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authorRicardo Wurmus <rekado@elephly.net>2019-03-06 10:29:25 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-03-06 10:29:25 +0100
commit3dad6087beaef0ff5343858f26b0c1ec7e328c16 (patch)
treef0fa96cceacb7780ea9dfaca32ca19b90a716a4d /gnu/packages
parent43d6776ba42e8542358a48bc80749d50b9d34bb7 (diff)
downloadpatches-3dad6087beaef0ff5343858f26b0c1ec7e328c16.tar
patches-3dad6087beaef0ff5343858f26b0c1ec7e328c16.tar.gz
gnu: Add r-org-dr-eg-db.
* gnu/packages/bioconductor.scm (r-org-dr-eg-db): New variable.
Diffstat (limited to 'gnu/packages')
-rw-r--r--gnu/packages/bioconductor.scm26
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ae9d7070c3..ed950d5687 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -170,6 +170,32 @@ Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by
default." )
(license license:artistic2.0)))
+(define-public r-org-dr-eg-db
+ (package
+ (name "r-org-dr-eg-db")
+ (version "3.7.0")
+ (source (origin
+ (method url-fetch)
+ ;; We cannot use bioconductor-uri here because this tarball is
+ ;; located under "data/annotation/" instead of "bioc/".
+ (uri (string-append "https://www.bioconductor.org/packages/"
+ "release/data/annotation/src/contrib/"
+ "org.Dr.eg.db_" version ".tar.gz"))
+ (sha256
+ (base32
+ "1xs5wsbcpy0iwbjyiv7fax57djqc529ai5fk1qfsdcvlja3cpglx"))))
+ (properties
+ `((upstream-name . "org.Dr.eg.db")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)))
+ (home-page "https://www.bioconductor.org/packages/org.Dr.eg.db/")
+ (synopsis "Annotation for Zebrafish")
+ (description
+ "This package provides genome wide annotations for Zebrafish, primarily
+based on mapping using Entrez Gene identifiers.")
+ (license license:artistic2.0)))
+
(define-public r-genelendatabase
(package
(name "r-genelendatabase")