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| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2016-08-17 17:32:52 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2016-08-17 19:35:05 +0200 |
| commit | 433530a5fcfd379cd954d84588ca600ad5867653 (patch) | |
| tree | c3b18cdb18400765c98411e686ec6b632ca4983e /gnu/packages | |
| parent | 316a5d02b07cefbe8d54880a0c2effe563ca0661 (diff) | |
| download | patches-433530a5fcfd379cd954d84588ca600ad5867653.tar patches-433530a5fcfd379cd954d84588ca600ad5867653.tar.gz | |
gnu: clipper: Update to 1.1.
* gnu/packages/bioinformatics.scm (clipper): Update to 1.1.
[source]: Delete pre-built libraries.
[inputs]: Add python2-pandas.
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 17 |
1 files changed, 12 insertions, 5 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b31cf7cfe6..233b7a8879 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1422,7 +1422,7 @@ databases.") (define-public clipper (package (name "clipper") - (version "0.3.0") + (version "1.1") (source (origin (method url-fetch) (uri (string-append @@ -1431,12 +1431,18 @@ databases.") (file-name (string-append name "-" version ".tar.gz")) (sha256 (base32 - "1q7jpimsqln7ic44i8v2rx2haj5wvik8hc1s2syd31zcn0xk1iyq")) + "0pflmsvhbf8izbgwhbhj1i7349sw1f55qpqj8ljmapp16hb0p0qi")) (modules '((guix build utils))) (snippet - ;; remove unnecessary setup dependency - '(substitute* "setup.py" - (("setup_requires = .*") ""))))) + '(begin + ;; remove unnecessary setup dependency + (substitute* "setup.py" + (("setup_requires = .*") "")) + (for-each delete-file + '("clipper/src/peaks.so" + "clipper/src/readsToWiggle.so")) + (delete-file-recursively "dist/") + #t)))) (build-system python-build-system) (arguments `(#:python ,python-2)) ; only Python 2 is supported (inputs @@ -1445,6 +1451,7 @@ databases.") ("python-cython" ,python2-cython) ("python-scikit-learn" ,python2-scikit-learn) ("python-matplotlib" ,python2-matplotlib) + ("python-pandas" ,python2-pandas) ("python-pysam" ,python2-pysam) ("python-numpy" ,python2-numpy) ("python-scipy" ,python2-scipy))) |