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authorRicardo Wurmus <rekado@elephly.net>2018-06-15 07:24:23 +0200
committerRicardo Wurmus <rekado@elephly.net>2018-06-15 07:43:22 +0200
commitbb15b581f74dbf4f06425e3ef0aae1863adca377 (patch)
treeecf60f60e5ade51e598435a538c307c710dc9a9c /gnu/packages
parentb494bbe466419dcac9f415c1152131f012b9555e (diff)
downloadpatches-bb15b581f74dbf4f06425e3ef0aae1863adca377.tar
patches-bb15b581f74dbf4f06425e3ef0aae1863adca377.tar.gz
gnu: Add r-bayseq.
* gnu/packages/bioconductor.scm (r-bayseq): New variable.
Diffstat (limited to 'gnu/packages')
-rw-r--r--gnu/packages/bioconductor.scm26
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ed35b4c61a..3dba9cbab4 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -371,3 +371,29 @@ filtered to remove spurious regions in the genome. Downstream steps of
segmentation and calling are also implemented via packages DNAcopy and CGHcall,
respectively.")
(license license:gpl2+)))
+
+(define-public r-bayseq
+ (package
+ (name "r-bayseq")
+ (version "2.14.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "baySeq" version))
+ (sha256
+ (base32
+ "0hbmm01a8libara9mbxknpk0wzarwfngnfwlmhpww91a0cmy5klg"))))
+ (properties `((upstream-name . "baySeq")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-abind" ,r-abind)
+ ("r-edger" ,r-edger)
+ ("r-genomicranges" ,r-genomicranges)))
+ (home-page "https://bioconductor.org/packages/baySeq/")
+ (synopsis "Bayesian analysis of differential expression patterns in count data")
+ (description
+ "This package identifies differential expression in high-throughput count
+data, such as that derived from next-generation sequencing machines,
+calculating estimated posterior likelihoods of differential expression (or
+more complex hypotheses) via empirical Bayesian methods.")
+ (license license:gpl3)))