summaryrefslogtreecommitdiff
path: root/gnu
diff options
context:
space:
mode:
authorRicardo Wurmus <rekado@elephly.net>2017-11-07 15:33:50 +0100
committerRicardo Wurmus <rekado@elephly.net>2017-11-07 23:32:42 +0100
commit7af1f40373e1feb08c2d3901699dae02ca738e86 (patch)
tree27b480eedd1e6fc8defbc4a026ea56ecd40cb27f /gnu
parent2f6f61fd8e9c5e1dbc2c1873f389e3586261d8cb (diff)
downloadpatches-7af1f40373e1feb08c2d3901699dae02ca738e86.tar
patches-7af1f40373e1feb08c2d3901699dae02ca738e86.tar.gz
gnu: Add r-biovizbase.
* gnu/packages/bioinformatics.scm (r-biovizbase): New variable.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm41
1 files changed, 41 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b0738c6573..11be5f92dd 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9675,6 +9675,47 @@ annotation packages each of which has its own schema by taking advantage of
the fact that each of these packages implements a select methods.")
(license license:artistic2.0)))
+(define-public r-biovizbase
+ (package
+ (name "r-biovizbase")
+ (version "1.26.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "biovizBase" version))
+ (sha256
+ (base32
+ "14l4vhj0a4ssr9m9zdzz3qpd4qw1mhgq5bmxq7jhrq3j9kmd6i2f"))))
+ (properties `((upstream-name . "biovizBase")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-annotationfilter" ,r-annotationfilter)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-biostrings" ,r-biostrings)
+ ("r-dichromat" ,r-dichromat)
+ ("r-ensembldb" ,r-ensembldb)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicalignments" ,r-genomicalignments)
+ ("r-genomicfeatures" ,r-genomicfeatures)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-hmisc" ,r-hmisc)
+ ("r-iranges" ,r-iranges)
+ ("r-rcolorbrewer" ,r-rcolorbrewer)
+ ("r-rsamtools" ,r-rsamtools)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-scales" ,r-scales)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)
+ ("r-variantannotation" ,r-variantannotation)))
+ (home-page "https://bioconductor.org/packages/biovizBase")
+ (synopsis "Basic graphic utilities for visualization of genomic data")
+ (description
+ "The biovizBase package is designed to provide a set of utilities, color
+schemes and conventions for genomic data. It serves as the base for various
+high-level packages for biological data visualization. This saves development
+effort and encourages consistency.")
+ (license license:artistic2.0)))
+
(define-public r-qvalue
(package
(name "r-qvalue")