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| author | Roel Janssen <roel@gnu.org> | 2020-04-27 10:24:20 +0200 |
|---|---|---|
| committer | Roel Janssen <roel@gnu.org> | 2020-04-27 10:24:20 +0200 |
| commit | e8d435f7a2919e8f05fc3822d1a43f50c6c5cc8a (patch) | |
| tree | b54ae2acd4c32954fb5afc74f1e1e26f3d75d0ff /gnu | |
| parent | df6c7f04878f9881d805517f77a8dc493edd8a8f (diff) | |
| download | patches-e8d435f7a2919e8f05fc3822d1a43f50c6c5cc8a.tar patches-e8d435f7a2919e8f05fc3822d1a43f50c6c5cc8a.tar.gz | |
gnu: Add r-ideoviz.
* gnu/packages/bioconductor.scm (r-ideoviz): New variable.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 26 |
1 files changed, 25 insertions, 1 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 0fc0d7b839..9540de3b72 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1,6 +1,6 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2016, 2017, 2018, 2019, 2020 Ricardo Wurmus <rekado@elephly.net> -;;; Copyright © 2016, 2017, 2018 Roel Janssen <roel@gnu.org> +;;; Copyright © 2016, 2017, 2018, 2020 Roel Janssen <roel@gnu.org> ;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2019 Simon Tournier <zimon.toutoune@gmail.com> ;;; @@ -718,6 +718,30 @@ annotations.") "This is a manifest package for Illumina's EPIC methylation arrays.") (license license:artistic2.0))) +(define-public r-ideoviz + (package + (name "r-ideoviz") + (version "1.22.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "IdeoViz" version)) + (sha256 + (base32 + "0rsz6dawrx5qdrypxs2hgihmx3kbpdg1y73h876yxccgdlabvzil")))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-iranges" ,r-iranges) + ("r-genomicranges" ,r-genomicranges) + ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-rtracklayer" ,r-rtracklayer) + ("r-genomeinfodb" ,r-genomeinfodb))) + (home-page "https://bioconductor.org/packages/IdeoViz/") + (synopsis "Plots data along a chromosomal ideogram") + (description "This package provides functions to plot data associated with +arbitrary genomic intervals along chromosomal ideogram.") + (license license:gpl2))) + ;; This is a CRAN package, but it depends on r-bsgenome-hsapiens-ucsc-hg19 ;; from Bioconductor. (define-public r-deconstructsigs |