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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-06 21:43:33 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-06 21:43:33 +0100 |
| commit | 8035819f4c93e1be4a4b7d6d015362461a00865c (patch) | |
| tree | 0bd666e5203506efa1c352ac542adb6b1340ee35 /gnu/packages | |
| parent | d56df35a259dd1faea7780f4ceff84a9c96c699b (diff) | |
| download | patches-8035819f4c93e1be4a4b7d6d015362461a00865c.tar patches-8035819f4c93e1be4a4b7d6d015362461a00865c.tar.gz | |
gnu: r-org-mm-eg-db: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-mm-eg-db): ...to here.
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 26 | ||||
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 26 |
2 files changed, 26 insertions, 26 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 7079092335..1d36910637 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -464,6 +464,32 @@ based on mapping using Entrez Gene identifiers.") on mapping using Entrez Gene identifiers.") (license license:artistic2.0))) +(define-public r-org-mm-eg-db + (package + (name "r-org-mm-eg-db") + (version "3.7.0") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "https://www.bioconductor.org/packages/" + "release/data/annotation/src/contrib/" + "org.Mm.eg.db_" version ".tar.gz")) + (sha256 + (base32 + "1i3nvrd3wjigf1rmgxq1p5xxc3p8v02h5gwi62s30rkrsyjjfjxx")))) + (properties + `((upstream-name . "org.Mm.eg.db"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi))) + (home-page "https://www.bioconductor.org/packages/org.Mm.eg.db/") + (synopsis "Genome wide annotation for Mouse") + (description + "This package provides mappings from Entrez gene identifiers to various +annotations for the genome of the model mouse Mus musculus.") + (license license:artistic2.0))) + (define-public r-bsgenome-hsapiens-ucsc-hg19 (package (name "r-bsgenome-hsapiens-ucsc-hg19") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b06c8cf1fd..c0e4628a64 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7980,32 +7980,6 @@ genomation package. Included are Chip Seq, Methylation and Cage data, downloaded from Encode.") (license license:gpl3+))) -(define-public r-org-mm-eg-db - (package - (name "r-org-mm-eg-db") - (version "3.7.0") - (source (origin - (method url-fetch) - ;; We cannot use bioconductor-uri here because this tarball is - ;; located under "data/annotation/" instead of "bioc/". - (uri (string-append "https://www.bioconductor.org/packages/" - "release/data/annotation/src/contrib/" - "org.Mm.eg.db_" version ".tar.gz")) - (sha256 - (base32 - "1i3nvrd3wjigf1rmgxq1p5xxc3p8v02h5gwi62s30rkrsyjjfjxx")))) - (properties - `((upstream-name . "org.Mm.eg.db"))) - (build-system r-build-system) - (propagated-inputs - `(("r-annotationdbi" ,r-annotationdbi))) - (home-page "https://www.bioconductor.org/packages/org.Mm.eg.db/") - (synopsis "Genome wide annotation for Mouse") - (description - "This package provides mappings from Entrez gene identifiers to various -annotations for the genome of the model mouse Mus musculus.") - (license license:artistic2.0))) - (define-public r-seqlogo (package (name "r-seqlogo") |