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| author | Ricardo Wurmus <rekado@elephly.net> | 2017-12-06 19:12:16 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2017-12-06 19:13:35 +0100 |
| commit | 0d9824cc127f045d32c22d0c75df46d97cb61624 (patch) | |
| tree | 4332b2b127f0d4eefab9cc31e50020f6b9430b4b /gnu | |
| parent | 7bcfb590a6d25fb4f675f0ab5cf743d6454729a8 (diff) | |
| download | patches-0d9824cc127f045d32c22d0c75df46d97cb61624.tar patches-0d9824cc127f045d32c22d0c75df46d97cb61624.tar.gz | |
gnu: bedtools: Update to 2.27.0.
* gnu/packages/bioinformatics.scm (bedtools): Update to 2.27.0.
[arguments]: Remove custom "install" phase; specify prefix.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 28 |
1 files changed, 12 insertions, 16 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index f0b589b6c0..fedc8aec4c 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -421,31 +421,27 @@ computational cluster.") (define-public bedtools (package (name "bedtools") - (version "2.26.0") + (version "2.27.0") (source (origin (method url-fetch) - (uri (string-append "https://github.com/arq5x/bedtools2/archive/v" - version ".tar.gz")) - (file-name (string-append name "-" version ".tar.gz")) + (uri (string-append "https://github.com/arq5x/bedtools2/releases/" + "download/v" version "/" + "bedtools-" version ".tar.gz")) (sha256 (base32 - "0xvri5hnp2iim1cx6mcd5d9f102p5ql41x69rd6106x1c17pinqm")))) + "0q6fsiz4s52yzxs6h2vxwq95fsi3n64wkpinkk05mfh4dmhybw74")))) (build-system gnu-build-system) - (native-inputs `(("python" ,python-2))) - (inputs `(("samtools" ,samtools) - ("zlib" ,zlib))) (arguments '(#:test-target "test" + #:make-flags + (list (string-append "prefix=" (assoc-ref %outputs "out"))) #:phases (modify-phases %standard-phases - (delete 'configure) - (replace 'install - (lambda* (#:key outputs #:allow-other-keys) - (let ((bin (string-append (assoc-ref outputs "out") "/bin/"))) - (for-each (lambda (file) - (install-file file bin)) - (find-files "bin" ".*"))) - #t))))) + (delete 'configure)))) + (native-inputs `(("python" ,python-2))) + (inputs + `(("samtools" ,samtools) + ("zlib" ,zlib))) (home-page "https://github.com/arq5x/bedtools2") (synopsis "Tools for genome analysis and arithmetic") (description |