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| author | Paul Garlick <pgarlick@tourbillion-technology.com> | 2018-09-03 11:57:38 +0100 |
|---|---|---|
| committer | Ludovic Courtès <ludo@gnu.org> | 2018-09-04 15:22:48 +0200 |
| commit | 71ca16b58d20aa26157acc4c345c0af80ec8df5d (patch) | |
| tree | 8e37985e39de9fc692d2f3017417535e14668329 /gnu/packages | |
| parent | b50658fe8ac898544a5c481f232a454c485524b9 (diff) | |
| download | patches-71ca16b58d20aa26157acc4c345c0af80ec8df5d.tar patches-71ca16b58d20aa26157acc4c345c0af80ec8df5d.tar.gz | |
gnu: petsc-openmpi: Configure with support for hdf5 data format.
* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add
hdf5-parallel-openmpi.
[arguments]: Add '--with-hdf5-include' and '--with-hdf5-lib'
flags. Add 'set-test-environment' phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/maths.scm | 19 |
1 files changed, 17 insertions, 2 deletions
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 50c0a320e0..42136f65ea 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -15,7 +15,7 @@ ;;; Copyright © 2016, 2017, 2018 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2016 Leo Famulari <leo@famulari.name> ;;; Copyright © 2016, 2017 Thomas Danckaert <post@thomasdanckaert.be> -;;; Copyright © 2017 Paul Garlick <pgarlick@tourbillion-technology.com> +;;; Copyright © 2017, 2018 Paul Garlick <pgarlick@tourbillion-technology.com> ;;; Copyright © 2017 Nils Gillmann <ng0@n0.is> ;;; Copyright © 2017 Ben Woodcroft <donttrustben@gmail.com> ;;; Copyright © 2017 Theodoros Foradis <theodoros@foradis.org> @@ -1685,6 +1685,7 @@ scientific applications modeled by partial differential equations.") (name "petsc-openmpi") (inputs `(("openmpi" ,openmpi) + ("hdf5" ,hdf5-parallel-openmpi) ,@(package-inputs petsc))) (arguments (substitute-keyword-arguments (package-arguments petsc) @@ -1692,7 +1693,21 @@ scientific applications modeled by partial differential equations.") ``("--with-mpiexec=mpirun" ,(string-append "--with-mpi-dir=" (assoc-ref %build-inputs "openmpi")) - ,@(delete "--with-mpi=0" ,cf))))) + ,(string-append "--with-hdf5-include=" + (assoc-ref %build-inputs "hdf5") "/include") + ,(string-append "--with-hdf5-lib=" + (assoc-ref %build-inputs "hdf5") "/lib/libhdf5.a") + ,@(delete "--with-mpi=0" ,cf))) + ((#:phases phases) + `(modify-phases ,phases + (add-before 'check 'set-test-environment + (lambda _ + ;; By default, running the test suite would fail because 'ssh' + ;; could not be found in $PATH. Define this variable to + ;; placate Open MPI without adding a dependency on OpenSSH (the + ;; agent isn't used anyway.) + (setenv "OMPI_MCA_plm_rsh_agent" (which "cat")) + #t)))))) (synopsis "Library to solve PDEs (with MPI support)"))) (define-public petsc-complex-openmpi |