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| author | Efraim Flashner <efraim@flashner.co.il> | 2020-04-26 13:22:35 +0300 |
|---|---|---|
| committer | Efraim Flashner <efraim@flashner.co.il> | 2020-04-26 15:03:50 +0300 |
| commit | ee8de7381466ad917d1d2cab49830325230b4e5c (patch) | |
| tree | 5f48628da9abba989810ecfb33a1e44356401dc2 /gnu | |
| parent | 2b829898c77c4f5655db6f70de2b3a51e8f35947 (diff) | |
| download | patches-ee8de7381466ad917d1d2cab49830325230b4e5c.tar patches-ee8de7381466ad917d1d2cab49830325230b4e5c.tar.gz | |
gnu: python-scanpy: Update to 1.4.6.
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.4.6.
[arguments]: Add another network based test to skip.
[propagated-inputs]: Add python-tqdm.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 8 |
1 files changed, 5 insertions, 3 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b9be0c1918..6c5b49e37e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13365,14 +13365,14 @@ in RNA-seq data.") (define-public python-scanpy (package (name "python-scanpy") - (version "1.4.5.1") + (version "1.4.6") (source (origin (method url-fetch) (uri (pypi-uri "scanpy" version)) (sha256 (base32 - "14kh1ji70xxhmri5q8sgcibsidhr6f221wxrcw8a5xvibj5da17j")))) + "0s2b6cvaigx4wzw3850qb93sjwwxbzh22kpbp498zklc5rjpbz4l")))) (build-system python-build-system) (arguments `(#:phases @@ -13382,6 +13382,7 @@ in RNA-seq data.") ;; These tests require Internet access. (delete-file-recursively "scanpy/tests/notebooks") (delete-file "scanpy/tests/test_clustering.py") + (delete-file "scanpy/tests/test_datasets.py") ;; TODO: I can't get the plotting tests to work, even with Xvfb. (delete-file "scanpy/tests/test_plotting.py") @@ -13398,8 +13399,8 @@ in RNA-seq data.") ("python-h5py" ,python-h5py) ("python-igraph" ,python-igraph) ("python-joblib" ,python-joblib) - ("python-louvain" ,python-louvain) ("python-legacy-api-wrap" ,python-legacy-api-wrap) + ("python-louvain" ,python-louvain) ("python-matplotlib" ,python-matplotlib) ("python-natsort" ,python-natsort) ("python-networkx" ,python-networkx) @@ -13412,6 +13413,7 @@ in RNA-seq data.") ("python-seaborn" ,python-seaborn) ("python-statsmodels" ,python-statsmodels) ("python-tables" ,python-tables) + ("python-tqdm" ,python-tqdm) ("python-umap-learn" ,python-umap-learn))) (native-inputs `(("python-pytest" ,python-pytest) |