopsis "Python client for Consul") @@ -11312,11 +10799,7 @@ discovery, monitoring and configuration.") (license license:expat))) (define-public python2-consul - (let ((consul (package-with-python2 python-consul))) - (package (inherit consul) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs consul)))))) + (package-with-python2 python-consul)) (define-public python-schematics (package @@ -11332,7 +10815,7 @@ discovery, monitoring and configuration.") (base32 "19v1i69bf3bzarfxmbv0v6ivpcn758x3shvbiy9l2hy0lvqwnp6l")))) (build-system python-build-system) - (inputs + (propagated-inputs `(("python-six" ,python-six))) (arguments `(#:tests? #f)) ; requires a bunch of not very nice packages with fixed @@ -11340,15 +10823,10 @@ discovery, monitoring and configuration.") (home-page "https://github.com/schematics/schematics") (synopsis "Python Data Structures for Humans") (description "Python Data Structures for Humans.") - (license license:bsd-3) - (properties `((python2-variant . ,(delay python2-schematics)))))) + (license license:bsd-3))) (define-public python2-schematics - (let ((base (package-with-python2 (strip-python2-variant python-schematics)))) - (package (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-schematics)) (define-public python-publicsuffix (package @@ -11367,15 +10845,10 @@ discovery, monitoring and configuration.") (synopsis "Get suffix for a domain name") (description "Get a public suffix for a domain name using the Public Suffix List.") - (license license:expat) - (properties `((python2-variant . ,(delay python2-nltk)))))) + (license license:expat))) (define-public python2-publicsuffix - (let ((base (package-with-python2 (strip-python2-variant python-publicsuffix)))) - (package (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-publicsuffix)) (define-public python-publicsuffix2 (package @@ -11395,15 +10868,10 @@ List.") (synopsis "Get a public suffix for a domain name using the Public Suffix List") (description "Get a public suffix for a domain name using the Public Suffix List. Forked from and using the same API as the publicsuffix package.") - (license (list license:expat license:mpl2.0)) - (properties `((python2-variant . ,(delay python2-publicsuffix2)))))) + (license (list license:expat license:mpl2.0)))) (define-public python2-publicsuffix2 - (let ((base (package-with-python2 (strip-python2-variant python-publicsuffix2)))) - (package (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-publicsuffix2)) (define-public python-url (package @@ -11416,7 +10884,7 @@ List. Forked from and using the same API as the publicsuffix package.") (base32 "0v879yadcz9qxfl41ak6wkga1kimp9cflla9ddz03hjjvgkqy5ki")))) (build-system python-build-system) - (inputs + (propagated-inputs `(("python-publicsuffix" ,python-publicsuffix))) (native-inputs `(("python-coverage" ,python-coverage) @@ -11432,11 +10900,8 @@ List. Forked from and using the same API as the publicsuffix package.") (define-public python2-url (let ((base (package-with-python2 (strip-python2-variant python-url)))) (package (inherit base) - (inputs - `(("python2-publicsuffix" ,python2-publicsuffix))) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (propagated-inputs + `(("python2-publicsuffix" ,python2-publicsuffix)))))) (define-public python-freezegun (package @@ -11453,10 +10918,10 @@ List. Forked from and using the same API as the publicsuffix package.") (native-inputs `(("python-mock" ,python-mock) ("python-nose" ,python-nose) - ("python-coverage" ,python-coverage) + ("python-coverage" ,python-coverage))) + (propagated-inputs + `(("python-six" ,python-six) ("python-dateutil-2" ,python-dateutil-2))) - (inputs - `(("python-six" ,python-six))) (arguments `(#:phases (modify-phases %standard-phases ;; The tests are normally executed via `make test`, but the PyPi @@ -11472,11 +10937,8 @@ time by mocking the datetime module.") (license license:asl2.0))) (define-public python2-freezegun - (let ((base (package-with-python2 (strip-python2-variant python-freezegun)))) - (package (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-freezegun)) + (define-public python-odfpy (package @@ -11553,15 +11015,10 @@ Python to manipulate OpenDocument 1.2 files.") (synopsis "The httplib2 caching algorithms for use with requests") (description "CacheControl is a port of the caching algorithms in @code{httplib2} for use with @code{requests} session objects.") - (license license:asl2.0) - (properties `((python2-variant . ,(delay python2-cachecontrol)))))) + (license license:asl2.0))) (define-public python2-cachecontrol - (let ((base (package-with-python2 (strip-python2-variant python-cachecontrol)))) - (package (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-cachecontrol)) (define-public python-lit (package @@ -11580,16 +11037,10 @@ Python to manipulate OpenDocument 1.2 files.") (description "@code{lit} is a portable tool for executing LLVM and Clang style test suites, summarizing their results, and providing indication of failures.") - (license license:ncsa) - (properties `((python2-variant . ,(delay python2-lit)))))) + (license license:ncsa))) (define-public python2-lit - (let ((base (package-with-python2 (strip-python2-variant python-lit)))) - (package - (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-lit)) (define-public python-pytest-pep8 (package @@ -11603,10 +11054,7 @@ failures.") "06032agzhw1i9d9qlhfblnl3dw5hcyxhagn7b120zhrszbjzfbh3")))) (build-system python-build-system) (arguments - `(#:tests? #f ; Fails with recent pytest and pep8. See upstream issues #8 and #12. - ;; Prevent creation of the egg. This works around - ;; https://debbugs.gnu.org/cgi/bugreport.cgi?bug=20765 . - #:configure-flags '("--single-version-externally-managed" "--root=/"))) + `(#:tests? #f)) ; Fails with recent pytest and pep8. See upstream issues #8 and #12. (native-inputs `(("python-pytest" ,python-pytest))) (propagated-inputs @@ -11614,15 +11062,10 @@ failures.") (home-page "https://bitbucket.org/pytest-dev/pytest-pep8") (synopsis "Py.test plugin to check PEP8 requirements") (description "Pytest plugin for checking PEP8 compliance.") - (license license:expat) - (properties `((python2-variant . ,(delay python2-pytest-pep8)))))) + (license license:expat))) (define-public python2-pytest-pep8 - (let ((base (package-with-python2 (strip-python2-variant python-pytest-pep8)))) - (package (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-pytest-pep8)) (define-public python-pytest-flakes (package @@ -11636,14 +11079,14 @@ failures.") "0flag3n33kbhyjrhzmq990rvg4yb8hhhl0i48q9hw0ll89jp28lw")))) (build-system python-build-system) (arguments - `(;; Prevent creation of the egg. This works around - ;; https://debbugs.gnu.org/cgi/bugreport.cgi?bug=20765 . - #:configure-flags '("--single-version-externally-managed" "--root=/") - #:phases + `(#:phases (modify-phases %standard-phases (delete 'check) (add-after 'install 'check - (lambda _ ; It's easier to run tests after install. + (lambda* (#:key outputs inputs #:allow-other-keys) + ;; It's easier to run tests after install. + ;; Make installed package available for running the tests + (add-installed-pythonpath inputs outputs) (zero? (system* "py.test" "-vv"))))))) (native-inputs `(("python-coverage" ,python-coverage) @@ -11655,15 +11098,10 @@ failures.") (home-page "https://github.com/fschulze/pytest-flakes") (synopsis "Py.test plugin to check source code with pyflakes") (description "Pytest plugin for checking Python source code with pyflakes.") - (license license:expat) - (properties `((python2-variant . ,(delay python2-pytest-flakes)))))) + (license license:expat))) (define-public python2-pytest-flakes - (let ((base (package-with-python2 (strip-python2-variant python-pytest-flakes)))) - (package (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-pytest-flakes)) (define-public python-natsort (package @@ -11708,8 +11146,7 @@ functionality in the command line.") (let ((base (package-with-python2 (strip-python2-variant python-natsort)))) (package (inherit base) (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ("python2-pathlib" ,python2-pathlib) + `(("python2-pathlib" ,python2-pathlib) ("python2-mock" ,python2-mock) ("python2-enum34" ,python2-enum34) ,@(package-native-inputs base)))))) @@ -11726,7 +11163,7 @@ functionality in the command line.") (base32 "11jbq40g8alsbirnd4kiagznqg270247i0m8qhi48ldf2i5xppxg")))) (build-system python-build-system) - (inputs + (propagated-inputs `(("python-psutil" ,python-psutil))) (home-page "https://github.com/nicolargo/glances") @@ -11736,16 +11173,10 @@ functionality in the command line.") "Glances is a curses-based monitoring tool for a wide variety of platforms. Glances uses the PsUtil library to get information from your system. It monitors CPU, load, memory, network bandwidth, disk I/O, disk use, and more.") - (license license:lgpl3+) - (properties `((python2-variant . ,(delay python2-glances)))))) + (license license:lgpl3+))) (define-public python2-glances - (let ((base (package-with-python2 (strip-python2-variant python-glances)))) - (package - (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-glances)) (define-public python-graphql-core (package @@ -11772,7 +11203,7 @@ CPU, load, memory, network bandwidth, disk I/O, disk use, and more.") `(("python-gevent" ,python-gevent) ("python-mock" ,python-mock) ("python-pytest-mock" ,python-pytest-mock))) - (inputs + (propagated-inputs `(("python-promise" ,python-promise) ("python-six" ,python-six))) (home-page "https://github.com/graphql-python/graphql-core") @@ -11782,16 +11213,10 @@ CPU, load, memory, network bandwidth, disk I/O, disk use, and more.") runtime designed and used to request and deliver data to mobile and web apps. This library is a port of @url{https://github.com/graphql/graphql-js,graphql-js} to Python.") - (properties `((python2-variant . ,(delay python2-graphql-core)))) (license license:expat))) (define-public python2-graphql-core - (let ((base (package-with-python2 - (strip-python2-variant python-graphql-core)))) - (package (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-graphql-core)) (define-public python-graphql-relay (package @@ -11807,7 +11232,7 @@ to Python.") (build-system python-build-system) (native-inputs `(("python-pytest" ,python-pytest))) - (inputs + (propagated-inputs `(("python-graphql-core" ,python-graphql-core) ("python-promise" ,python-promise) ("python-six" ,python-six))) @@ -11819,16 +11244,10 @@ using the GraphQL Python reference implementation of a GraphQL server. It should be noted that the code is a exact port of the original @url{https://github.com/graphql/graphql-relay-js,graphql-relay js implementation} from Facebook.") - (properties `((python2-variant . ,(delay python2-graphql-relay)))) (license license:expat))) (define-public python2-graphql-relay - (let ((base (package-with-python2 - (strip-python2-variant python-graphql-relay)))) - (package (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-graphql-relay)) (define-public python-graphene (package @@ -11848,7 +11267,7 @@ from Facebook.") ("python-psycopg2" ,python-psycopg2) ("python-pytest-django" ,python-pytest-django) ("python-sqlalchemy-utils" ,python-sqlalchemy-utils))) - (inputs + (propagated-inputs `(("python-graphql-core" ,python-graphql-core) ("python-graphql-relay" ,python-graphql-relay) ("python-iso8601" ,python-iso8601) @@ -11868,8 +11287,7 @@ with an associated set of resolve methods that know how to fetch data.") (strip-python2-variant python-graphene)))) (package (inherit base) (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ("python2-sqlalchemy" ,python2-sqlalchemy) + `(("python2-sqlalchemy" ,python2-sqlalchemy) ,@(package-native-inputs base)))))) (define-public python-nautilus @@ -11885,23 +11303,18 @@ with an associated set of resolve methods that know how to fetch data.") "01hwzjc1zshk4vvxrcghm398fpy4jls66dyz06g07mrwqif8878p")))) (build-system python-build-system) (arguments `(#:tests? #f)) ; fails to import test modules - (native-inputs - `(("python-setuptools" ,python-setuptools))) - (inputs + (propagated-inputs `(("python-bcrypt" ,python-bcrypt) ("python-click" ,python-click) ("python-consul" ,python-consul) - ("python-graphql-core" ,python-graphql-core) - ("python-graphql-relay" ,python-graphql-relay) ("python-graphene" ,python-graphene) ("python-jinja2" ,python-jinja2) - ("python-nose2" ,python-nose2) ("python-peewee" ,python-peewee) ("python-pika" ,python-pika) - ("python-pycparser" ,python-pycparser) - ("python-requests" ,python-requests) ("python-tornado" ,python-tornado) ("python-wtforms" ,python-wtforms))) + (native-inputs + `(("python-nose2" ,python-nose2))) (home-page "https://github.com/AlecAivazis/nautilus") (synopsis "Library for creating microservice applications") (description @@ -11925,22 +11338,16 @@ focus on building massively scalable web applications.") (arguments '(;; Many tests fail because they require networking. #:tests? #f)) - (inputs + (propagated-inputs `(("python-requests" ,python-requests))) (home-page "https://github.com/sigmavirus24/betamax") (synopsis "Record HTTP interactions with python-requests") (description "Betamax will record your test suite's HTTP interactions and replay them during future tests. It is designed to work with python-requests.") - (license license:expat) - (properties `((python2-variant . ,(delay python2-betamax)))))) + (license license:expat))) (define-public python2-betamax - (let ((base (package-with-python2 (strip-python2-variant python-betamax)))) - (package - (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-betamax)) (define-public python-s3transfer (package @@ -11965,7 +11372,7 @@ replay them during future tests. It is designed to work with python-requests.") `(("python-docutils" ,python-docutils) ("python-mock" ,python-mock) ("python-nose" ,python-nose))) - (inputs + (propagated-inputs `(("python-botocore" ,python-botocore))) (synopsis "Amazon S3 Transfer Manager") (description "S3transfer is a Python library for managing Amazon S3 @@ -11980,7 +11387,6 @@ transfers.") (inherit base) (native-inputs `(("python2-futures" ,python2-futures) - ("python2-setuptools" ,python2-setuptools) ,@(package-native-inputs base)))))) (define-public python-setproctitle @@ -12080,16 +11486,10 @@ is used by PostgreSQL and the OpenSSH Server for example.") The schema format is based on the JSON Schema proposal (http://json-schema.org), so combined with json the library is also useful as a validator for JSON data.") - (license license:expat) - (properties `((python2-variant . ,(delay python2-validictory)))))) + (license license:expat))) (define-public python2-validictory - (let ((base (package-with-python2 - (strip-python2-variant python-validictory)))) - (package - (inherit base) - (native-inputs `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-validictory)) (define-public python-aniso8601 (package @@ -12243,15 +11643,10 @@ useful as a validator for JSON data.") (description "This package allows determination of image size from PNG, JPEG, JPEG2000 and GIF files in pure Python.") - (license license:expat) - (properties `((python2-variant . ,(delay python2-imagesize)))))) + (license license:expat))) (define-public python2-imagesize - (let ((base (package-with-python2 (strip-python2-variant python-imagesize)))) - (package - (inherit base) - (native-inputs `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs base)))))) + (package-with-python2 python-imagesize)) (define-public python-axolotl-curve25519 (package @@ -12272,8 +11667,6 @@ PNG, JPEG, JPEG2000 and GIF files in pure Python.") `(;; Prevent creation of the egg. This works around ;; https://debbugs.gnu.org/cgi/bugreport.cgi?bug=20765 #:configure-flags '("--root=/"))) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (home-page "https://github.com/tgalal/python-axolotl-curve25519") (synopsis "Python wrapper for curve25519 library") (description "This is a python wrapper for the curve25519 library @@ -12312,8 +11705,6 @@ python-axolotl.") ;; Prevent creation of the egg. This works around ;; https://debbugs.gnu.org/cgi/bugreport.cgi?bug=20765 #:configure-flags '("--root=/"))) - (native-inputs - `(("python-setuptools" ,python-setuptools))) (propagated-inputs `(("python-axolotl-curve25519" ,python-axolotl-curve25519) ("python-dateutil" ,python-dateutil) diff --git a/gnu/packages/qemu.scm b/gnu/packages/qemu.scm index 3c48b7a278..51c579a0ce 100644 --- a/gnu/packages/qemu.scm +++ b/gnu/packages/qemu.scm @@ -119,7 +119,7 @@ (let ((infodir (string-append out "/share/info"))) (for-each (lambda (info) (install-file info infodir)) - (find-files "." "\\.info$")) + (find-files "." "\\.info")) #t)))))) (add-before 'check 'make-gtester-verbose (lambda _ @@ -394,8 +394,9 @@ three libraries: (which "nosetests") "\""))) #t))))) (inputs - `(("libvirt" ,libvirt) - ("python-lxml" ,python-lxml))) + `(("libvirt" ,libvirt))) + (propagated-inputs + `(("python-lxml" ,python-lxml))) (native-inputs `(("pkg-config" ,pkg-config) ("python-nose" ,python-nose))) diff --git a/gnu/packages/rdf.scm b/gnu/packages/rdf.scm index d0a362c3a0..1dd23c28e3 100644 --- a/gnu/packages/rdf.scm +++ b/gnu/packages/rdf.scm @@ -315,11 +315,10 @@ ideal (e.g. in LV2 implementations or embedded applications).") (base32 "0kvaf332cqbi47rqzlpdx4mbkvw12mkrzkj8n9l19wk713d4py9w")))) (build-system python-build-system) - (inputs + (propagated-inputs `(("python-html5lib" ,python-html5lib) ("python-isodate" ,python-isodate) - ("python-pyparsing" ,python-pyparsing) - ("python-setuptools" ,python-setuptools))) + ("python-pyparsing" ,python-pyparsing))) (home-page "https://github.com/RDFLib/rdflib") (synopsis "Python RDF library") diff --git a/gnu/packages/spice.scm b/gnu/packages/spice.scm index c0e8d240cf..805f47a600 100644 --- a/gnu/packages/spice.scm +++ b/gnu/packages/spice.scm @@ -217,7 +217,7 @@ which allows users to view a desktop computing environment.") (inputs `(("cyrus-sasl" ,cyrus-sasl) ("glib" ,glib) - ("libjpeg" ,libjpeg) + ("libjpeg-turbo" ,libjpeg-turbo) ("lz4" ,lz4) ("opus" ,opus) ("zlib" ,zlib))) diff --git a/gnu/packages/ssh.scm b/gnu/packages/ssh.scm index 5fdeeb74a4..ea5ec811d1 100644 --- a/gnu/packages/ssh.scm +++ b/gnu/packages/ssh.scm @@ -204,24 +204,24 @@ Additionally, various channel-specific options can be negotiated.") (define-public guile-ssh (package (name "guile-ssh") - (version "0.10.1") + (version "0.10.2") + (home-page "https://github.com/artyom-poptsov/guile-ssh") (source (origin ;; ftp://memory-heap.org/software/guile-ssh/guile-ssh-VERSION.tar.gz ;; exists, but the server appears to be too slow and unreliable. - (method git-fetch) - (uri (git-reference - (url "https://github.com/artyom-poptsov/libguile-ssh.git") - (commit (string-append "v" version)))) - (file-name (string-append name "-" version "-checkout")) + ;; Also, using this URL allows the GitHub updater to work. + (method url-fetch) + (uri (string-append home-page "/archive/v" + version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) (sha256 (base32 - "0ky77kr7rnkhbq938bir61mlr8b86lfjcjjb1bxx1y1fhimsiz72")))) + "0pkiq3fm15pr4w1r420rrwwfmi4jz492r6l6vzjk6v73xlyfyfl3")))) (build-system gnu-build-system) (arguments '(#:phases (modify-phases %standard-phases (add-after 'unpack 'autoreconf (lambda* (#:key inputs #:allow-other-keys) - (chmod "doc/version.texi" #o777) ;make it writable (zero? (system* "autoreconf" "-vfi")))) (add-before 'build 'fix-libguile-ssh-file-name (lambda* (#:key outputs #:allow-other-keys) @@ -255,7 +255,6 @@ Additionally, various channel-specific options can be negotiated.") "Guile-SSH is a library that provides access to the SSH protocol for programs written in GNU Guile interpreter. It is a wrapper to the underlying libssh library.") - (home-page "https://github.com/artyom-poptsov/libguile-ssh") (license license:gpl3+))) (define-public corkscrew diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 700a8957cc..36f1889efa 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -1394,13 +1394,7 @@ and fast file reading.") (arguments `(#:phases (modify-phases %standard-phases - (replace 'check (lambda _ (zero? (system* "nosetests" "-v")))) - (add-after 'unpack 'prevent-generation-of-egg-archive - (lambda _ - (substitute* "setup.py" - (("from setuptools import setup") - "from distutils.core import setup")) - #t))))) + (replace 'check (lambda _ (zero? (system* "nosetests" "-v"))))))) (propagated-inputs `(("python-numpy" ,python-numpy) ("python-scipy" ,python-scipy) @@ -1416,15 +1410,10 @@ building design matrices.") ;; The majority of the code is distributed under BSD-2. The module ;; patsy.compat contains code derived from the Python standard library, ;; and is covered by the PSFL. - (license (list license:bsd-2 license:psfl)) - (properties `((python2-variant . ,(delay python2-patsy)))))) + (license (list license:bsd-2 license:psfl)))) (define-public python2-patsy - (let ((patsy (package-with-python2 (strip-python2-variant python-patsy)))) - (package (inherit patsy) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs patsy)))))) + (package-with-python2 python-patsy)) (define-public python-statsmodels (package @@ -1455,11 +1444,13 @@ building design matrices.") line))) #t)) (add-after 'install 'check - (lambda _ - (with-directory-excursion "/tmp" - (zero? (system* "nosetests" - "--stop" - "-v" "statsmodels")))))))) + (lambda* (#:key inputs outputs #:allow-other-keys) + ;; Make installed package available for running the tests + (add-installed-pythonpath inputs outputs) + (with-directory-excursion "/tmp" + (zero? (system* "nosetests" + "--stop" + "-v" "statsmodels")))))))) (propagated-inputs `(("python-numpy" ,python-numpy) ("python-scipy" ,python-scipy) @@ -1487,10 +1478,7 @@ inference for statistical models.") ("python2-scipy" ,python2-scipy) ("python2-pandas" ,python2-pandas) ("python2-patsy" ,python2-patsy) - ("python2-matplotlib" ,python2-matplotlib))) - (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ,@(package-native-inputs stats)))))) + ("python2-matplotlib" ,python2-matplotlib)))))) (define-public r-coda (package @@ -3272,6 +3260,128 @@ noncentral hypergeometric distribution (also called extended hypergeometric distribution).") (license license:gpl3+))) +(define-public r-rematch + (package + (name "r-rematch") + (version "1.0.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "rematch" version)) + (sha256 + (base32 + "0y3mshvpvz9csmq8hk8jbabx4nxlv5sckvfzvm6920ndg34xw2d4")))) + (build-system r-build-system) + (home-page "https://github.com/MangoTheCat/rematch") + (synopsis "Match regular expressions with a nicer API") + (description + "This package provides a small wrapper on @code{regexpr} to extract the +matches and captured groups from the match of a regular expression to a +character vector.") + (license license:expat))) + +(define-public r-cellranger + (package + (name "r-cellranger") + (version "1.1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "cellranger" version)) + (sha256 + (base32 + "16fgi3annn34c3cxi0pxf62mmmmxi21hp0zzlv7bkfsjqy4g4f2x")))) + (build-system r-build-system) + (propagated-inputs + `(("r-rematch" ,r-rematch) + ("r-tibble" ,r-tibble))) + (home-page "https://github.com/rsheets/cellranger") + (synopsis "Translate spreadsheet cell ranges to rows and columns") + (description + "This package provides helper functions to work with spreadsheets and the +@code{A1:D10} style of cell range specification.") + (license license:expat))) + +(define-public r-googlesheets + (package + (name "r-googlesheets") + (version "0.2.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "googlesheets" version)) + (sha256 + (base32 + "0ps13h1cv7fj5dh8s4nvwi64wnnyqdsadcaa4iizq1c5s615cwk3")))) + (build-system r-build-system) + (propagated-inputs + `(("r-cellranger" ,r-cellranger) + ("r-dplyr" ,r-dplyr) + ("r-httr" ,r-httr) + ("r-jsonlite" ,r-jsonlite) + ("r-purrr" ,r-purrr) + ("r-readr" ,r-readr) + ("r-stringr" ,r-stringr) + ("r-tidyr" ,r-tidyr) + ("r-xml2" ,r-xml2))) + (home-page "https://github.com/jennybc/googlesheets") + (synopsis "Manage Google spreadsheets from R") + (description "This package provides tools to interact with Google Sheets +from within R.") + (license license:expat))) + +(define-public r-spams + (package + (name "r-spams") + (version "2.5-svn2014-07-04") + (source + (origin + (method url-fetch) + (uri (string-append "https://gforge.inria.fr/frs/download.php/33815/" + "spams-R-v" version ".tar.gz")) + (sha256 + (base32 + "1k459jg9a334slkw31w63l4d39xszjzsng7dv5j1mp78zifz7hvx")))) + (build-system r-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'chdir + (lambda _ (chdir "spams") #t)) + ;; Since R 3.3.0 including R headers inside of an extern "C" block + ;; causes C headers to be included, which results in a lot of + ;; duplicate definitions. This can be avoided by defining + ;; NO_C_HEADERS before including the R headers. + (add-after 'chdir 'patch-use-of-R-headers + (lambda _ + (substitute* "src/spams.cpp" + (("#include <R.h>" line) + (string-append "#define NO_C_HEADERS\n" line))) + #t)) + ;; This looks like a syntax error. + (add-after 'chdir 'patch-isnan + (lambda _ + (substitute* '"src/spams/linalg/linalg.h" + (("if isnan\\(lambda\\) \\{") + "if (isnan(lambda)) {")) + #t))))) + (home-page "http://spams-devel.gforge.inria.fr") + (synopsis "Toolbox for solving sparse estimation problems") + (description "SPAMS (SPArse Modeling Software) is an optimization toolbox +for solving various sparse estimation problems. It includes tools for the +following problems: + +@enumerate +@item Dictionary learning and matrix factorization (NMF, sparse @dfn{principle + component analysis} (PCA), ...) +@item Solving sparse decomposition problems with LARS, coordinate descent, + OMP, SOMP, proximal methods +@item Solving structured sparse decomposition problems (l1/l2, l1/linf, sparse + group lasso, tree-structured regularization, structured sparsity with + overlapping groups,...). +@end enumerate\n") + (license license:gpl3+))) + (define-public r-rpart (package (name "r-rpart") @@ -3375,6 +3485,224 @@ conversion of R objects to LaTeX code, and recoding variables.") framework, with additional code inspection and report generation tools.") (license license:gpl2+))) +(define-public r-dynamictreecut + (package + (name "r-dynamictreecut") + (version "1.63-1") + (source + (origin + (method url-fetch) + (uri (cran-uri "dynamicTreeCut" version)) + (sha256 + (base32 + "1fadbql7g5r2vvlkr89nlrjxwp4yx4xrdqmv077qvmnx9vv0f4w3")))) + (properties `((upstream-name . "dynamicTreeCut"))) + (build-system r-build-system) + (home-page + "http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/BranchCutting/") + (synopsis "Detect clusters in hierarchical clustering dendrograms") + (description + "This package contains methods for the detection of clusters in +hierarchical clustering dendrograms.") + (license license:gpl2+))) + +(define-public r-preprocesscore + (package + (name "r-preprocesscore") + (version "1.36.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "preprocessCore" version)) + (sha256 + (base32 + "1n8y12q7145f385gm2k3c6y3vwvin7jlb47la4mnl7mar6pq9kmp")))) + (properties + `((upstream-name . "preprocessCore"))) + (build-system r-build-system) + (home-page "https://github.com/bmbolstad/preprocessCore") + (synopsis "Collection of pre-processing functions") + (description + "This package provides a library of core pre-processing and normalization +routines.") + (license license:lgpl2.0+))) + +(define-public r-fastcluster + (package + (name "r-fastcluster") + (version "1.1.20") + (source + (origin + (method url-fetch) + (uri (cran-uri "fastcluster" version)) + (sha256 + (base32 + "0rlbxhh894znf10x0xgkv9dzpibgq9jw5aqpgviccdnxc2c5hwid")))) + (build-system r-build-system) + (home-page "http://danifold.net/fastcluster.html") + (synopsis "Fast hierarchical clustering routines") + (description + "This package implements fast hierarchical, agglomerative clustering +routines. Part of the functionality is designed as drop-in replacement for +existing routines: @code{linkage()} in the SciPy package +@code{scipy.cluster.hierarchy}, @code{hclust()} in R's @code{stats} package, +and the @code{flashClust} package. It provides the same functionality with +the benefit of a much faster implementation. Moreover, there are +memory-saving routines for clustering of vector data, which go beyond what the +existing packages provide.") + (license license:bsd-2))) + +(define-public r-sfsmisc + (package + (name "r-sfsmisc") + (version "1.1-0") + (source + (origin + (method url-fetch) + (uri (cran-uri "sfsmisc" version)) + (sha256 + (base32 + "0580piv4n1nispl3pa8nfjjfnb8iwaqky2dzdy0aqnxrxgrhqhvz")))) + (build-system r-build-system) + (home-page "http://cran.r-project.org/web/packages/sfsmisc") + (synopsis "Utilities from \"Seminar fuer Statistik\" ETH Zurich") + (description + "This package provides useful utilities from Seminar fuer Statistik ETH +Zurich, including many that are related to graphics.") + (license license:gpl2+))) + +(define-public r-gtools + (package + (name "r-gtools") + (version "3.5.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "gtools" version)) + (sha256 + (base32 + "1xknwk9xlsj027pg0nwiizigcrsc84hdrig0jn0cgcyxj8dabdl6")))) + (build-system r-build-system) + (home-page "http://cran.r-project.org/web/packages/gtools") + (synopsis "Various R programming tools") + (description + "This package contains a collection of various functions to assist in R +programming, such as tools to assist in developing, updating, and maintaining +R and R packages, calculating the logit and inverse logit transformations, +tests for whether a value is missing, empty or contains only @code{NA} and +@code{NULL} values, and many more.") + (license license:gpl2))) + +(define-public r-gdata + (package + (name "r-gdata") + (version "2.17.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "gdata" version)) + (sha256 + (base32 + "0kiy3jbcszlpmarg311spdsfi5pn89wgy742dxsbzxk8907fr5w0")))) + (build-system r-build-system) + (inputs + `(("perl" ,perl))) + (propagated-inputs + `(("r-gtools" ,r-gtools))) + (home-page "http://cran.r-project.org/web/packages/gdata") + (synopsis "Various R programming tools for data manipulation") + (description + "This package provides various R programming tools for data manipulation, +including: + +@itemize +@item medical unit conversions +@item combining objects +@item character vector operations +@item factor manipulation +@item obtaining information about R objects +@item manipulating MS-Excel formatted files +@item generating fixed-width format files +@item extricating components of date and time objects +@item operations on columns of data frames +@item matrix operations +@item operations on vectors and data frames +@item value of last evaluated expression +@item wrapper for @code{sample} that ensures consistent behavior for + both scalar and vector arguments +@end itemize\n") + (license license:gpl2+))) + +(define-public r-gplots + (package + (name "r-gplots") + (version "3.0.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "gplots" version)) + (sha256 + (base32 + "02nb8n3s7c1zxq2s7ycaq2ys72y7mzirxrwj954h6gdc4x1zhg9l")))) + (build-system r-build-system) + (propagated-inputs + `(("r-catools" ,r-catools) + ("r-gdata" ,r-gdata) + ("r-gtools" ,r-gtools) + ("r-kernsmooth" ,r-kernsmooth))) + (home-page "http://cran.r-project.org/web/packages/gplots") + (synopsis "Various R programming tools for plotting data") + (description + "This package provides various R programming tools for plotting data, +including: + +@itemize +@item calculating and plotting locally smoothed summary function +@item enhanced versions of standard plots +@item manipulating colors +@item calculating and plotting two-dimensional data summaries +@item enhanced regression diagnostic plots +@item formula-enabled interface to @code{stats::lowess} function +@item displaying textual data in plots +@item baloon plots +@item plotting \"Venn\" diagrams +@item displaying Open-Office style plots +@item plotting multiple data on same region, with separate axes +@item plotting means and confidence intervals +@item spacing points in an x-y plot so they don't overlap +@end itemize\n") + (license license:gpl2+))) + +(define-public r-rocr + (package + (name "r-rocr") + (version "1.0-7") + (source + (origin + (method url-fetch) + (uri (cran-uri "ROCR" version)) + (sha256 + (base32 + "1jay8cm7lgq56i967vm5c2hgaxqkphfpip0gn941li3yhh7p3vz7")))) + (properties `((upstream-name . "ROCR"))) + (build-system r-build-system) + (propagated-inputs + `(("r-gplots" ,r-gplots))) + (home-page "http://rocr.bioinf.mpi-sb.mpg.de/") + (synopsis "Visualizing the performance of scoring classifiers") + (description + "ROCR is a flexible tool for creating cutoff-parameterized 2D performance +curves by freely combining two from over 25 performance measures (new +performance measures can be added using a standard interface). Curves from +different cross-validation or bootstrapping runs can be averaged by different +methods, and standard deviations, standard errors or box plots can be used to +visualize the variability across the runs. The parameterization can be +visualized by printing cutoff values at the corresponding curve positions, or +by coloring the curve according to cutoff. All components of a performance +plot can be quickly adjusted using a flexible parameter dispatching +mechanism.") + (license license:gpl2+))) + (define-public r-kernsmooth (package (name "r-kernsmooth") diff --git a/gnu/packages/telephony.scm b/gnu/packages/telephony.scm index 3d5e58ec2d..6597d26096 100644 --- a/gnu/packages/telephony.scm +++ b/gnu/packages/telephony.scm @@ -5,6 +5,7 @@ ;;; Copyright © 2015 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016 Lukas Gradl <lgradl@openmailbox.org> ;;; Copyright © 2016 Francesco Frassinelli <fraph24@gmail.com> +;;; Copyright © 2016 ng0 <ng0@libertad.pw> ;;; ;;; This file is part of GNU Guix. ;;; @@ -24,13 +25,20 @@ (define-module (gnu packages telephony) #:use-module (gnu packages) #:use-module (gnu packages autotools) + #:use-module (gnu packages avahi) + #:use-module (gnu packages boost) + #:use-module (gnu packages protobuf) #:use-module (gnu packages gnupg) #:use-module (gnu packages linux) #:use-module (gnu packages multiprecision) #:use-module (gnu packages ncurses) #:use-module (gnu packages pkg-config) + #:use-module (gnu packages pulseaudio) + #:use-module (gnu packages qt) + #:use-module (gnu packages speech) #:use-module (gnu packages tls) #:use-module (gnu packages xiph) + #:use-module (gnu packages xorg) #:use-module ((guix licenses) #:prefix license:) #:use-module (guix packages) #:use-module (guix download) @@ -287,3 +295,107 @@ lists. All you need to join an existing conference is the host name or IP address of one of the participants.") (home-page "http://holdenc.altervista.org/seren/") (license license:gpl3+))) + +(define-public mumble + (package + (name "mumble") + (version "1.2.17") + (source (origin + (method url-fetch) + (uri (string-append "https://mumble.info/snapshot/" + name "-" version ".tar.gz")) + (sha256 + (base32 + "176br3b0pv5sz3zvgzsz9rxr3n79irlm902h7n1wh4f6vbph2dhw")) + (modules '((guix build utils))) + (snippet + `(begin + ;; Remove bundled software. + (for-each delete-file-recursively '("3rdparty" + "speex" + "speexbuild" + "opus-build" + "opus-src" + "sbcelt-helper-build" + "sbcelt-lib-build" + "sbcelt-src")) + ;; TODO: Celt is still bundled. It has been merged into Opus + ;; and will be removed after 1.3.0. + ;; https://github.com/mumble-voip/mumble/issues/1999 + #t)))) + (build-system gnu-build-system) + (arguments + `(#:tests? #f ; no "check" target + #:phases + (modify-phases %standard-phases + (replace 'configure + (lambda* (#:key outputs #:allow-other-keys) + (zero? (system* "qmake" "main.pro" "-recursive" + (string-append "CONFIG+=" + (string-join + (list "no-update" + "no-server" + "no-embed-qt-translations" + "no-bundled-speex" + "pch" + "no-bundled-opus" + "no-celt" + "no-alsa" + "no-oss" + "no-portaudio" + "speechd" + "no-g15" + "no-bonjour" + "release"))) + (string-append "DEFINES+=" + "PLUGIN_PATH=" + (assoc-ref outputs "out") + "/lib/mumble"))))) + (add-before 'configure 'fix-libspeechd-include + (lambda _ + (substitute* "src/mumble/TextToSpeech_unix.cpp" + (("libspeechd.h") "speech-dispatcher/libspeechd.h")))) + (replace 'install ; install phase does not exist + (lambda* (#:key inputs outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (bin (string-append out "/bin")) + (services (string-append out "/share/services")) + (applications (string-append out "/share/applications")) + (icons (string-append out "/share/icons/hicolor/scalable/apps")) + (man (string-append out "/share/man/man1")) + (lib (string-append out "/lib/mumble"))) + (install-file "release/mumble" bin) + (install-file "scripts/mumble-overlay" bin) + (install-file "scripts/mumble.protocol" services) + (install-file "scripts/mumble.desktop" applications) + (install-file "icons/mumble.svg" icons) + (install-file "man/mumble-overlay.1" man) + (install-file "man/mumble.1" man) + (for-each (lambda (file) (install-file file lib)) + (find-files "." "\\.so\\.")) + (for-each (lambda (file) (install-file file lib)) + (find-files "release/plugins" "\\.so$")))))))) + (inputs + `(("avahi" ,avahi) + ("protobuf" ,protobuf) + ("openssl" ,openssl) + ("libsndfile" ,libsndfile) + ("boost" ,boost) + ("opus" ,opus) + ("speex" ,speex) + ("speech-dispatcher" ,speech-dispatcher) + ("libx11" ,libx11) + ("libxi" ,libxi) + ("qt-4" ,qt-4) + ("alsa-lib" ,alsa-lib) + ("pulseaudio" ,pulseaudio))) + (native-inputs + `(("pkg-config" ,pkg-config))) + (synopsis "Low-latency, high quality voice chat software") + (description + "Mumble is an low-latency, high quality voice chat +software primarily intended for use while gaming.") + (home-page "https://wiki.mumble.info/wiki/Main_Page") + (license (list license:bsd-3 + ;; The bundled celt is bsd-2. Remove after 1.3.0. + license:bsd-2)))) diff --git a/gnu/packages/terminals.scm b/gnu/packages/terminals.scm index 97dd0a82bd..e1076c7c60 100644 --- a/gnu/packages/terminals.scm +++ b/gnu/packages/terminals.scm @@ -161,8 +161,7 @@ insert mode and command mode where keybindings have different functions.") (("'tput'") (string-append "'" ncurses "/bin/tput'")))) #t))))) - (inputs `(("ncurses" ,ncurses) - ("python-setuptools" ,python-setuptools))) + (inputs `(("ncurses" ,ncurses))) (home-page "https://asciinema.org") (synopsis "Terminal session recorder") (description diff --git a/gnu/packages/tex.scm b/gnu/packages/tex.scm index 9186e4693a..7c84ed7194 100644 --- a/gnu/packages/tex.scm +++ b/gnu/packages/tex.scm @@ -6,6 +6,7 @@ ;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016 Federico Beffa <beffa@fbengineering.ch> ;;; Copyright © 2016 Thomas Danckaert <post@thomasdanckaert.be> +;;; Copyright © 2016 Ricardo Wurmus <rekado@elephly.net> ;;; ;;; This file is part of GNU Guix. ;;; @@ -27,6 +28,7 @@ #:use-module (guix packages) #:use-module (guix download) #:use-module (guix build-system gnu) + #:use-module (guix build-system perl) #:use-module (guix build-system trivial) #:use-module (guix utils) #:use-module (guix git-download) @@ -50,6 +52,8 @@ #:use-module (gnu packages ruby) #:use-module (gnu packages shells) #:use-module (gnu packages base) + #:use-module (gnu packages web) + #:use-module (gnu packages xml) #:use-module (gnu packages xorg) #:use-module (gnu packages xdisorg) #:use-module (gnu packages zip) @@ -382,6 +386,154 @@ world. This package contains a small working part of the TeX Live distribution."))) +(define-public perl-text-bibtex + (package + (name "perl-text-bibtex") + (version "0.77") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://cpan/authors/id/A/AM/AMBS/Text-BibTeX-" + version ".tar.gz")) + (sha256 + (base32 + "0kkfx8skk763pivz6h2ffy2zdp1lvy6d5sz0kjaj0mdbjffvnnb4")))) + (build-system perl-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'add-output-directory-to-rpath + (lambda* (#:key outputs #:allow-other-keys) + (substitute* "inc/MyBuilder.pm" + (("-Lbtparse" line) + (string-append "-Wl,-rpath=" + (assoc-ref outputs "out") "/lib " line))) + #t)) + (add-after 'unpack 'install-libraries-to-/lib + (lambda* (#:key outputs #:allow-other-keys) + (substitute* "Build.PL" + (("lib64") "lib")) + #t))))) + (native-inputs + `(("perl-capture-tiny" ,perl-capture-tiny) + ("perl-config-autoconf" ,perl-config-autoconf) + ("perl-extutils-libbuilder" ,perl-extutils-libbuilder) + ("perl-module-build" ,perl-module-build))) + (home-page "http://search.cpan.org/dist/Text-BibTeX") + (synopsis "Interface to read and parse BibTeX files") + (description "@code{Text::BibTeX} is a Perl library for reading, parsing, +and processing BibTeX files. @code{Text::BibTeX} gives you access to the data +at many different levels: you may work with BibTeX entries as simple field to +string mappings, or get at the original form of the data as a list of simple +values (strings, macros, or numbers) pasted together.") + (license (package-license perl)))) + +(define-public biber + (package + (name "biber-next") + (version "2.6") + (source (origin + (method url-fetch) + (uri (string-append "https://github.com/plk/biber/archive/v" + version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "158smzgjhjvyabdv97si5q88zjj5l8j1zbfnddvzy6fkpfhskgkp")))) + (build-system perl-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'install 'wrap-programs + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (perl5lib (getenv "PERL5LIB"))) + (wrap-program (string-append out "/bin/biber") + `("PERL5LIB" ":" prefix + (,(string-append perl5lib ":" out + "/lib/perl5/site_perl"))))) + #t))))) + (inputs + `(("perl-autovivification" ,perl-autovivification) + ("perl-class-accessor" ,perl-class-accessor) + ("perl-data-dump" ,perl-data-dump) + ("perl-data-compare" ,perl-data-compare) + ("perl-data-uniqid" ,perl-data-uniqid) + ("perl-datetime-format-builder" ,perl-datetime-format-builder) + ("perl-datetime-calendar-julian" ,perl-datetime-calendar-julian) + ("perl-file-slurp" ,perl-file-slurp) + ("perl-ipc-cmd" ,perl-ipc-cmd) + ("perl-ipc-run3" ,perl-ipc-run3) + ("perl-list-allutils" ,perl-list-allutils) + ("perl-list-moreutils" ,perl-list-moreutils) + ("perl-mozilla-ca" ,perl-mozilla-ca) + ("perl-regexp-common" ,perl-regexp-common) + ("perl-log-log4perl" ,perl-log-log4perl) + ;; We cannot use perl-unicode-collate here, because otherwise the + ;; hardcoded hashes in the tests would differ. See + ;; https://mail-archive.com/debian-bugs-dist@lists.debian.org/msg1469249.html + ;;("perl-unicode-collate" ,perl-unicode-collate) + ("perl-unicode-normalize" ,perl-unicode-normalize) + ("perl-unicode-linebreak" ,perl-unicode-linebreak) + ("perl-encode-eucjpascii" ,perl-encode-eucjpascii) + ("perl-encode-jis2k" ,perl-encode-jis2k) + ("perl-encode-hanextra" ,perl-encode-hanextra) + ("perl-xml-libxml" ,perl-xml-libxml) + ("perl-xml-libxml-simple" ,perl-xml-libxml-simple) + ("perl-xml-libxslt" ,perl-xml-libxslt) + ("perl-xml-writer" ,perl-xml-writer) + ("perl-sort-key" ,perl-sort-key) + ("perl-text-csv" ,perl-text-csv) + ("perl-text-csv-xs" ,perl-text-csv-xs) + ("perl-text-roman" ,perl-text-roman) + ("perl-uri" ,perl-uri) + ("perl-text-bibtex" ,perl-text-bibtex) + ("perl-libwww" ,perl-libwww) + ("perl-lwp-protocol-https" ,perl-lwp-protocol-https) + ("perl-business-isbn" ,perl-business-isbn) + ("perl-business-issn" ,perl-business-issn) + ("perl-business-ismn" ,perl-business-ismn) + ("perl-lingua-translit" ,perl-lingua-translit))) + (native-inputs + `(("perl-config-autoconf" ,perl-config-autoconf) + ("perl-extutils-libbuilder" ,perl-extutils-libbuilder) + ("perl-module-build" ,perl-module-build) + ;; for tests + ("perl-file-which" ,perl-file-which) + ("perl-test-more" ,perl-test-most) ; FIXME: "more" would be sufficient + ("perl-test-differences" ,perl-test-differences))) + (home-page "http://biblatex-biber.sourceforge.net/") + (synopsis "Backend for the BibLaTeX citation management tool") + (description "Biber is a BibTeX replacement for users of biblatex. Among +other things it comes with full Unicode support.") + (license license:artistic2.0))) + +;; Our version of texlive comes with biblatex 3.4, which is only compatible +;; with biber 2.5 according to the compatibility matrix in the biber +;; documentation. +(define-public biber-2.5 + (package (inherit biber) + (name "biber") + (version "2.5") + (source (origin + (method url-fetch) + (uri (string-append "https://github.com/plk/biber/archive/v" + version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "163sd343wkrzwnvj2003m2j0kz517jmjr4savw6f8bjxhj8fdrqv")))) + (arguments + (substitute-keyword-arguments (package-arguments biber) + ((#:phases phases) + `(modify-phases ,phases + (add-before 'check 'delete-failing-test + (lambda _ + (delete-file "t/sort-order.t") + #t)))))) + (inputs + `(("perl-date-simple" ,perl-date-simple) + ,@(package-inputs biber))))) (define-public rubber (package diff --git a/gnu/packages/tls.scm b/gnu/packages/tls.scm index 74cc25bb67..607fa33b27 100644 --- a/gnu/packages/tls.scm +++ b/gnu/packages/tls.scm @@ -437,15 +437,6 @@ security, and applying best practice development processes.") (arguments `(#:phases (modify-phases %standard-phases - (add-before 'install 'disable-egg-compression - (lambda _ - ;; Do not compress the egg. - ;; See <http://bugs.gnu.org/20765>. - (let ((port (open-file "setup.cfg" "a"))) - (display "\n[easy_install]\nzip_ok = 0\n" - port) - (close-port port) - #t))) (add-after 'install 'docs (lambda* (#:key outputs #:allow-other-keys) (let* ((out (assoc-ref outputs "out")) @@ -462,7 +453,6 @@ security, and applying best practice development processes.") ("python-sphinx" ,python-sphinx) ("python-sphinxcontrib-programoutput" ,python-sphinxcontrib-programoutput) ("python-sphinx-rtd-theme" ,python-sphinx-rtd-theme) - ("python-setuptools" ,python-setuptools) ("texinfo" ,texinfo))) (propagated-inputs `(("python-ndg-httpsclient" ,python-ndg-httpsclient) diff --git a/gnu/packages/tor.scm b/gnu/packages/tor.scm index e6fbf6e005..fe079fb104 100644 --- a/gnu/packages/tor.scm +++ b/gnu/packages/tor.scm @@ -208,11 +208,7 @@ networks.") ;; After all the patching we run the tests after installing. ;; This is also a known issue: ;; https://github.com/micahflee/onionshare/issues/284 - (lambda _ (zero? (system* "nosetests" "test"))))) - ;; can't compress the egg because it expects to find all the resources - ;; inside the egg as though it were a folder. - #:configure-flags '("--single-version-externally-managed" "--root=/") - )) + (lambda _ (zero? (system* "nosetests" "test"))))))) (native-inputs `(("python-nose" ,python-nose))) (inputs diff --git a/gnu/packages/upnp.scm b/gnu/packages/upnp.scm index c46e905c42..f680a52881 100644 --- a/gnu/packages/upnp.scm +++ b/gnu/packages/upnp.scm @@ -1,5 +1,6 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2014 Sree Harsha Totakura <sreeharsha@totakura.in> +;;; Copyright © 2016 Tobias Geerinckx-Rice <me@tobias.gr> ;;; ;;; This file is part of GNU Guix. ;;; @@ -27,7 +28,7 @@ (define-public miniupnpc (package (name "miniupnpc") - (version "1.9") + (version "2.0") (source (origin (method url-fetch) @@ -35,7 +36,7 @@ "http://miniupnp.tuxfamily.org/files/miniupnpc-" version ".tar.gz")) (sha256 - (base32 "0r24jdqcyf839n30ppimdna0hvybscyziaad7ng99fw0x19y88r9")))) + (base32 "0fzrc6fs8vzb2yvk01bd3q5jkarysl7gjlyaqncy3yvfk2wcwd6l")))) (build-system gnu-build-system) (native-inputs `(("python" ,python-2))) @@ -54,14 +55,22 @@ (string-append "LDFLAGS=-Wl,-rpath=" (assoc-ref %outputs "out") "/lib")) #:phases - (alist-delete 'configure %standard-phases))) + (modify-phases %standard-phases + (delete 'configure) + (add-before 'install 'qualify-paths + (lambda* (#:key outputs #:allow-other-keys) + (substitute* "external-ip.sh" + (("upnpc") + (string-append (assoc-ref outputs "out") "/bin/upnpc")))))))) (home-page "http://miniupnp.free.fr/") - (synopsis "Library implementing the client side UPnP protocol") + (synopsis "UPnP protocol client library") (description - "MiniUPnPc is a library is useful whenever an application needs to listen -for incoming connections but is run behind a UPnP enabled router or firewall. -Examples for such applications include: P2P applications, FTP clients for -active mode, IRC (for DCC) or IM applications, network games, any server -software.") + "The MiniUPnPc client library facilitates access to the services provided +by any Universal Plug and Play (UPnP) Internet Gateway Device (IGD) present on +the network. In UPnP terminology, MiniUPnPc is a UPnP Control Point. It is +useful whenever an application needs to listen for incoming connections while +running behind a UPnP-enabled router or firewall. Such applications include +peer-to-peer applications, active-mode FTP clients, DCC file transfers over +IRC, instant messaging, network games, and most server software.") (license (x11-style "file://LICENSE" "See 'LICENSE' file in the distribution")))) diff --git a/gnu/packages/version-control.scm b/gnu/packages/version-control.scm index e06a611164..03d7bbead3 100644 --- a/gnu/packages/version-control.scm +++ b/gnu/packages/version-control.scm @@ -112,14 +112,14 @@ as well as the classic centralized workflow.") (define-public git (package (name "git") - (version "2.10.2") + (version "2.11.0") (source (origin (method url-fetch) (uri (string-append "mirror://kernel.org/software/scm/git/git-" version ".tar.xz")) (sha256 (base32 - "0wc64dzcxrzgi6kwcljz6y3cwm3ajdgf6aws7g58azbhvl1jk04l")))) + "02zx368id8rys0bh2sjrxz0ln2l2wm5nf1vhp1rj72clsilqszky")))) (build-system gnu-build-system) (native-inputs `(("native-perl" ,perl) @@ -132,7 +132,7 @@ as well as the classic centralized workflow.") version ".tar.xz")) (sha256 (base32 - "0vxaz23vf3ki0q5zgn6mxr9x1hjryqn1hsmgyrgdk6h3yqbs7c43")))))) + "1n18jnpi0z3skwc1ckrm7zdld6i3zvn0g95cg9r9pdn0564fglxk")))))) (inputs `(("curl" ,curl) ("expat" ,expat) @@ -1156,8 +1156,7 @@ Mercurial, Bazaar, Darcs, CVS, Fossil, and Veracity.") (build-system python-build-system) (arguments `(#:python ,python-2)) (native-inputs - `(("python2-setuptools" ,python2-setuptools) - ;; for the tests + `(;; for the tests ("python2-six" ,python2-six))) (propagated-inputs `(("python2-dateutil" ,python2-dateutil-2) diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm index 4eab99b5aa..3b93f27426 100644 --- a/gnu/packages/video.scm +++ b/gnu/packages/video.scm @@ -441,14 +441,14 @@ standards (MPEG-2, MPEG-4 ASP/H.263, MPEG-4 AVC/H.264, and VC-1/VMW3).") (define-public ffmpeg (package (name "ffmpeg") - (version "3.2") + (version "3.2.1") (source (origin (method url-fetch) (uri (string-append "https://ffmpeg.org/releases/ffmpeg-" version ".tar.xz")) (sha256 (base32 - "1nnmd3h9pr2zic08isjcm1cmvcyd0aimpayb9r4qy45bihdhrxw8")))) + "1pxsy9s9n2nvz970rid3j3b45w6s7ziwnrbc16rny7k0bpd97kqy")))) (build-system gnu-build-system) (inputs `(("fontconfig" ,fontconfig) diff --git a/gnu/packages/vim.scm b/gnu/packages/vim.scm index 678f895917..83c21249b4 100644 --- a/gnu/packages/vim.scm +++ b/gnu/packages/vim.scm @@ -49,7 +49,7 @@ (define-public vim (package (name "vim") - (version "8.0.0095") + (version "8.0.0101") (source (origin (method url-fetch) (uri (string-append "https://github.com/vim/vim/archive/v" @@ -57,7 +57,7 @@ (file-name (string-append name "-" version ".tar.gz")) (sha256 (base32 - "1whib2zzqdpgfhpr7ymqxj3das6iyiapvx0izw4147mkg9yanmp7")))) + "0kzk1p5vnqr8j5jwb3p745zx3dki5jwlsp7rh6nli0ci2w6vg3r8")))) (build-system gnu-build-system) (arguments `(#:test-target "test" diff --git a/gnu/packages/web.scm b/gnu/packages/web.scm index 063a8a9a15..de949b60e3 100644 --- a/gnu/packages/web.scm +++ b/gnu/packages/web.scm @@ -123,14 +123,14 @@ and its related documentation.") (define-public nginx (package (name "nginx") - (version "1.11.4") + (version "1.11.6") (source (origin (method url-fetch) (uri (string-append "https://nginx.org/download/nginx-" version ".tar.gz")) (sha256 (base32 - "0fvb09ycxz3xnyynav6ybj6miwh9kv8jcb2vzrmvqhzn8cgiq8h6")))) + "1gc5phrzm2hbpvryaya6rlvasa00vjips4hv5q1rqbcfa6xsnlri")))) (build-system gnu-build-system) (inputs `(("pcre" ,pcre) ("openssl" ,openssl) @@ -150,7 +150,6 @@ and its related documentation.") (list (string-append "--prefix=" (assoc-ref outputs "out")) "--with-http_ssl_module" "--with-pcre-jit" - "--with-ipv6" "--with-debug" ;; Even when not cross-building, we pass the ;; --crossbuild option to avoid customizing for the @@ -3173,11 +3172,7 @@ CDF, Atom 0.3, and Atom 1.0 feeds.") l:freebsd-doc)))) ; documentation (define-public python2-feedparser - (let ((base (package-with-python2 - (strip-python2-variant python-feedparser)))) - (package (inherit base) - (native-inputs - `(("python2-setuptools" ,python2-setuptools)))))) + (package-with-python2 python-feedparser)) (define-public r-httpuv (package diff --git a/gnu/packages/wget.scm b/gnu/packages/wget.scm index 80da33272e..72aab86c14 100644 --- a/gnu/packages/wget.scm +++ b/gnu/packages/wget.scm @@ -1,6 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2012 Nikita Karetnikov <nikita@karetnikov.org> ;;; Copyright © 2014, 2015 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il> ;;; ;;; This file is part of GNU Guix. ;;; @@ -60,3 +61,36 @@ HTTPS and FTP protocols. It can resume interrupted downloads, use file name wild cards, supports proxies and cookies, and it can convert absolute links in downloaded documents to relative links.") (license gpl3+))) ; some files are under GPLv2+ + +(define-public wgetpaste + (package + (name "wgetpaste") + (version "2.28") + (source + (origin + (method url-fetch) + (uri (string-append "http://wgetpaste.zlin.dk/wgetpaste-" + version ".tar.bz2")) + (sha256 + (base32 + "1hh9svyypqcvdg5mjxyyfzpdzhylhf7s7xq5dzglnm4injx3i3ak")))) + (build-system gnu-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (delete 'configure) + (delete 'build) + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (bin (string-append out "/bin")) + (zsh (string-append out "/share/zsh/site-functions"))) + (install-file "wgetpaste" bin) + (install-file "_wgetpaste" zsh))))) + #:tests? #f)) ; no test target + (home-page "http://wgetpaste.zlin.dk/") + (synopsis "Script that automates pasting to a number of pastebin services") + (description + "@code{wgetpaste} is an extremely simple command-line interface to various +online pastebin services.") + (license public-domain))) diff --git a/gnu/packages/wicd.scm b/gnu/packages/wicd.scm index e70bf736a5..9de956c6ff 100644 --- a/gnu/packages/wicd.scm +++ b/gnu/packages/wicd.scm @@ -67,6 +67,9 @@ (arguments `(#:python ,python-2 #:tests? #f ; test suite requires networking + ;; wicd directly extends distutils command classes, + ;; we can't easily make setup.py use setuptools. + #:use-setuptools? #f #:phases (alist-cons-before 'build 'configure diff --git a/gnu/packages/wine.scm b/gnu/packages/wine.scm index 9a1bd56608..367f27af5e 100644 --- a/gnu/packages/wine.scm +++ b/gnu/packages/wine.scm @@ -1,6 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2014, 2015 Sou Bunnbu <iyzsong@gmail.com> ;;; Copyright © 2016 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il> ;;; ;;; This file is part of GNU Guix. ;;; @@ -52,7 +53,7 @@ (define-public wine (package (name "wine") - (version "1.9.15") + (version "1.9.24") (source (origin (method url-fetch) (uri (string-append "https://dl.winehq.org/wine/source/" @@ -60,7 +61,7 @@ "/wine-" version ".tar.bz2")) (sha256 (base32 - "1nmd65knzyh8b0yhxlqqvzai5rpnmhhm0c46n789zr5hj74jm6fg")))) + "0qb07vfxwz41wj71lb0ss3apf22m4ch06382rqfksf7gg34pswnb")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config) ("gettext" ,gettext-minimal) @@ -117,19 +118,19 @@ (list "SHELL=bash") #:phases - (alist-cons-after - 'configure 'patch-dlopen-paths - ;; Hardcode dlopened sonames to absolute paths. - (lambda _ - (let* ((library-path (search-path-as-string->list - (getenv "LIBRARY_PATH"))) - (find-so (lambda (soname) - (search-path library-path soname)))) - (substitute* "include/config.h" - (("(#define SONAME_.* )\"(.*)\"" _ defso soname) - (format #f "~a\"~a\"" defso (find-so soname)))))) - %standard-phases))) - (home-page "http://www.winehq.org/") + (modify-phases %standard-phases + (add-after 'configure 'patch-dlopen-paths + ;; Hardcode dlopened sonames to absolute paths. + (lambda _ + (let* ((library-path (search-path-as-string->list + (getenv "LIBRARY_PATH"))) + (find-so (lambda (soname) + (search-path library-path soname)))) + (substitute* "include/config.h" + (("(#define SONAME_.* )\"(.*)\"" _ defso soname) + (format #f "~a\"~a\"" defso (find-so soname)))) + #t)))))) + (home-page "https://www.winehq.org/") (synopsis "Implementation of the Windows API") (description "Wine (originally an acronym for \"Wine Is Not an Emulator\") is a diff --git a/gnu/packages/wxwidgets.scm b/gnu/packages/wxwidgets.scm index 31da2a9eed..5285037ffe 100644 --- a/gnu/packages/wxwidgets.scm +++ b/gnu/packages/wxwidgets.scm @@ -1,6 +1,8 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2015 Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.com> ;;; Copyright © 2016 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2016 Theodoros Foradis <theodoros.for@openmailbox.org> +;;; Copyright © 2016 Danny Milosavljevic <dannym@scratchpost.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -22,6 +24,7 @@ #:use-module (guix download) #:use-module ((guix licenses) #:prefix l:) #:use-module (guix build-system glib-or-gtk) + #:use-module (guix build-system python) #:use-module (guix build utils) #:use-module (gnu packages) #:use-module (gnu packages compression) @@ -31,6 +34,7 @@ #:use-module (gnu packages gtk) #:use-module (gnu packages image) #:use-module (gnu packages pkg-config) + #:use-module (gnu packages python) #:use-module (gnu packages sdl) #:use-module (gnu packages webkit) #:use-module (gnu packages xorg)) @@ -109,3 +113,82 @@ and many other languages.") (assoc-ref %outputs "out") "/lib")) ;; No 'check' target. #:tests? #f)))) + +(define-public wxwidgets-gtk2 + (package (inherit wxwidgets) + (inputs `(("gtk+" ,gtk+-2) + ,@(alist-delete + "gtk+" + (package-inputs wxwidgets)))) + (name "wxwidgets-gtk2"))) + +(define-public python2-wxpython + (package + (name "python2-wxpython") + (version "3.0.2.0") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://sourceforge/wxpython/wxPython/" + version "/wxPython-src-" version ".tar.bz2")) + (sha256 + (base32 + "0qfzx3sqx4mwxv99sfybhsij4b5pc03ricl73h4vhkzazgjjjhfm")) + (modules '((guix build utils))) + (snippet + '(begin + (lambda (folder) + (delete-file-recursively (string-append "src/" folder)) + '("expat" "jpeg" "png" "tiff" "zlib" "msw" "osx" "msdos")) + (substitute* '("wxPython/setup.py") + ;; setup.py tries to keep its own license the same as wxwidget's + ;; license (which it expects under $WXWIN/docs). + (("'preamble.txt', 'licence.txt', 'licendoc.txt', 'lgpl.txt'") + "")))))) + (build-system python-build-system) + (arguments + `(#:python ,python-2 + #:tests? #f ; tests fail + ;; wxPython directly extends distutils command classes, + ;; we can't easily make setup.py use setuptools. + #:use-setuptools? #f + #:configure-flags (list "WXPORT=gtk2" + "UNICODE=1") + #:phases + (modify-phases %standard-phases + (add-before 'build 'chdir + (lambda _ + (chdir "wxPython") + #t)) + (add-after 'chdir 'set-wx-out-dir + (lambda* (#:key outputs #:allow-other-keys) + ;; By default, install phase tries to copy the wxPython headers in + ;; gnu/store/...-wxwidgets-3.0.2 , which it can't, so they are + ;; redirected to the output directory by setting WXPREFIX. + (substitute* "config.py" + (("= getWxConfigValue\\('--prefix'\\)") + (string-append "= '" (assoc-ref outputs "out") "'"))) + (substitute* "wx/build/config.py" + (("= getWxConfigValue\\('--prefix'\\)") + (string-append "= '" (assoc-ref outputs "out") "'"))) + #t)) + (add-after 'set-wx-out-dir 'setenv + (lambda* (#:key inputs outputs #:allow-other-keys) + (setenv "WXWIN" (assoc-ref inputs "wxwidgets")) + (use-modules (ice-9 popen) (ice-9 rdelim)) + (let ((port (open-pipe* OPEN_READ + (string-append (assoc-ref inputs "wxwidgets") + "/bin/wx-config") "--cppflags"))) + (setenv "CPPFLAGS" (read-string port)) + (close-pipe port)) + #t))))) + (native-inputs + `(("mesa" ,mesa) ; for glcanvas + ("pkg-config" ,pkg-config))) + (inputs + `(("gtk+" ,gtk+-2) ; for wxPython/src/helpers.cpp + ("wxwidgets" ,wxwidgets-gtk2))) + (synopsis "Python 2 Bindings for wxWidgets") + (description "@code{wxpython} provides Python 2 bindings for wxWidgets.") + (home-page "http://wxpython.org/") + (license (package-license wxwidgets)))) diff --git a/gnu/packages/xdisorg.scm b/gnu/packages/xdisorg.scm index 86f5ad203c..3d1108d42e 100644 --- a/gnu/packages/xdisorg.scm +++ b/gnu/packages/xdisorg.scm @@ -92,8 +92,7 @@ (inputs `(("pygtk" ,python2-pygtk) ("xrandr" ,xrandr))) (native-inputs `(("gettext" ,gettext-minimal) - ("python-docutils" ,python2-docutils) - ("python-setuptools" ,python2-setuptools))) + ("python-docutils" ,python2-docutils))) (home-page "https://christian.amsuess.com/tools/arandr/") (synopsis "Another RandR graphical user interface") ;; TRANSLATORS: "X11 resize-and-rotate" should not be translated. diff --git a/gnu/packages/xml.scm b/gnu/packages/xml.scm index 505d585e66..80534d69f2 100644 --- a/gnu/packages/xml.scm +++ b/gnu/packages/xml.scm @@ -329,6 +329,29 @@ XML parser and the high performance DOM implementation.") @code{XML::LibXML}.") (license (package-license perl)))) +(define-public perl-xml-libxslt + (package + (name "perl-xml-libxslt") + (version "1.95") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://cpan/authors/id/S/SH/SHLOMIF/" + "XML-LibXSLT-" version ".tar.gz")) + (sha256 + (base32 + "0dggycql18kfxzkb1kw3yc7gslxlrrgyyn2r2ygsylycb89j3jpi")))) + (build-system perl-build-system) + (inputs + `(("libxslt" ,libxslt))) + (propagated-inputs + `(("perl-xml-libxml" ,perl-xml-libxml))) + (home-page "http://search.cpan.org/dist/XML-LibXSLT") + (synopsis "Perl bindings to GNOME libxslt library") + (description "This Perl module is an interface to the GNOME project's +libxslt library.") + (license (package-license perl)))) + (define-public perl-xml-namespacesupport (package (name "perl-xml-namespacesupport") diff --git a/gnu/packages/xorg.scm b/gnu/packages/xorg.scm index 47f7eb8db6..4d387f1c04 100644 --- a/gnu/packages/xorg.scm +++ b/gnu/packages/xorg.scm @@ -10,6 +10,7 @@ ;;; Copyright © 2016 ng0 <ng0@we.make.ritual.n0.is> ;;; Copyright © 2016 Alex Kost <alezost@gmail.com> ;;; Copyright © 2016 David Craven <david@craven.ch> +;;; Copyright © 2016 John Darrington <jmd@gnu.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -335,6 +336,44 @@ provided.") "See 'dri3proto.h' in the distribution.")))) +(define-public editres + (package + (name "editres") + (version "1.0.6") + (source + (origin + (method url-fetch) + (uri (string-append + "mirror://xorg/individual/app/" name "-" + version + ".tar.bz2")) + (sha256 + (base32 + "1w2d5hb5pw9ii2jlf4yjlp899402zfwc8hdkpdr3i1fy1cjd2riv")))) + (build-system gnu-build-system) + (arguments + `(#:configure-flags + (list (string-append "--with-appdefaultdir=" + %output "/lib/X11/app-defaults")))) + (inputs + `(("libxaw" ,libxaw) + ("libxmu" ,libxmu) + ("libxt" ,libxt))) + (native-inputs + `(("pkg-config" ,pkg-config))) + (home-page "https://www.x.org/wiki/") + (synopsis "Tool to browse and edit X Toolkit resource specifications") + (description + "Editres is a tool that allows users and application developers to view +the full widget hierarchy of any X Toolkit application that speaks the Editres +protocol. In addition, editres will help the user construct resource +specifications, allow the user to apply the resource to the application and +view the results dynamically. Once the user is happy with a resource +specification editres will append the resource string to the user's X +Resources file.") + (license license:x11))) + + (define-public encodings (package (name "encodings") @@ -4847,7 +4886,7 @@ an X Window System display.") (define-public libxfont (package (name "libxfont") - (version "1.5.1") + (version "1.5.2") (source (origin (method url-fetch) @@ -4857,7 +4896,7 @@ an X Window System display.") ".tar.bz2")) (sha256 (base32 - "1630v3sfvwwlimb2ja10c84ql6v1mw9bdfhvan7pbybkgi99h25p")))) + "0w8d07bkmjiarkx09579bl8zsq903mn8javc7qpi0ix4ink5x502")))) (build-system gnu-build-system) (propagated-inputs `(("fontsproto" ,fontsproto) diff --git a/gnu/services/configuration.scm b/gnu/services/configuration.scm new file mode 100644 index 0000000000..9f28aabc96 --- /dev/null +++ b/gnu/services/configuration.scm @@ -0,0 +1,205 @@ +;;; GNU Guix --- Functional package management for GNU +;;; Copyright © 2015 Andy Wingo <wingo@igalia.com> +;;; +;;; This file is part of GNU Guix. +;;; +;;; GNU Guix is free software; you can redistribute it and/or modify it +;;; under the terms of the GNU General Public License as published by +;;; the Free Software Foundation; either version 3 of the License, or (at +;;; your option) any later version. +;;; +;;; GNU Guix is distributed in the hope that it will be useful, but +;;; WITHOUT ANY WARRANTY; without even the implied warranty of +;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +;;; GNU General Public License for more details. +;;; +;;; You should have received a copy of the GNU General Public License +;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. + +(define-module (gnu services configuration) + #:use-module (guix packages) + #:use-module (guix records) + #:use-module (guix gexp) + #:autoload (texinfo) (texi-fragment->stexi) + #:autoload (texinfo serialize) (stexi->texi) + #:use-module (ice-9 match) + #:use-module ((srfi srfi-1) #:select (append-map)) + #:use-module (srfi srfi-34) + #:use-module (srfi srfi-35) + #:export (configuration-field + configuration-field-name + configuration-missing-field + configuration-field-error + serialize-configuration + define-configuration + validate-configuration + generate-documentation + serialize-field + serialize-string + serialize-name + serialize-space-separated-string-list + space-separated-string-list? + serialize-file-name + file-name? + serialize-boolean + serialize-package)) + +;;; Commentary: +;;; +;;; Syntax for creating Scheme bindings to complex configuration files. +;;; +;;; Code: + +(define-condition-type &configuration-error &error + configuration-error?) + +(define (configuration-error message) + (raise (condition (&message (message message)) + (&configuration-error)))) +(define (configuration-field-error field val) + (configuration-error + (format #f "Invalid value for field ~a: ~s" field val))) +(define (configuration-missing-field kind field) + (configuration-error + (format #f "~a configuration missing required field ~a" kind field))) + +(define-record-type* <configuration-field> + configuration-field make-configuration-field configuration-field? + (name configuration-field-name) + (type configuration-field-type) + (getter configuration-field-getter) + (predicate configuration-field-predicate) + (serializer configuration-field-serializer) + (default-value-thunk configuration-field-default-value-thunk) + (documentation configuration-field-documentation)) + +(define (serialize-configuration config fields) + (for-each (lambda (field) + ((configuration-field-serializer field) + (configuration-field-name field) + ((configuration-field-getter field) config))) + fields)) + +(define (validate-configuration config fields) + (for-each (lambda (field) + (let ((val ((configuration-field-getter field) config))) + (unless ((configuration-field-predicate field) val) + (configuration-field-error + (configuration-field-name field) val)))) + fields)) + +(define-syntax define-configuration + (lambda (stx) + (define (id ctx part . parts) + (let ((part (syntax->datum part))) + (datum->syntax + ctx + (match parts + (() part) + (parts (symbol-append part + (syntax->datum (apply id ctx parts)))))))) + (syntax-case stx () + ((_ stem (field (field-type def) doc) ...) + (with-syntax (((field-getter ...) + (map (lambda (field) + (id #'stem #'stem #'- field)) + #'(field ...))) + ((field-predicate ...) + (map (lambda (type) + (id #'stem type #'?)) + #'(field-type ...))) + ((field-serializer ...) + (map (lambda (type) + (id #'stem #'serialize- type)) + #'(field-type ...)))) + #`(begin + (define-record-type* #,(id #'stem #'< #'stem #'>) + #,(id #'stem #'% #'stem) + #,(id #'stem #'make- #'stem) + #,(id #'stem #'stem #'?) + (field field-getter (default def)) + ...) + (define #,(id #'stem #'stem #'-fields) + (list (configuration-field + (name 'field) + (type 'field-type) + (getter field-getter) + (predicate field-predicate) + (serializer field-serializer) + (default-value-thunk (lambda () def)) + (documentation doc)) + ...)) + (define-syntax-rule (stem arg (... ...)) + (let ((conf (#,(id #'stem #'% #'stem) arg (... ...)))) + (validate-configuration conf + #,(id #'stem #'stem #'-fields)) + conf)))))))) + +(define (uglify-field-name field-name) + (let ((str (symbol->string field-name))) + (string-concatenate + (map string-titlecase + (string-split (if (string-suffix? "?" str) + (substring str 0 (1- (string-length str))) + str) + #\-))))) + +(define (serialize-field field-name val) + (format #t "~a ~a\n" (uglify-field-name field-name) val)) + +(define (serialize-package field-name val) + #f) + +(define (serialize-string field-name val) + (serialize-field field-name val)) + +(define (space-separated-string-list? val) + (and (list? val) + (and-map (lambda (x) + (and (string? x) (not (string-index x #\space)))) + val))) +(define (serialize-space-separated-string-list field-name val) + (serialize-field field-name (string-join val " "))) + +(define (file-name? val) + (and (string? val) + (string-prefix? "/" val))) +(define (serialize-file-name field-name val) + (serialize-string field-name val)) + +(define (serialize-boolean field-name val) + (serialize-string field-name (if val "yes" "no"))) + +;; A little helper to make it easier to document all those fields. +(define (generate-documentation documentation documentation-name) + (define (str x) (object->string x)) + (define (generate configuration-name) + (match (assq-ref documentation configuration-name) + ((fields . sub-documentation) + `((para "Available " (code ,(str configuration-name)) " fields are:") + ,@(map + (lambda (f) + (let ((field-name (configuration-field-name f)) + (field-type (configuration-field-type f)) + (field-docs (cdr (texi-fragment->stexi + (configuration-field-documentation f)))) + (default (catch #t + (configuration-field-default-value-thunk f) + (lambda _ '%invalid)))) + (define (show-default? val) + (or (string? default) (number? default) (boolean? default) + (and (symbol? val) (not (eq? val '%invalid))) + (and (list? val) (and-map show-default? val)))) + `(deftypevr (% (category + (code ,(str configuration-name)) " parameter") + (data-type ,(str field-type)) + (name ,(str field-name))) + ,@field-docs + ,@(if (show-default? default) + `((para "Defaults to " (samp ,(str default)) ".")) + '()) + ,@(append-map + generate + (or (assq-ref sub-documentation field-name) '()))))) + fields))))) + (stexi->texi `(*fragment* . ,(generate documentation-name)))) diff --git a/gnu/services/cuirass.scm b/gnu/services/cuirass.scm new file mode 100644 index 0000000000..d843c07335 --- /dev/null +++ b/gnu/services/cuirass.scm @@ -0,0 +1,115 @@ +;;; GNU Guix --- Functional package management for GNU +;;; Copyright © 2016 Mathieu Lirzin <mthl@gnu.org> +;;; +;;; This file is part of GNU Guix. +;;; +;;; GNU Guix is free software: you can redistribute it and/or modify +;;; it under the terms of the GNU General Public License as published by +;;; the Free Software Foundation, either version 3 of the License, or +;;; (at your option) any later version. +;;; +;;; GNU Guix is distributed in the hope that it will be useful, +;;; but WITHOUT ANY WARRANTY; without even the implied warranty of +;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +;;; GNU General Public License for more details. +;;; +;;; You should have received a copy of the GNU General Public License +;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. + +(define-module (gnu services cuirass) + #:use-module (guix gexp) + #:use-module (guix records) + #:use-module (gnu packages admin) + #:autoload (gnu packages ci) (cuirass) + #:use-module (gnu services) + #:use-module (gnu services base) + #:use-module (gnu services shepherd) + #:use-module (gnu system shadow) + #:export (<cuirass-configuration> + cuirass-configuration + cuirass-configuration? + + cuirass-service-type + cuirass-service)) + +;;;; Commentary: +;;; +;;; This module implements a service that to run instances of Cuirass, a +;;; continuous integration tool. +;;; +;;;; Code: + +(define-record-type* <cuirass-configuration> + cuirass-configuration make-cuirass-configuration + cuirass-configuration? + (cache-directory cuirass-configuration-cache-directory ;string (dir-name) + (default "")) + (user cuirass-configuration-user ;string + (default "cuirass")) + (group cuirass-configuration-group ;string + (default "cuirass")) + (interval cuirass-configuration-interval ;integer (seconds) + (default 60)) + (database cuirass-configuration-database ;string (file-name) + (default "/var/run/cuirass/cuirass.db")) + (specifications cuirass-configuration-specifications ;string (file-name) + (default "")) + (use-substitutes? cuirass-configuration-use-substitutes? ;boolean + (default #f)) + (one-shot? cuirass-configuration-one-shot? ;boolean + (default #f))) + +(define (cuirass-shepherd-service config) + "Return a <shepherd-service> for the Cuirass service with CONFIG." + (and + (cuirass-configuration? config) + (let ((cache-directory (cuirass-configuration-cache-directory config)) + (interval (cuirass-configuration-interval config)) + (database (cuirass-configuration-database config)) + (specifications (cuirass-configuration-specifications config)) + (use-substitutes? (cuirass-configuration-use-substitutes? config)) + (one-shot? (cuirass-configuration-one-shot? config))) + (list (shepherd-service + (documentation "Run Cuirass.") + (provision '(cuirass)) + (requirement '(guix-daemon)) + (start #~(make-forkexec-constructor + (list (string-append #$cuirass "/bin/cuirass") + #$@(if (string=? "" cache-directory) + '() + (list "--cache-directory" cache-directory)) + #$@(if (string=? "" specifications) + '() + (list "--specifications" specifications)) + "--database" #$database + "--interval" #$(number->string interval) + #$@(if use-substitutes? '("--use-substitutes") '()) + #$@(if one-shot? '("--one-shot") '())))) + (stop #~(make-kill-destructor))))))) + +(define (cuirass-account config) + "Return the user accounts and user groups for CONFIG." + (let ((cuirass-user (cuirass-configuration-user config)) + (cuirass-group (cuirass-configuration-group config))) + (list (user-group + (name cuirass-group) + (system? #t)) + (user-account + (name cuirass-user) + (group cuirass-group) + (system? #t) + (comment "Cuirass privilege separation user") + (home-directory (string-append "/var/run/" cuirass-user)) + (shell #~(string-append #$shadow "/sbin/nologin")))))) + +(define cuirass-service-type + (service-type + (name 'cuirass) + (extensions + (list + (service-extension shepherd-root-service-type cuirass-shepherd-service) + (service-extension account-service-type cuirass-account))))) + +(define* (cuirass-service #:key (config (cuirass-configuration))) + "Return a service that runs cuirass according to CONFIG." + (service cuirass-service-type config)) diff --git a/gnu/services/cups.scm b/gnu/services/cups.scm index 7542ee26c0..391046a75f 100644 --- a/gnu/services/cups.scm +++ b/gnu/services/cups.scm @@ -19,6 +19,7 @@ (define-module (gnu services cups) #:use-module (gnu services) #:use-module (gnu services shepherd) + #:use-module (gnu services configuration) #:use-module (gnu system shadow) #:use-module (gnu packages admin) #:use-module (gnu packages cups) @@ -26,16 +27,9 @@ #:use-module (guix packages) #:use-module (guix records) #:use-module (guix gexp) - #:use-module (texinfo) - #:use-module (texinfo serialize) #:use-module (ice-9 match) #:use-module ((srfi srfi-1) #:select (append-map)) - #:use-module (srfi srfi-34) - #:use-module (srfi srfi-35) - #:export (&cups-configuation-error - cups-configuration-error? - - cups-service-type + #:export (cups-service-type cups-configuration opaque-cups-configuration @@ -51,91 +45,6 @@ ;;; ;;; Code: -(define-condition-type &cups-configuration-error &error - cups-configuration-error?) - -(define (cups-error message) - (raise (condition (&message (message message)) - (&cups-configuration-error)))) -(define (cups-configuration-field-error field val) - (cups-error - (format #f "Invalid value for field ~a: ~s" field val))) -(define (cups-configuration-missing-field kind field) - (cups-error - (format #f "~a configuration missing required field ~a" kind field))) - -(define-record-type* <configuration-field> - configuration-field make-configuration-field configuration-field? - (name configuration-field-name) - (type configuration-field-type) - (getter configuration-field-getter) - (predicate configuration-field-predicate) - (serializer configuration-field-serializer) - (default-value-thunk configuration-field-default-value-thunk) - (documentation configuration-field-documentation)) - -(define (serialize-configuration config fields) - (for-each (lambda (field) - ((configuration-field-serializer field) - (configuration-field-name field) - ((configuration-field-getter field) config))) - fields)) - -(define (validate-configuration config fields) - (for-each (lambda (field) - (let ((val ((configuration-field-getter field) config))) - (unless ((configuration-field-predicate field) val) - (cups-configuration-field-error - (configuration-field-name field) val)))) - fields)) - -(define-syntax define-configuration - (lambda (stx) - (define (id ctx part . parts) - (let ((part (syntax->datum part))) - (datum->syntax - ctx - (match parts - (() part) - (parts (symbol-append part - (syntax->datum (apply id ctx parts)))))))) - (syntax-case stx () - ((_ stem (field (field-type def) doc) ...) - (with-syntax (((field-getter ...) - (map (lambda (field) - (id #'stem #'stem #'- field)) - #'(field ...))) - ((field-predicate ...) - (map (lambda (type) - (id #'stem type #'?)) - #'(field-type ...))) - ((field-serializer ...) - (map (lambda (type) - (id #'stem #'serialize- type)) - #'(field-type ...)))) - #`(begin - (define-record-type* #,(id #'stem #'< #'stem #'>) - #,(id #'stem #'% #'stem) - #,(id #'stem #'make- #'stem) - #,(id #'stem #'stem #'?) - (field field-getter (default def)) - ...) - (define #,(id #'stem #'stem #'-fields) - (list (configuration-field - (name 'field) - (type 'field-type) - (getter field-getter) - (predicate field-predicate) - (serializer field-serializer) - (default-value-thunk (lambda () def)) - (documentation doc)) - ...)) - (define-syntax-rule (stem arg (... ...)) - (let ((conf (#,(id #'stem #'% #'stem) arg (... ...)))) - (validate-configuration conf - #,(id #'stem #'stem #'-fields)) - conf)))))))) - (define %cups-accounts (list (user-group (name "lp") (system? #t)) (user-group (name "lpadmin") (system? #t)) @@ -147,24 +56,6 @@ (home-directory "/var/empty") (shell (file-append shadow "/sbin/nologin"))))) -(define (uglify-field-name field-name) - (let ((str (symbol->string field-name))) - (string-concatenate - (map string-titlecase - (string-split (if (string-suffix? "?" str) - (substring str 0 (1- (string-length str))) - str) - #\-))))) - -(define (serialize-field field-name val) - (format #t "~a ~a\n" (uglify-field-name field-name) val)) - -(define (serialize-package field-name val) - #f) - -(define (serialize-string field-name val) - (serialize-field field-name val)) - (define (multiline-string-list? val) (and (list? val) (and-map (lambda (x) @@ -173,28 +64,11 @@ (define (serialize-multiline-string-list field-name val) (for-each (lambda (str) (serialize-field field-name str)) val)) -(define (space-separated-string-list? val) - (and (list? val) - (and-map (lambda (x) - (and (string? x) (not (string-index x #\space)))) - val))) -(define (serialize-space-separated-string-list field-name val) - (serialize-field field-name (string-join val " "))) - (define (space-separated-symbol-list? val) (and (list? val) (and-map symbol? val))) (define (serialize-space-separated-symbol-list field-name val) (serialize-field field-name (string-join (map symbol->string val) " "))) -(define (file-name? val) - (and (string? val) - (string-prefix? "/" val))) -(define (serialize-file-name field-name val) - (serialize-string field-name val)) - -(define (serialize-boolean field-name val) - (serialize-string field-name (if val "yes" "no"))) - (define (non-negative-integer? val) (and (exact-integer? val) (not (negative? val)))) (define (serialize-non-negative-integer field-name val) @@ -333,7 +207,7 @@ methods. Otherwise apply to only the listed methods.") (define-configuration location-access-control (path - (file-name (cups-configuration-missing-field 'location-access-control 'path)) + (file-name (configuration-missing-field 'location-access-control 'path)) "Specifies the URI path to which the access control applies.") (access-controls (access-control-list '()) @@ -359,7 +233,7 @@ methods. Otherwise apply to only the listed methods.") (define-configuration policy-configuration (name - (string (cups-configuration-missing-field 'policy-configuration 'name)) + (string (configuration-missing-field 'policy-configuration 'name)) "Name of the policy.") (job-private-access (string "@OWNER @SYSTEM") @@ -925,12 +799,12 @@ IPP specifications.") (package-list '()) "Drivers and other extensions to the CUPS package.") (cupsd.conf - (string (cups-configuration-missing-field 'opaque-cups-configuration - 'cupsd.conf)) + (string (configuration-missing-field 'opaque-cups-configuration + 'cupsd.conf)) "The contents of the @code{cupsd.conf} to use.") (cups-files.conf - (string (cups-configuration-missing-field 'opaque-cups-configuration - 'cups-files.conf)) + (string (configuration-missing-field 'opaque-cups-configuration + 'cups-files.conf)) "The contents of the @code{cups-files.conf} to use.")) (define %cups-activation @@ -1117,8 +991,8 @@ extensions that it uses." extensions))))))))) ;; A little helper to make it easier to document all those fields. -(define (generate-documentation) - (define documentation +(define (generate-cups-documentation) + (generate-documentation `((cups-configuration ,cups-configuration-fields (files-configuration files-configuration) @@ -1132,35 +1006,5 @@ extensions that it uses." ,location-access-control-fields (method-access-controls method-access-controls)) (operation-access-controls ,operation-access-control-fields) - (method-access-controls ,method-access-control-fields))) - (define (str x) (object->string x)) - (define (generate configuration-name) - (match (assq-ref documentation configuration-name) - ((fields . sub-documentation) - `((para "Available " (code ,(str configuration-name)) " fields are:") - ,@(map - (lambda (f) - (let ((field-name (configuration-field-name f)) - (field-type (configuration-field-type f)) - (field-docs (cdr (texi-fragment->stexi - (configuration-field-documentation f)))) - (default (catch #t - (configuration-field-default-value-thunk f) - (lambda _ '%invalid)))) - (define (show-default? val) - (or (string? default) (number? default) (boolean? default) - (and (symbol? val) (not (eq? val '%invalid))) - (and (list? val) (and-map show-default? val)))) - `(deftypevr (% (category - (code ,(str configuration-name)) " parameter") - (data-type ,(str field-type)) - (name ,(str field-name))) - ,@field-docs - ,@(if (show-default? default) - `((para "Defaults to " (samp ,(str default)) ".")) - '()) - ,@(append-map - generate - (or (assq-ref sub-documentation field-name) '()))))) - fields))))) - (stexi->texi `(*fragment* . ,(generate 'cups-configuration)))) + (method-access-controls ,method-access-control-fields)) + 'cups-configuration)) diff --git a/gnu/services/dbus.scm b/gnu/services/dbus.scm index 876f56d45f..26390a4acd 100644 --- a/gnu/services/dbus.scm +++ b/gnu/services/dbus.scm @@ -21,7 +21,9 @@ #:use-module (gnu services) #:use-module (gnu services shepherd) #:use-module (gnu system shadow) + #:use-module (gnu system pam) #:use-module ((gnu packages glib) #:select (dbus)) + #:use-module (gnu packages polkit) #:use-module (gnu packages admin) #:use-module (guix gexp) #:use-module (guix records) @@ -30,7 +32,10 @@ #:export (dbus-configuration dbus-configuration? dbus-root-service-type - dbus-service)) + dbus-service + + polkit-service-type + polkit-service)) ;;; ;;; D-Bus. @@ -218,4 +223,91 @@ and policy files. For example, to allow avahi-daemon to use the system bus, (dbus-configuration (dbus dbus) (services services)))) + +;;; +;;; Polkit privilege management service. +;;; + +(define-record-type* <polkit-configuration> + polkit-configuration make-polkit-configuration + polkit-configuration? + (polkit polkit-configuration-polkit ;<package> + (default polkit)) + (actions polkit-configuration-actions ;list of <package> + (default '()))) + +(define %polkit-accounts + (list (user-group (name "polkitd") (system? #t)) + (user-account + (name "polkitd") + (group "polkitd") + (system? #t) + (comment "Polkit daemon user") + (home-directory "/var/empty") + (shell "/run/current-system/profile/sbin/nologin")))) + +(define %polkit-pam-services + (list (unix-pam-service "polkit-1"))) + +(define (polkit-directory packages) + "Return a directory containing an @file{actions} and possibly a +@file{rules.d} sub-directory, for use as @file{/etc/polkit-1}." + (with-imported-modules '((guix build union)) + (computed-file "etc-polkit-1" + #~(begin + (use-modules (guix build union) (srfi srfi-26)) + + (union-build #$output + (map (cut string-append <> + "/share/polkit-1") + (list #$@packages))))))) + +(define polkit-etc-files + (match-lambda + (($ <polkit-configuration> polkit packages) + `(("polkit-1" ,(polkit-directory (cons polkit packages))))))) + +(define polkit-setuid-programs + (match-lambda + (($ <polkit-configuration> polkit) + (list (file-append polkit "/lib/polkit-1/polkit-agent-helper-1") + (file-append polkit "/bin/pkexec"))))) + +(define polkit-service-type + (service-type (name 'polkit) + (extensions + (list (service-extension account-service-type + (const %polkit-accounts)) + (service-extension pam-root-service-type + (const %polkit-pam-services)) + (service-extension dbus-root-service-type + (compose + list + polkit-configuration-polkit)) + (service-extension etc-service-type + polkit-etc-files) + (service-extension setuid-program-service-type + polkit-setuid-programs))) + + ;; Extensions are lists of packages that provide polkit rules + ;; or actions under share/polkit-1/{actions,rules.d}. + (compose concatenate) + (extend (lambda (config actions) + (polkit-configuration + (inherit config) + (actions + (append (polkit-configuration-actions config) + actions))))))) + +(define* (polkit-service #:key (polkit polkit)) + "Return a service that runs the +@uref{http://www.freedesktop.org/wiki/Software/polkit/, Polkit privilege +management service}, which allows system administrators to grant access to +privileged operations in a structured way. By querying the Polkit service, a +privileged system component can know when it should grant additional +capabilities to ordinary users. For example, an ordinary user can be granted +the capability to suspend the system if the user is logged in locally." + (service polkit-service-type + (polkit-configuration (polkit polkit)))) + ;;; dbus.scm ends here diff --git a/gnu/services/desktop.scm b/gnu/services/desktop.scm index dfd1ea6e92..7555780ade 100644 --- a/gnu/services/desktop.scm +++ b/gnu/services/desktop.scm @@ -37,7 +37,6 @@ #:use-module (gnu packages gnome) #:use-module (gnu packages xfce) #:use-module (gnu packages avahi) - #:use-module (gnu packages polkit) #:use-module (gnu packages xdisorg) #:use-module (gnu packages suckless) #:use-module (gnu packages linux) @@ -68,11 +67,6 @@ bluetooth-service - polkit-configuration - polkit-configuration? - polkit-service - polkit-service-type - elogind-configuration elogind-configuration? elogind-service @@ -415,93 +409,6 @@ Users need to be in the @code{lp} group to access the D-Bus service. ;;; -;;; Polkit privilege management service. -;;; - -(define-record-type* <polkit-configuration> - polkit-configuration make-polkit-configuration - polkit-configuration? - (polkit polkit-configuration-polkit ;<package> - (default polkit)) - (actions polkit-configuration-actions ;list of <package> - (default '()))) - -(define %polkit-accounts - (list (user-group (name "polkitd") (system? #t)) - (user-account - (name "polkitd") - (group "polkitd") - (system? #t) - (comment "Polkit daemon user") - (home-directory "/var/empty") - (shell "/run/current-system/profile/sbin/nologin")))) - -(define %polkit-pam-services - (list (unix-pam-service "polkit-1"))) - -(define (polkit-directory packages) - "Return a directory containing an @file{actions} and possibly a -@file{rules.d} sub-directory, for use as @file{/etc/polkit-1}." - (with-imported-modules '((guix build union)) - (computed-file "etc-polkit-1" - #~(begin - (use-modules (guix build union) (srfi srfi-26)) - - (union-build #$output - (map (cut string-append <> - "/share/polkit-1") - (list #$@packages))))))) - -(define polkit-etc-files - (match-lambda - (($ <polkit-configuration> polkit packages) - `(("polkit-1" ,(polkit-directory (cons polkit packages))))))) - -(define polkit-setuid-programs - (match-lambda - (($ <polkit-configuration> polkit) - (list (file-append polkit "/lib/polkit-1/polkit-agent-helper-1") - (file-append polkit "/bin/pkexec"))))) - -(define polkit-service-type - (service-type (name 'polkit) - (extensions - (list (service-extension account-service-type - (const %polkit-accounts)) - (service-extension pam-root-service-type - (const %polkit-pam-services)) - (service-extension dbus-root-service-type - (compose - list - polkit-configuration-polkit)) - (service-extension etc-service-type - polkit-etc-files) - (service-extension setuid-program-service-type - polkit-setuid-programs))) - - ;; Extensions are lists of packages that provide polkit rules - ;; or actions under share/polkit-1/{actions,rules.d}. - (compose concatenate) - (extend (lambda (config actions) - (polkit-configuration - (inherit config) - (actions - (append (polkit-configuration-actions config) - actions))))))) - -(define* (polkit-service #:key (polkit polkit)) - "Return a service that runs the -@uref{http://www.freedesktop.org/wiki/Software/polkit/, Polkit privilege -management service}, which allows system administrators to grant access to -privileged operations in a structured way. By querying the Polkit service, a -privileged system component can know when it should grant additional -capabilities to ordinary users. For example, an ordinary user can be granted -the capability to suspend the system if the user is logged in locally." - (service polkit-service-type - (polkit-configuration (polkit polkit)))) - - -;;; ;;; Colord D-Bus service. ;;; diff --git a/gnu/services/kerberos.scm b/gnu/services/kerberos.scm index 144c71bba0..a56f63082c 100644 --- a/gnu/services/kerberos.scm +++ b/gnu/services/kerberos.scm @@ -38,15 +38,17 @@ "Return a PAM service for Kerberos authentication." (lambda (pam) (define pam-krb5-module - #~(string-append #$(pam-krb5-configuration-pam-krb5 config) "/lib/security/pam_krb5.so")) + #~(string-append #$(pam-krb5-configuration-pam-krb5 config) + "/lib/security/pam_krb5.so")) (let ((pam-krb5-sufficient (pam-entry (control "sufficient") (module pam-krb5-module) - (arguments (list - (format #f "minimum_uid=~a" - (pam-krb5-configuration-minimum-uid config))))))) + (arguments + (list + (format #f "minimum_uid=~a" + (pam-krb5-configuration-minimum-uid config))))))) (pam-service (inherit pam) (auth (cons* pam-krb5-sufficient diff --git a/gnu/services/mail.scm b/gnu/services/mail.scm index cb0f119f43..c1381405d8 100644 --- a/gnu/services/mail.scm +++ b/gnu/services/mail.scm @@ -21,6 +21,7 @@ (define-module (gnu services mail) #:use-module (gnu services) #:use-module (gnu services base) + #:use-module (gnu services configuration) #:use-module (gnu services shepherd) #:use-module (gnu system pam) #:use-module (gnu system shadow) @@ -30,13 +31,8 @@ #:use-module (guix records) #:use-module (guix packages) #:use-module (guix gexp) - #:use-module (srfi srfi-34) - #:use-module (srfi srfi-35) #:use-module (ice-9 match) - #:export (&dovecot-configuation-error - dovecot-configuration-error? - - dovecot-service + #:export (dovecot-service dovecot-service-type dovecot-configuration opaque-dovecot-configuration @@ -51,7 +47,12 @@ protocol-configuration plugin-configuration mailbox-configuration - namespace-configuration)) + namespace-configuration + + opensmtpd-configuration + opensmtpd-configuration? + opensmtpd-service-type + %default-opensmtpd-config-file)) ;;; Commentary: ;;; @@ -60,112 +61,6 @@ ;;; ;;; Code: -(define-condition-type &dovecot-configuration-error &error - dovecot-configuration-error?) - -(define (dovecot-error message) - (raise (condition (&message (message message)) - (&dovecot-configuration-error)))) -(define (dovecot-configuration-field-error field val) - (dovecot-error - (format #f "Invalid value for field ~a: ~s" field val))) -(define (dovecot-configuration-missing-field kind field) - (dovecot-error - (format #f "~a configuration missing required field ~a" kind field))) - -(define-record-type* <configuration-field> - configuration-field make-configuration-field configuration-field? - (name configuration-field-name) - (type configuration-field-type) - (getter configuration-field-getter) - (predicate configuration-field-predicate) - (serializer configuration-field-serializer) - (default-value-thunk configuration-field-default-value-thunk) - (documentation configuration-field-documentation)) - -(define-syntax define-configuration - (lambda (stx) - (define (id ctx part . parts) - (let ((part (syntax->datum part))) - (datum->syntax - ctx - (match parts - (() part) - (parts (symbol-append part - (syntax->datum (apply id ctx parts)))))))) - (syntax-case stx () - ((_ stem (field (field-type def) doc) ...) - (with-syntax (((field-getter ...) - (map (lambda (field) - (id #'stem #'stem #'- field)) - #'(field ...))) - ((field-predicate ...) - (map (lambda (type) - (id #'stem type #'?)) - #'(field-type ...))) - ((field-serializer ...) - (map (lambda (type) - (id #'stem #'serialize- type)) - #'(field-type ...)))) - #`(begin - (define-record-type* #,(id #'stem #'< #'stem #'>) - stem #,(id #'stem #'make- #'stem) #,(id #'stem #'stem #'?) - (field field-getter (default def)) - ...) - (define #,(id #'stem #'stem #'-fields) - (list (configuration-field - (name 'field) - (type 'field-type) - (getter field-getter) - (predicate field-predicate) - (serializer field-serializer) - (default-value-thunk (lambda () def)) - (documentation doc)) - ...)))))))) - -(define (serialize-configuration config fields) - (for-each (lambda (field) - ((configuration-field-serializer field) - (configuration-field-name field) - ((configuration-field-getter field) config))) - fields)) - -(define (validate-configuration config fields) - (for-each (lambda (field) - (let ((val ((configuration-field-getter field) config))) - (unless ((configuration-field-predicate field) val) - (dovecot-configuration-field-error - (configuration-field-name field) val)))) - fields)) - -(define (validate-package field-name package) - (unless (package? package) - (dovecot-configuration-field-error field-name package))) - -(define (uglify-field-name field-name) - (let ((str (symbol->string field-name))) - (string-join (string-split (if (string-suffix? "?" str) - (substring str 0 (1- (string-length str))) - str) - #\-) - "_"))) - -(define (serialize-package field-name val) - #f) - -(define (serialize-field field-name val) - (format #t "~a=~a\n" (uglify-field-name field-name) val)) - -(define (serialize-string field-name val) - (serialize-field field-name val)) - -(define (space-separated-string-list? val) - (and (list? val) - (and-map (lambda (x) - (and (string? x) (not (string-index x #\space)))) - val))) -(define (serialize-space-separated-string-list field-name val) - (serialize-field field-name (string-join val " "))) (define (comma-separated-string-list? val) (and (list? val) @@ -175,12 +70,6 @@ (define (serialize-comma-separated-string-list field-name val) (serialize-field field-name (string-join val ","))) -(define (file-name? val) - (and (string? val) - (string-prefix? "/" val))) -(define (serialize-file-name field-name val) - (serialize-string field-name val)) - (define (colon-separated-file-name-list? val) (and (list? val) ;; Trailing slashes not needed and not @@ -188,9 +77,6 @@ (define (serialize-colon-separated-file-name-list field-name val) (serialize-field field-name (string-join val ":"))) -(define (serialize-boolean field-name val) - (serialize-string field-name (if val "yes" "no"))) - (define (non-negative-integer? val) (and (exact-integer? val) (not (negative? val)))) (define (serialize-non-negative-integer field-name val) @@ -271,7 +157,7 @@ (define-configuration unix-listener-configuration (path - (file-name (dovecot-configuration-missing-field 'unix-listener 'path)) + (file-name (configuration-missing-field 'unix-listener 'path)) "The file name on which to listen.") (mode (string "0600") @@ -290,7 +176,7 @@ (define-configuration fifo-listener-configuration (path - (file-name (dovecot-configuration-missing-field 'fifo-listener 'path)) + (file-name (configuration-missing-field 'fifo-listener 'path)) "The file name on which to listen.") (mode (string "0600") @@ -309,14 +195,14 @@ (define-configuration inet-listener-configuration (protocol - (string (dovecot-configuration-missing-field 'inet-listener 'protocol)) + (string (configuration-missing-field 'inet-listener 'protocol)) "The protocol to listen for.") (address (string "") "The address on which to listen, or empty for all addresses.") (port (non-negative-integer - (dovecot-configuration-missing-field 'inet-listener 'port)) + (configuration-missing-field 'inet-listener 'port)) "The port on which to listen.") (ssl? (boolean #t) @@ -340,7 +226,7 @@ (serialize-fifo-listener-configuration field-name val)) ((inet-listener-configuration? val) (serialize-inet-listener-configuration field-name val)) - (else (dovecot-configuration-field-error field-name val)))) + (else (configuration-field-error field-name val)))) (define (listener-configuration-list? val) (and (list? val) (and-map listener-configuration? val))) (define (serialize-listener-configuration-list field-name val) @@ -350,7 +236,7 @@ (define-configuration service-configuration (kind - (string (dovecot-configuration-missing-field 'service 'kind)) + (string (configuration-missing-field 'service 'kind)) "The service kind. Valid values include @code{director}, @code{imap-login}, @code{pop3-login}, @code{lmtp}, @code{imap}, @code{pop3}, @code{auth}, @code{auth-worker}, @code{dict}, @@ -388,7 +274,7 @@ this.")) (define-configuration protocol-configuration (name - (string (dovecot-configuration-missing-field 'protocol 'name)) + (string (configuration-missing-field 'protocol 'name)) "The name of the protocol.") (auth-socket-path (string "/var/run/dovecot/auth-userdb") @@ -1492,8 +1378,8 @@ greyed out, instead of only later giving \"not selectable\" popup error. "The dovecot package.") (string - (string (dovecot-configuration-missing-field 'opaque-dovecot-configuration - 'string)) + (string (configuration-missing-field 'opaque-dovecot-configuration + 'string)) "The contents of the @code{dovecot.conf} to use.")) (define %dovecot-accounts @@ -1629,8 +1515,8 @@ by @code{dovecot-configuration}. @var{config} may also be created by (service dovecot-service-type config)) ;; A little helper to make it easier to document all those fields. -(define (generate-documentation) - (define documentation +(define (generate-dovecot-documentation) + (generate-documentation `((dovecot-configuration ,dovecot-configuration-fields (dict dict-configuration) @@ -1655,39 +1541,80 @@ by @code{dovecot-configuration}. @var{config} may also be created by ,service-configuration-fields (listeners unix-listener-configuration fifo-listener-configuration inet-listener-configuration)) - (protocol-configuration ,protocol-configuration-fields))) - (define (generate configuration-name) - (match (assq-ref documentation configuration-name) - ((fields . sub-documentation) - (format #t "\nAvailable @code{~a} fields are:\n\n" configuration-name) - (for-each - (lambda (f) - (let ((field-name (configuration-field-name f)) - (field-type (configuration-field-type f)) - (field-docs (string-trim-both - (configuration-field-documentation f))) - (default (catch #t - (configuration-field-default-value-thunk f) - (lambda _ 'nope)))) - (define (escape-chars str chars escape) - (with-output-to-string - (lambda () - (string-for-each (lambda (c) - (when (char-set-contains? chars c) - (display escape)) - (display c)) - str)))) - (define (show-default? val) - (or (string? default) (number? default) (boolean? default) - (and (list? val) (and-map show-default? val)))) - (format #t "@deftypevr {@code{~a} parameter} ~a ~a\n~a\n" - configuration-name field-type field-name field-docs) - (when (show-default? default) - (format #t "Defaults to @samp{~a}.\n" - (escape-chars (format #f "~s" default) - (char-set #\@ #\{ #\}) - #\@))) - (for-each generate (or (assq-ref sub-documentation field-name) '())) - (format #t "@end deftypevr\n\n"))) - fields)))) - (generate 'dovecot-configuration)) + (protocol-configuration ,protocol-configuration-fields)) + 'dovecot-configuration)) + + +;;; +;;; OpenSMTPD. +;;; + +(define-record-type* <opensmtpd-configuration> + opensmtpd-configuration make-opensmtpd-configuration + opensmtpd-configuration? + (package opensmtpd-configuration-package + (default opensmtpd)) + (config-file opensmtpd-configuration-config-file + (default %default-opensmtpd-config-file))) + +(define %default-opensmtpd-config-file + (plain-file "smtpd.conf" " +listen on lo +accept from any for local deliver to mbox +accept from local for any relay +")) + +(define opensmtpd-shepherd-service + (match-lambda + (($ <opensmtpd-configuration> package config-file) + (list (shepherd-service + (provision '(smtpd)) + (requirement '(loopback)) + (documentation "Run the OpenSMTPD daemon.") + (start (let ((smtpd (file-append package "/sbin/smtpd"))) + #~(make-forkexec-constructor + (list #$smtpd "-f" #$config-file) + #:pid-file "/var/run/smtpd.pid"))) + (stop #~(make-kill-destructor))))))) + +(define %opensmtpd-accounts + (list (user-group + (name "smtpq") + (system? #t)) + (user-account + (name "smtpd") + (group "nogroup") + (system? #t) + (comment "SMTP Daemon") + (home-directory "/var/empty") + (shell (file-append shadow "/sbin/nologin"))) + (user-account + (name "smtpq") + (group "smtpq") + (system? #t) + (comment "SMTPD Queue") + (home-directory "/var/empty") + (shell (file-append shadow "/sbin/nologin"))))) + +(define opensmtpd-activation + (match-lambda + (($ <opensmtpd-configuration> package config-file) + (let ((smtpd (file-append package "/sbin/smtpd"))) + #~(begin + ;; Create mbox and spool directories. + (mkdir-p "/var/mail") + (mkdir-p "/var/spool/smtpd") + (chmod "/var/spool/smtpd" #o711)))))) + +(define opensmtpd-service-type + (service-type + (name 'opensmtpd) + (extensions + (list (service-extension account-service-type + (const %opensmtpd-accounts)) + (service-extension activation-service-type + opensmtpd-activation) + (service-extension profile-service-type + (compose list opensmtpd-configuration-package)) + (service-extension shepherd-root-service-type + opensmtpd-shepherd-service))))) diff --git a/gnu/services/networking.scm b/gnu/services/networking.scm index 5a83240d77..bbb9053008 100644 --- a/gnu/services/networking.scm +++ b/gnu/services/networking.scm @@ -682,7 +682,7 @@ and @command{wicd-curses} user interfaces." (list (shepherd-service (documentation "Run the NetworkManager.") (provision '(networking)) - (requirement '(user-processes dbus-system loopback)) + (requirement '(user-processes dbus-system wpa-supplicant loopback)) (start #~(make-forkexec-constructor (list (string-append #$network-manager "/sbin/NetworkManager") @@ -695,6 +695,7 @@ and @command{wicd-curses} user interfaces." (list (service-extension shepherd-root-service-type network-manager-shepherd-service) (service-extension dbus-root-service-type list) + (service-extension polkit-service-type list) (service-extension activation-service-type (const %network-manager-activation)) ;; Add network-manager to the system profile. diff --git a/gnu/services/web.scm b/gnu/services/web.scm index 59e1e54e04..8f6e5bf6b7 100644 --- a/gnu/services/web.scm +++ b/gnu/services/web.scm @@ -72,7 +72,7 @@ (define (config-domain-strings names) "Return a string denoting the nginx config representation of NAMES, a list of domain names." - (string-concatenate + (string-join (map (match-lambda ('default "_") ((? string? str) str)) @@ -81,7 +81,7 @@ of domain names." (define (config-index-strings names) "Return a string denoting the nginx config representation of NAMES, a list of index files." - (string-concatenate + (string-join (map (match-lambda ((? string? str) str)) names))) diff --git a/gnu/system/examples/desktop.tmpl b/gnu/system/examples/desktop.tmpl index 2fcf90f8b1..21b4563b53 100644 --- a/gnu/system/examples/desktop.tmpl +++ b/gnu/system/examples/desktop.tmpl @@ -1,9 +1,10 @@ ;; This is an operating system configuration template -;; for a "desktop" setup with GNOME and Xfce. +;; for a "desktop" setup with GNOME and Xfce where the +;; root partition is encrypted with LUKS. (use-modules (gnu) (gnu system nss)) (use-service-modules desktop) -(use-package-modules certs) +(use-package-modules certs gnome) (operating-system (host-name "antelope") @@ -13,11 +14,21 @@ ;; Assuming /dev/sdX is the target hard disk, and "my-root" ;; is the label of the target root file system. (bootloader (grub-configuration (device "/dev/sdX"))) + + ;; Specify a mapped device for the encrypted root partition. + ;; The UUID is that returned by 'cryptsetup luksUUID'. + (mapped-devices + (list (mapped-device + (source (uuid "12345678-1234-1234-1234-123456789abc")) + (target "the-root-device") + (type luks-device-mapping)))) + (file-systems (cons (file-system (device "my-root") (title 'label) (mount-point "/") - (type "ext4")) + (type "ext4") + (dependencies mapped-devices)) %base-file-systems)) (users (cons (user-account @@ -31,6 +42,7 @@ ;; This is where we specify system-wide packages. (packages (cons* nss-certs ;for HTTPS access + gvfs ;for user mounts %base-packages)) ;; Add GNOME and/or Xfce---we can choose at the log-in diff --git a/gnu/system/mapped-devices.scm b/gnu/system/mapped-devices.scm index e44f2693a7..8ab861bf73 100644 --- a/gnu/system/mapped-devices.scm +++ b/gnu/system/mapped-devices.scm @@ -23,7 +23,7 @@ #:use-module (guix modules) #:use-module (gnu services) #:use-module (gnu services shepherd) - #:autoload (gnu packages cryptsetup) (cryptsetup) + #:autoload (gnu packages cryptsetup) (cryptsetup-static) #:autoload (gnu packages linux) (mdadm-static) #:use-module (srfi srfi-1) #:use-module (ice-9 match) @@ -104,7 +104,9 @@ ((gnu build file-systems) #:select (find-partition-by-luks-uuid))) - (zero? (system* (string-append #$cryptsetup "/sbin/cryptsetup") + ;; Use 'cryptsetup-static', not 'cryptsetup', to avoid pulling the + ;; whole world inside the initrd (for when we're in an initrd). + (zero? (system* #$(file-append cryptsetup-static "/sbin/cryptsetup") "open" "--type" "luks" ;; Note: We cannot use the "UUID=source" syntax here @@ -120,7 +122,7 @@ (define (close-luks-device source target) "Return a gexp that closes TARGET, a LUKS device." - #~(zero? (system* (string-append #$cryptsetup "/sbin/cryptsetup") + #~(zero? (system* #$(file-append cryptsetup-static "/sbin/cryptsetup") "close" #$target))) (define luks-device-mapping diff --git a/gnu/tests/base.scm b/gnu/tests/base.scm index 9a265309c0..6370d6951b 100644 --- a/gnu/tests/base.scm +++ b/gnu/tests/base.scm @@ -31,6 +31,8 @@ #:use-module (gnu services mcron) #:use-module (gnu services shepherd) #:use-module (gnu services networking) + #:use-module (gnu packages imagemagick) + #:use-module (gnu packages ocr) #:use-module (guix gexp) #:use-module (guix store) #:use-module (guix monads) @@ -65,10 +67,16 @@ %base-user-accounts)))) -(define* (run-basic-test os command #:optional (name "basic")) +(define* (run-basic-test os command #:optional (name "basic") + #:key initialization) "Return a derivation called NAME that tests basic features of the OS started using COMMAND, a gexp that evaluates to a list of strings. Compare some -properties of running system to what's declared in OS, an <operating-system>." +properties of running system to what's declared in OS, an <operating-system>. + +When INITIALIZATION is true, it must be a one-argument procedure that is +passed a gexp denoting the marionette, and it must return gexp that is +inserted before the first test. This is used to introduce an extra +initialization step, such as entering a LUKS passphrase." (define test (with-imported-modules '((gnu build marionette)) #~(begin @@ -86,6 +94,9 @@ properties of running system to what's declared in OS, an <operating-system>." (test-begin "basic") + #$(and initialization + (initialization #~marionette)) + (test-assert "uname" (match (marionette-eval '(uname) marionette) (#("Linux" host-name version _ architecture) @@ -188,14 +199,8 @@ info --version") (test-equal "locale" "en_US.utf8" - (marionette-eval '(begin - ;; XXX: This 'setenv' call wouldn't be needed - ;; but our glibc@2.23 currently ignores - ;; /run/current-system/locale. - (setenv "GUIX_LOCPATH" - "/run/current-system/locale") - (let ((before (setlocale LC_ALL "en_US.utf8"))) - (setlocale LC_ALL before))) + (marionette-eval '(let ((before (setlocale LC_ALL "en_US.utf8"))) + (setlocale LC_ALL before)) marionette)) (test-assert "/run/current-system is a GC root" @@ -241,6 +246,20 @@ info --version") marionette) (file-exists? "tty1.ppm"))) + (test-assert "screen text" + (let ((text (marionette-screen-text marionette + #:ocrad + #$(file-append ocrad + "/bin/ocrad")))) + ;; Check whether the welcome message and shell prompt are + ;; displayed. Note: OCR confuses "y" and "V" for instance, so + ;; we cannot reliably match the whole text. + (and (string-contains text "This is the GNU") + (string-contains text + (string-append + "root@" + #$(operating-system-host-name os)))))) + (test-end) (exit (= (test-runner-fail-count (test-runner-current)) 0))))) diff --git a/gnu/tests/install.scm b/gnu/tests/install.scm index 98f8649af8..4779b80e94 100644 --- a/gnu/tests/install.scm +++ b/gnu/tests/install.scm @@ -24,6 +24,7 @@ #:use-module (gnu system install) #:use-module (gnu system vm) #:use-module ((gnu build vm) #:select (qemu-command)) + #:use-module (gnu packages ocr) #:use-module (gnu packages qemu) #:use-module (gnu packages package-management) #:use-module (guix store) @@ -198,8 +199,15 @@ IMAGE, a disk image. The QEMU VM is has access to MEMORY-SIZE MiB of RAM." (mlet %store-monad ((system (current-system))) (return #~(let ((image #$image)) ;; First we need a writable copy of the image. - (format #t "copying image '~a'...~%" image) - (copy-file image "disk.img") + (format #t "creating writable image from '~a'...~%" image) + (unless (zero? (system* #+(file-append qemu-minimal + "/bin/qemu-img") + "create" "-f" "qcow2" + "-o" + (string-append "backing_file=" image) + "disk.img")) + (error "failed to create writable QEMU image" image)) + (chmod "disk.img" #o644) `(,(string-append #$qemu-minimal "/bin/" #$(qemu-command system)) @@ -398,17 +406,20 @@ by 'mdadm'.") (locale "en_US.UTF-8") (bootloader (grub-configuration (device "/dev/vdb"))) - (kernel-arguments '("console=ttyS0")) + + ;; Note: Do not pass "console=ttyS0" so we can use our passphrase prompt + ;; detection logic in 'enter-luks-passphrase'. + + (mapped-devices (list (mapped-device + (source (uuid "12345678-1234-1234-1234-123456789abc")) + (target "the-root-device") + (type luks-device-mapping)))) (file-systems (cons (file-system (device "/dev/mapper/the-root-device") (title 'device) (mount-point "/") (type "ext4")) %base-file-systems)) - (mapped-devices (list (mapped-device - (source "REPLACE-WITH-LUKS-UUID") - (target "the-root-device") - (type luks-device-mapping)))) (users (cons (user-account (name "charlie") (group "users") @@ -435,7 +446,8 @@ parted --script /dev/vdb mklabel gpt \\ mkpart primary ext2 3M 1G \\ set 1 boot on \\ set 1 bios_grub on -echo -n thepassphrase | cryptsetup luksFormat -q /dev/vdb2 - +echo -n thepassphrase | \\ + cryptsetup luksFormat --uuid=12345678-1234-1234-1234-123456789abc -q /dev/vdb2 - echo -n thepassphrase | \\ cryptsetup open --type luks --key-file - /dev/vdb2 the-root-device mkfs.ext4 -L my-root /dev/mapper/the-root-device @@ -443,15 +455,53 @@ mount LABEL=my-root /mnt herd start cow-store /mnt mkdir /mnt/etc cp /etc/target-config.scm /mnt/etc/config.scm -cat /mnt/etc/config -luks_uuid=`cryptsetup luksUUID /dev/vdb2` -sed -i /mnt/etc/config.scm \\ - -e \"s/\\\"REPLACE-WITH-LUKS-UUID\\\"/(uuid \\\"$luks_uuid\\\")/g\" guix system build /mnt/etc/config.scm guix system init /mnt/etc/config.scm /mnt --no-substitutes sync reboot\n") +(define (enter-luks-passphrase marionette) + "Return a gexp to be inserted in the basic system test running on MARIONETTE +to enter the LUKS passphrase." + (let ((ocrad (file-append ocrad "/bin/ocrad"))) + #~(begin + (define (passphrase-prompt? text) + (string-contains (pk 'screen-text text) "Enter pass")) + + (define (bios-boot-screen? text) + ;; Return true if TEXT corresponds to the boot screen, before GRUB's + ;; menu. + (string-prefix? "SeaBIOS" text)) + + (test-assert "enter LUKS passphrase for GRUB" + (begin + ;; At this point we have no choice but to use OCR to determine + ;; when the passphrase should be entered. + (wait-for-screen-text #$marionette passphrase-prompt? + #:ocrad #$ocrad) + (marionette-type "thepassphrase\n" #$marionette) + + ;; Now wait until we leave the boot screen. This is necessary so + ;; we can then be sure we match the "Enter passphrase" prompt from + ;; 'cryptsetup', in the initrd. + (wait-for-screen-text #$marionette (negate bios-boot-screen?) + #:ocrad #$ocrad + #:timeout 20))) + + (test-assert "enter LUKS passphrase for the initrd" + (begin + ;; XXX: Here we use OCR as well but we could instead use QEMU + ;; '-serial stdio' and run it in an input pipe, + (wait-for-screen-text #$marionette passphrase-prompt? + #:ocrad #$ocrad + #:timeout 60) + (marionette-type "thepassphrase\n" #$marionette) + + ;; Take a screenshot for debugging purposes. + (marionette-control (string-append "screendump " #$output + "/post-initrd-passphrase.ppm") + #$marionette)))))) + (define %test-encrypted-os (system-test (name "encrypted-root-os") @@ -465,6 +515,7 @@ build (current-guix) and then store a couple of full system images.") #:script %encrypted-root-installation-script)) (command (qemu-command/writable-image image))) - (run-basic-test %encrypted-root-os command "encrypted-root-os"))))) + (run-basic-test %encrypted-root-os command "encrypted-root-os" + #:initialization enter-luks-passphrase))))) ;;; install.scm ends here diff --git a/gnu/tests/mail.scm b/gnu/tests/mail.scm new file mode 100644 index 0000000000..47328a54ae --- /dev/null +++ b/gnu/tests/mail.scm @@ -0,0 +1,159 @@ +;;; GNU Guix --- Functional package management for GNU +;;; Copyright © 2016 Sou Bunnbu <iyzsong@member.fsf.org> +;;; +;;; This file is part of GNU Guix. +;;; +;;; GNU Guix is free software; you can redistribute it and/or modify it +;;; under the terms of the GNU General Public License as published by +;;; the Free Software Foundation; either version 3 of the License, or (at +;;; your option) any later version. +;;; +;;; GNU Guix is distributed in the hope that it will be useful, but +;;; WITHOUT ANY WARRANTY; without even the implied warranty of +;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +;;; GNU General Public License for more details. +;;; +;;; You should have received a copy of the GNU General Public License +;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. + +(define-module (gnu tests mail) + #:use-module (gnu tests) + #:use-module (gnu system) + #:use-module (gnu system file-systems) + #:use-module (gnu system grub) + #:use-module (gnu system vm) + #:use-module (gnu services) + #:use-module (gnu services base) + #:use-module (gnu services mail) + #:use-module (gnu services networking) + #:use-module (guix gexp) + #:use-module (guix monads) + #:use-module (guix store) + #:export (%test-opensmtpd)) + +(define %opensmtpd-os + (operating-system + (host-name "komputilo") + (timezone "Europe/Berlin") + (locale "en_US.UTF-8") + (bootloader (grub-configuration (device #f))) + (file-systems %base-file-systems) + (firmware '()) + (services (cons* + (dhcp-client-service) + (service opensmtpd-service-type + (opensmtpd-configuration + (config-file + (plain-file "smtpd.conf" " +listen on 0.0.0.0 +accept from any for local deliver to mbox +")))) + %base-services)))) + +(define (run-opensmtpd-test) + "Return a test of an OS running OpenSMTPD service." + (mlet* %store-monad ((command (system-qemu-image/shared-store-script + (marionette-operating-system + %opensmtpd-os + #:imported-modules '((gnu services herd))) + #:graphic? #f))) + (define test + (with-imported-modules '((gnu build marionette)) + #~(begin + (use-modules (rnrs base) + (srfi srfi-64) + (ice-9 rdelim) + (ice-9 regex) + (gnu build marionette)) + + (define marionette + (make-marionette + ;; Enable TCP forwarding of the guest's port 25. + '(#$command "-net" "user,hostfwd=tcp::1025-:25"))) + + (define (read-reply-code port) + "Read a SMTP reply from PORT and return its reply code." + (let* ((line (read-line port)) + (mo (string-match "([0-9]+)([ -]).*" line)) + (code (string->number (match:substring mo 1))) + (finished? (string= " " (match:substring mo 2)))) + (if finished? + code + (read-reply-code port)))) + + (mkdir #$output) + (chdir #$output) + + (test-begin "opensmptd") + + (test-assert "service is running" + (marionette-eval + '(begin + (use-modules (gnu services herd)) + (start-service 'smtpd) + #t) + marionette)) + + (test-assert "mbox is empty" + (marionette-eval + '(and (file-exists? "/var/mail") + (not (file-exists? "/var/mail/root"))) + marionette)) + + (test-eq "accept an email" + #t + (let* ((smtp (socket AF_INET SOCK_STREAM 0)) + (addr (make-socket-address AF_INET INADDR_LOOPBACK 1025))) + (connect smtp addr) + ;; Be greeted. + (read-reply-code smtp) ;220 + ;; Greet the server. + (write-line "EHLO somehost" smtp) + (read-reply-code smtp) ;250 + ;; Set sender email. + (write-line "MAIL FROM: <someone>" smtp) + (read-reply-code smtp) ;250 + ;; Set recipient email. + (write-line "RCPT TO: <root>" smtp) + (read-reply-code smtp) ;250 + ;; Send message. + (write-line "DATA" smtp) + (read-reply-code smtp) ;354 + (write-line "Subject: Hello" smtp) + (newline smtp) + (write-line "Nice to meet you!" smtp) + (write-line "." smtp) + (read-reply-code smtp) ;250 + ;; Say goodbye. + (write-line "QUIT" smtp) + (read-reply-code smtp) ;221 + (close smtp) + #t)) + + (test-assert "mail arrived" + (marionette-eval + '(begin + (use-modules (ice-9 popen) + (ice-9 rdelim)) + + (define (queue-empty?) + (eof-object? + (read-line + (open-input-pipe "smtpctl show queue")))) + + (let wait () + (if (queue-empty?) + (file-exists? "/var/mail/root") + (begin (sleep 1) (wait))))) + marionette)) + + (test-end) + (exit (= (test-runner-fail-count (test-runner-current)) 0))))) + + (gexp->derivation "opensmtpd-test" test))) + +(define %test-opensmtpd + (system-test + (name "opensmtpd") + (description "Send an email to a running OpenSMTPD server.") + (value (run-opensmtpd-test)))) |