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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-06 21:42:39 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-06 21:42:39 +0100 |
| commit | d56df35a259dd1faea7780f4ceff84a9c96c699b (patch) | |
| tree | 88007889408654a1fb46ece3dca41dc9f83284a5 /gnu/packages | |
| parent | f8780e96ff9c4d1439f679aff0df559d97d673dc (diff) | |
| download | patches-d56df35a259dd1faea7780f4ceff84a9c96c699b.tar patches-d56df35a259dd1faea7780f4ceff84a9c96c699b.tar.gz | |
gnu: r-org-hs-eg-db: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-hs-eg-db): ...to here.
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 26 | ||||
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 26 |
2 files changed, 26 insertions, 26 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index f08e1a87c4..7079092335 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -438,6 +438,32 @@ annotations for the genome of the model fruit fly Drosophila melanogaster.") based on mapping using Entrez Gene identifiers.") (license license:artistic2.0))) +(define-public r-org-hs-eg-db + (package + (name "r-org-hs-eg-db") + (version "3.7.0") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "https://www.bioconductor.org/packages/" + "release/data/annotation/src/contrib/" + "org.Hs.eg.db_" version ".tar.gz")) + (sha256 + (base32 + "1qxz9l80yg3qdqszs6dsscp7lrpfi1bgd0pxh9j7q34vprzwhdim")))) + (properties + `((upstream-name . "org.Hs.eg.db"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi))) + (home-page "https://www.bioconductor.org/packages/org.Hs.eg.db/") + (synopsis "Genome wide annotation for Human") + (description + "This package contains genome-wide annotations for Human, primarily based +on mapping using Entrez Gene identifiers.") + (license license:artistic2.0))) + (define-public r-bsgenome-hsapiens-ucsc-hg19 (package (name "r-bsgenome-hsapiens-ucsc-hg19") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 0fffbf82d0..b06c8cf1fd 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7980,32 +7980,6 @@ genomation package. Included are Chip Seq, Methylation and Cage data, downloaded from Encode.") (license license:gpl3+))) -(define-public r-org-hs-eg-db - (package - (name "r-org-hs-eg-db") - (version "3.7.0") - (source (origin - (method url-fetch) - ;; We cannot use bioconductor-uri here because this tarball is - ;; located under "data/annotation/" instead of "bioc/". - (uri (string-append "https://www.bioconductor.org/packages/" - "release/data/annotation/src/contrib/" - "org.Hs.eg.db_" version ".tar.gz")) - (sha256 - (base32 - "1qxz9l80yg3qdqszs6dsscp7lrpfi1bgd0pxh9j7q34vprzwhdim")))) - (properties - `((upstream-name . "org.Hs.eg.db"))) - (build-system r-build-system) - (propagated-inputs - `(("r-annotationdbi" ,r-annotationdbi))) - (home-page "https://www.bioconductor.org/packages/org.Hs.eg.db/") - (synopsis "Genome wide annotation for Human") - (description - "This package contains genome-wide annotations for Human, primarily based -on mapping using Entrez Gene identifiers.") - (license license:artistic2.0))) - (define-public r-org-mm-eg-db (package (name "r-org-mm-eg-db") |