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| author | Ricardo Wurmus <rekado@elephly.net> | 2017-11-07 17:26:00 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2017-11-07 23:32:45 +0100 |
| commit | 30eb4e37c8b24c3e8ecdc1147035d1735816fa94 (patch) | |
| tree | eec9c1a2b69c51b26483625d6d601ea32646edbe /gnu | |
| parent | fbf5440637145a9203219ceecb44e3207f789284 (diff) | |
| download | patches-30eb4e37c8b24c3e8ecdc1147035d1735816fa94.tar patches-30eb4e37c8b24c3e8ecdc1147035d1735816fa94.tar.gz | |
gnu: Add r-fithic.
* gnu/packages/bioinformatics.scm (r-fithic): New variable.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index f53b17b403..60772b576a 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10142,6 +10142,30 @@ EMBL-EBI GWAS catalog.") visualizations for publication-quality multi-panel figures.") (license license:gpl2+))) +(define-public r-fithic + (package + (name "r-fithic") + (version "1.4.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "FitHiC" version)) + (sha256 + (base32 + "12ylhrppi051m7nqsgq95kzd9g9wmp34i0zzfi55cjqawlpx7c6n")))) + (properties `((upstream-name . "FitHiC"))) + (build-system r-build-system) + (propagated-inputs + `(("r-data-table" ,r-data-table) + ("r-fdrtool" ,r-fdrtool) + ("r-rcpp" ,r-rcpp))) + (home-page "https://bioconductor.org/packages/FitHiC") + (synopsis "Confidence estimation for intra-chromosomal contact maps") + (description + "Fit-Hi-C is a tool for assigning statistical confidence estimates to +intra-chromosomal contact maps produced by genome-wide genome architecture +assays such as Hi-C.") + (license license:gpl2+))) + (define-public r-qvalue (package (name "r-qvalue") |