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| author | Ben Woodcroft <donttrustben@gmail.com> | 2017-09-01 13:59:28 +0800 |
|---|---|---|
| committer | Ben Woodcroft <donttrustben@gmail.com> | 2017-09-01 14:45:57 +0800 |
| commit | 25bd1fc1c12ee2dfbcb12daf36f25285a4f7e55a (patch) | |
| tree | 66f18221eb81df3d0b258e7f666fd8ae7a0d0091 /gnu | |
| parent | 43d01672a11814ca4cdcc592544064d75d1653f0 (diff) | |
| download | patches-25bd1fc1c12ee2dfbcb12daf36f25285a4f7e55a.tar patches-25bd1fc1c12ee2dfbcb12daf36f25285a4f7e55a.tar.gz | |
gnu: metabat: Update to 2.12.1.
* gnu/packages/patches/metabat-remove-compilation-date.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/bioinformatics.scm (metabat): Update to 2.12.1.
[source]: Remove it. Use url-fetch.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/local.mk | 1 | ||||
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 16 | ||||
| -rw-r--r-- | gnu/packages/patches/metabat-remove-compilation-date.patch | 16 |
3 files changed, 7 insertions, 26 deletions
diff --git a/gnu/local.mk b/gnu/local.mk index 2e40026e53..8c683b8e42 100644 --- a/gnu/local.mk +++ b/gnu/local.mk @@ -846,7 +846,6 @@ dist_patch_DATA = \ %D%/packages/patches/mcrypt-CVE-2012-4527.patch \ %D%/packages/patches/mesa-skip-disk-cache-test.patch \ %D%/packages/patches/mesa-wayland-egl-symbols-check-mips.patch \ - %D%/packages/patches/metabat-remove-compilation-date.patch \ %D%/packages/patches/metabat-fix-compilation.patch \ %D%/packages/patches/mhash-keygen-test-segfault.patch \ %D%/packages/patches/mingw-w64-5.0rc2-gcc-4.9.3.patch \ diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 70418cd977..37980f3756 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3475,19 +3475,17 @@ form of assemblies or reads.") (define-public metabat (package (name "metabat") - (version "2.11.3") + (version "2.12.1") (source (origin - (method git-fetch) - (uri (git-reference - (url "https://bitbucket.org/berkeleylab/metabat.git") - (commit "d0ad65367ffc8e08d1a9dd1388d6170daa047e5c"))) - (file-name (string-append name "-" version "-checkout")) + (method url-fetch) + (uri (string-append "https://bitbucket.org/berkeleylab/metabat/get/v" + version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) (sha256 (base32 - "1rlsrkz8iq8xah65222p055kzv5i3szz8bwysnvnh0pv72wvv6ww")) - (patches (search-patches "metabat-remove-compilation-date.patch" - "metabat-fix-compilation.patch")))) + "1hmvdalz3zj5sqqklg0l4npjdv37cv2hsdi1al9iby2ndxjs1b73")) + (patches (search-patches "metabat-fix-compilation.patch")))) (build-system gnu-build-system) (arguments `(#:phases diff --git a/gnu/packages/patches/metabat-remove-compilation-date.patch b/gnu/packages/patches/metabat-remove-compilation-date.patch deleted file mode 100644 index 7672205b22..0000000000 --- a/gnu/packages/patches/metabat-remove-compilation-date.patch +++ /dev/null @@ -1,16 +0,0 @@ -Remove the reference to the compilation date so that the build is -reproducible. - -diff --git a/src/metabat.cpp b/src/metabat.cpp -index 88e06de..c95cb1a 100644 ---- a/src/metabat.cpp -+++ b/src/metabat.cpp -@@ -49,7 +49,7 @@ int main(int ac, char* av[]) { - po::notify(vm); - - if (vm.count("help") || inFile.length() == 0 || outFile.length() == 0) { -- cerr << "\nMetaBAT: Metagenome Binning based on Abundance and Tetranucleotide frequency (version " << version << "; " << __DATE__ << " " << __TIME__ << ")" << endl; -+ cerr << "\nMetaBAT: Metagenome Binning based on Abundance and Tetranucleotide frequency (version " << version << "; unknown compilation date)" << endl; - cerr << "by Don Kang (ddkang@lbl.gov), Jeff Froula, Rob Egan, and Zhong Wang (zhongwang@lbl.gov) \n" << endl; - cerr << desc << endl << endl; - |