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| author | pimi <madalinionel.patrascu@mdc-berlin.de> | 2018-09-11 16:54:32 +0200 |
|---|---|---|
| committer | Ludovic Courtès <ludo@gnu.org> | 2018-09-21 17:04:37 +0200 |
| commit | 7e27393f82ff5e7237f870ded09652b89e457faa (patch) | |
| tree | 75094685cdb252aed4a4d049f34d5ba8f582fe02 /gnu | |
| parent | 45201bf245856954cb8368c328e54773a0a81156 (diff) | |
| download | patches-7e27393f82ff5e7237f870ded09652b89e457faa.tar patches-7e27393f82ff5e7237f870ded09652b89e457faa.tar.gz | |
gnu: Add r-pore.
* gnu/packages/bioinformatics.scm (r-pore): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 10330cd8b2..9599e3096f 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13736,3 +13736,32 @@ juicer) and single-resolution or multi-resolution @code{.cool} files (for cooler). Both @code{hic} and @code{cool} files describe Hi-C contact matrices.") (license license:expat))) + +(define-public r-pore + (package + (name "r-pore") + (version "0.24") + (source + (origin + (method url-fetch) + (uri + (string-append "mirror://sourceforge/rpore/" version + "/poRe_" version ".tar.gz")) + (sha256 + (base32 "0pih9nljbv8g4x8rkk29i7aqq681b782r5s5ynp4nw9yzqnmmksv")))) + (properties `((upstream-name . "poRe"))) + (build-system r-build-system) + (propagated-inputs + `(("r-bit64" ,r-bit64) + ("r-data-table" ,r-data-table) + ("r-rhdf5" ,r-rhdf5) + ("r-shiny" ,r-shiny) + ("r-svdialogs" ,r-svdialogs))) + (home-page "https://sourceforge.net/projects/rpore/") + (synopsis "Visualize Nanopore sequencing data") + (description + "This package provides graphical user interfaces to organize and visualize Nanopore +sequencing data.") + ;; This is free software but the license variant is unclear: + ;; <https://github.com/mw55309/poRe_docs/issues/10>. + (license license:bsd-3))) |