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authorRicardo Wurmus <rekado@elephly.net>2019-09-15 21:03:54 +0200
committerRicardo Wurmus <rekado@elephly.net>2019-09-15 21:07:56 +0200
commite5dfcd8e262473a12ae00f5fa1ebf2bd8a90ea89 (patch)
treeff4ac860a3bb5f47eac05029e3e131f619d8ee74 /gnu/packages
parent12105c6c3a900ba35533c15c71d59acf151b5627 (diff)
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gnu: Add r-seqbias.
* gnu/packages/bioconductor.scm (r-seqbias): New variable.
Diffstat (limited to 'gnu/packages')
-rw-r--r--gnu/packages/bioconductor.scm28
1 files changed, 28 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index df50fbc547..ce43bfe8b9 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -5701,6 +5701,34 @@ with multiple R processes supported by the package @code{parallel}.")
@code{gdsfmt} package.")
(license license:gpl3)))
+(define-public r-seqbias
+ (package
+ (name "r-seqbias")
+ (version "1.32.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "seqbias" version))
+ (sha256
+ (base32
+ "1pk97jsq0rxijsdm5wnmlw79mhy19skdq1h3mmfbdjh560md47lw"))))
+ (properties `((upstream-name . "seqbias")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biostrings" ,r-biostrings)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-rhtslib" ,r-rhtslib)))
+ (inputs
+ `(("zlib" ,zlib))) ; This comes from rhtslib.
+ (home-page "https://bioconductor.org/packages/seqbias/")
+ (synopsis "Estimation of per-position bias in high-throughput sequencing data")
+ (description
+ "This package implements a model of per-position sequencing bias in
+high-throughput sequencing data using a simple Bayesian network, the structure
+and parameters of which are trained on a set of aligned reads and a reference
+genome sequence.")
+ (license license:lgpl3)))
+
(define-public r-wavcluster
(package
(name "r-wavcluster")