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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-13 13:16:48 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-13 13:17:52 +0100 |
| commit | 34a24f95ece7be7e5174513091ecd3c4974ce631 (patch) | |
| tree | ed61ae8b40621d7b4513d852fba1e3ceeb6e061e /gnu/packages | |
| parent | f4eac09653ddebbe57e16824da42aad04af35632 (diff) | |
| download | patches-34a24f95ece7be7e5174513091ecd3c4974ce631.tar patches-34a24f95ece7be7e5174513091ecd3c4974ce631.tar.gz | |
gnu: Add r-bumphunter.
* gnu/packages/bioconductor.scm (r-bumphunter): New variable.
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index b29ae9d607..34f5ceb5aa 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2200,3 +2200,37 @@ expressed genes and estimation of the @dfn{False Discovery Rate} (FDR) using both the Significance Analysis of Microarrays (SAM) and the @dfn{Empirical Bayes Analyses of Microarrays} (EBAM).") (license license:lgpl2.0+))) + +(define-public r-bumphunter + (package + (name "r-bumphunter") + (version "1.24.5") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "bumphunter" version)) + (sha256 + (base32 + "1f9vk3srffbx8jpza40nd18a4y0p0z8q40mx55dlcnddkwrqi19b")))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-biocgenerics" ,r-biocgenerics) + ("r-dorng" ,r-dorng) + ("r-foreach" ,r-foreach) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicfeatures" ,r-genomicfeatures) + ("r-genomicranges" ,r-genomicranges) + ("r-iranges" ,r-iranges) + ("r-iterators" ,r-iterators) + ("r-limma" ,r-limma) + ("r-locfit" ,r-locfit) + ("r-matrixstats" ,r-matrixstats) + ("r-s4vectors" ,r-s4vectors))) + (home-page "https://github.com/ririzarr/bumphunter") + (synopsis "Find bumps in genomic data") + (description + "This package provides tools for finding bumps in genomic data in order +to identify differentially methylated regions in epigenetic epidemiology +studies.") + (license license:artistic2.0))) |