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authorRicardo Wurmus <rekado@elephly.net>2018-10-21 21:26:35 +0200
committerRicardo Wurmus <rekado@elephly.net>2018-10-21 23:06:46 +0200
commit38622ccd14c5d2df152ff8d72f1f5269afb36565 (patch)
tree29f2e38904934a6b98eaf12b8c62609869c89e13 /gnu
parentc96ca68f31619ed678720fc1dc6bbf0906ce5638 (diff)
downloadpatches-38622ccd14c5d2df152ff8d72f1f5269afb36565.tar
patches-38622ccd14c5d2df152ff8d72f1f5269afb36565.tar.gz
gnu: express-beta-diversity: Update to 1.0.8.
* gnu/packages/bioinformatics.scm (express-beta-diversity): Update to 1.0.8. [source]: Fetch from git. [arguments]: Use INVOKE; remove "exit-source" build phase; simplify.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm31
1 files changed, 13 insertions, 18 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a806fd5f22..9a04118588 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2481,17 +2481,16 @@ ChIP-Seq, and analysis of metagenomic data.")
(define-public express-beta-diversity
(package
(name "express-beta-diversity")
- (version "1.0.7")
+ (version "1.0.8")
(source (origin
- (method url-fetch)
- (uri
- (string-append
- "https://github.com/dparks1134/ExpressBetaDiversity/archive/v"
- version ".tar.gz"))
- (file-name (string-append name "-" version ".tar.gz"))
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/dparks1134/ExpressBetaDiversity.git")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
(sha256
(base32
- "1djvdlmqvjf6h0zq7w36y8cl5cli6rgj86x65znl48agnwmzxfxr"))))
+ "0s0yzg5c21349rh7x4w9266jsvnp7j1hp9cf8sk32hz8nvrj745x"))))
(build-system gnu-build-system)
(arguments
`(#:phases
@@ -2499,17 +2498,13 @@ ChIP-Seq, and analysis of metagenomic data.")
(delete 'configure)
(add-before 'build 'enter-source (lambda _ (chdir "source") #t))
(replace 'check
- (lambda _ (zero? (system* "../bin/ExpressBetaDiversity"
- "-u"))))
- (add-after 'check 'exit-source (lambda _ (chdir "..") #t))
+ (lambda _ (invoke "../bin/ExpressBetaDiversity" "-u") #t))
(replace 'install
- (lambda* (#:key outputs #:allow-other-keys)
- (let ((bin (string-append (assoc-ref outputs "out")
- "/bin")))
- (mkdir-p bin)
- (install-file "scripts/convertToEBD.py" bin)
- (install-file "bin/ExpressBetaDiversity" bin)
- #t))))))
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((bin (string-append (assoc-ref outputs "out") "/bin")))
+ (install-file "../scripts/convertToEBD.py" bin)
+ (install-file "../bin/ExpressBetaDiversity" bin)
+ #t))))))
(inputs
`(("python" ,python-2)))
(home-page "http://kiwi.cs.dal.ca/Software/ExpressBetaDiversity")