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| author | Ben Woodcroft <donttrustben@gmail.com> | 2017-04-06 22:51:26 +1000 |
|---|---|---|
| committer | Ben Woodcroft <donttrustben@gmail.com> | 2017-07-23 10:29:34 +1000 |
| commit | 4ab1644049ad2d1cf7a997dfa910a4d7d646e49f (patch) | |
| tree | 65fda12ca311105198a217c989272b8b59df49b0 /gnu | |
| parent | a9e4a1e641c3d24ce2aab65546dcac1fd9c37e47 (diff) | |
| download | patches-4ab1644049ad2d1cf7a997dfa910a4d7d646e49f.tar patches-4ab1644049ad2d1cf7a997dfa910a4d7d646e49f.tar.gz | |
gnu: samtools: Update to 1.4.1.
* gnu/packages/bioinformatics.scm (samtools): Update to 1.4.1.
[arguments]: Add '--with-htslib=system' configure flag.
[inputs]: Add htslib.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 16 |
1 files changed, 9 insertions, 7 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 97a58a5371..f5122a1802 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4516,7 +4516,7 @@ to the user's query of interest.") (define-public samtools (package (name "samtools") - (version "1.3.1") + (version "1.4.1") (source (origin (method url-fetch) @@ -4525,7 +4525,7 @@ to the user's query of interest.") version "/samtools-" version ".tar.bz2")) (sha256 (base32 - "0znnnxc467jbf1as2dpskrjhfh8mbll760j6w6rdkwlwbqsp8gbc")))) + "0vzxjm5vkgvzynl7cssm1l560rqs2amdaib1x8sp2ch9b7bxx9xx")))) (build-system gnu-build-system) (arguments `(#:modules ((ice-9 ftw) @@ -4533,7 +4533,7 @@ to the user's query of interest.") (guix build gnu-build-system) (guix build utils)) #:make-flags (list (string-append "prefix=" (assoc-ref %outputs "out"))) - #:configure-flags (list "--with-ncurses") + #:configure-flags (list "--with-ncurses" "--with-htslib=system") #:phases (modify-phases %standard-phases (add-after 'unpack 'patch-tests @@ -4556,10 +4556,12 @@ to the user's query of interest.") (scandir "." (lambda (name) (string-match "\\.h$" name)))) #t)))))) (native-inputs `(("pkg-config" ,pkg-config))) - (inputs `(("ncurses" ,ncurses) - ("perl" ,perl) - ("python" ,python) - ("zlib" ,zlib))) + (inputs + `(("htslib" ,htslib) + ("ncurses" ,ncurses) + ("perl" ,perl) + ("python" ,python) + ("zlib" ,zlib))) (home-page "http://samtools.sourceforge.net") (synopsis "Utilities to efficiently manipulate nucleotide sequence alignments") (description |