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authorRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2016-03-30 12:24:44 +0200
committerRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2016-04-11 15:11:16 +0200
commit6dc60998534bab0ed267b08025d06883d40670ac (patch)
tree8af8fc76b29b74fffb0c1b1a9d2acd1f0b5fd4ef /gnu
parent943bd6279fd60e6fc4f5b781c1c52315b9c1011c (diff)
downloadpatches-6dc60998534bab0ed267b08025d06883d40670ac.tar
patches-6dc60998534bab0ed267b08025d06883d40670ac.tar.gz
gnu: Add r-bsgenome-dmelanogaster-ucsc-dm3.
* gnu/packages/bioinformatics.scm (r-bsgenome-dmelanogaster-ucsc-dm3): New variable.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm32
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 23dc9d2e2e..da4a2d5eba 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4863,6 +4863,38 @@ elegans (Worm) as provided by UCSC (ce6, May 2008) and stored in Biostrings
objects.")
(license license:artistic2.0)))
+(define-public r-bsgenome-dmelanogaster-ucsc-dm3
+ (package
+ (name "r-bsgenome-dmelanogaster-ucsc-dm3")
+ (version "1.4.0")
+ (source (origin
+ (method url-fetch)
+ ;; We cannot use bioconductor-uri here because this tarball is
+ ;; located under "data/annotation/" instead of "bioc/".
+ (uri (string-append "http://www.bioconductor.org/packages/"
+ "release/data/annotation/src/contrib/"
+ "BSgenome.Dmelanogaster.UCSC.dm3_"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "19bm3lkhhkag3gnwp419211fh0cnr0x6fa0r1lr0ycwrikxdxsv8"))))
+ (properties
+ `((upstream-name . "BSgenome.Dmelanogaster.UCSC.dm3")))
+ (build-system r-build-system)
+ ;; As this package provides little more than a very large data file it
+ ;; doesn't make sense to build substitutes.
+ (arguments `(#:substitutable? #f))
+ (propagated-inputs
+ `(("r-bsgenome" ,r-bsgenome)))
+ (home-page
+ "http://www.bioconductor.org/packages/BSgenome.Dmelanogaster.UCSC.dm3/")
+ (synopsis "Full genome sequences for Fly")
+ (description
+ "This package provides full genome sequences for Drosophila
+melanogaster (Fly) as provided by UCSC (dm3, April 2006) and stored in
+Biostrings objects.")
+ (license license:artistic2.0)))
+
(define-public r-motifrg
(package
(name "r-motifrg")