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authorRicardo Wurmus <rekado@elephly.net>2020-04-17 15:49:19 +0200
committerRicardo Wurmus <rekado@elephly.net>2020-04-17 15:53:03 +0200
commitc55beaecd8c5a36052b628cbd429da9ab7803c8d (patch)
tree64d14cf0a40ed0940f5157c1a69d795d15f5b931 /gnu
parent4a085ffc16b25d14d9188d9e2e88baa27f5c7f12 (diff)
downloadpatches-c55beaecd8c5a36052b628cbd429da9ab7803c8d.tar
patches-c55beaecd8c5a36052b628cbd429da9ab7803c8d.tar.gz
gnu: python-cooler: Update to 0.8.7.
* gnu/packages/bioinformatics.scm (python-cooler): Update to 0.8.7. [propagated-inputs]: Add python-asciitree, python-numpy, python-pyyaml, and python-simplejson. [native-inputs]: Remove python-nose, python-numpydoc, and python-sphinx; add python-pytest.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm16
1 files changed, 9 insertions, 7 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 73a1fe119b..6fcabb6f9e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13641,32 +13641,34 @@ fasta subsequences.")
(define-public python-cooler
(package
(name "python-cooler")
- (version "0.7.11")
+ (version "0.8.7")
(source
(origin
(method url-fetch)
(uri (pypi-uri "cooler" version))
(sha256
(base32
- "08k5nxnxa6qsbk15z5z0q01n28042k87wi4905hh95rzqib15mhx"))))
+ "01g6gqix9ba27sappz6nfyiwabzrlf8i5fn8kwcz8ra356cq9crp"))))
(build-system python-build-system)
(propagated-inputs
- `(("python-biopython" ,python-biopython)
+ `(("python-asciitree" ,python-asciitree)
+ ("python-biopython" ,python-biopython)
("python-click" ,python-click)
("python-cytoolz" ,python-cytoolz)
("python-dask" ,python-dask)
("python-h5py" ,python-h5py)
("python-multiprocess" ,python-multiprocess)
+ ("python-numpy" ,python-numpy)
("python-pandas" ,python-pandas)
("python-pyfaidx" ,python-pyfaidx)
("python-pypairix" ,python-pypairix)
("python-pysam" ,python-pysam)
- ("python-scipy" ,python-scipy)))
+ ("python-pyyaml" ,python-pyyaml)
+ ("python-scipy" ,python-scipy)
+ ("python-simplejson" ,python-simplejson)))
(native-inputs
`(("python-mock" ,python-mock)
- ("python-nose" ,python-nose)
- ("python-numpydoc" ,python-numpydoc)
- ("python-sphinx" ,python-sphinx)))
+ ("python-pytest" ,python-pytest)))
(home-page "https://github.com/mirnylab/cooler")
(synopsis "Sparse binary format for genomic interaction matrices")
(description