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authorRoel Janssen <roel@gnu.org>2020-04-27 10:24:20 +0200
committerRoel Janssen <roel@gnu.org>2020-04-27 10:24:20 +0200
commite8d435f7a2919e8f05fc3822d1a43f50c6c5cc8a (patch)
treeb54ae2acd4c32954fb5afc74f1e1e26f3d75d0ff /gnu/packages
parentdf6c7f04878f9881d805517f77a8dc493edd8a8f (diff)
downloadpatches-e8d435f7a2919e8f05fc3822d1a43f50c6c5cc8a.tar
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gnu: Add r-ideoviz.
* gnu/packages/bioconductor.scm (r-ideoviz): New variable.
Diffstat (limited to 'gnu/packages')
-rw-r--r--gnu/packages/bioconductor.scm26
1 files changed, 25 insertions, 1 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 0fc0d7b839..9540de3b72 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1,6 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2016, 2017, 2018, 2019, 2020 Ricardo Wurmus <rekado@elephly.net>
-;;; Copyright © 2016, 2017, 2018 Roel Janssen <roel@gnu.org>
+;;; Copyright © 2016, 2017, 2018, 2020 Roel Janssen <roel@gnu.org>
;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2019 Simon Tournier <zimon.toutoune@gmail.com>
;;;
@@ -718,6 +718,30 @@ annotations.")
"This is a manifest package for Illumina's EPIC methylation arrays.")
(license license:artistic2.0)))
+(define-public r-ideoviz
+ (package
+ (name "r-ideoviz")
+ (version "1.22.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "IdeoViz" version))
+ (sha256
+ (base32
+ "0rsz6dawrx5qdrypxs2hgihmx3kbpdg1y73h876yxccgdlabvzil"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-iranges" ,r-iranges)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-rcolorbrewer" ,r-rcolorbrewer)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-genomeinfodb" ,r-genomeinfodb)))
+ (home-page "https://bioconductor.org/packages/IdeoViz/")
+ (synopsis "Plots data along a chromosomal ideogram")
+ (description "This package provides functions to plot data associated with
+arbitrary genomic intervals along chromosomal ideogram.")
+ (license license:gpl2)))
+
;; This is a CRAN package, but it depends on r-bsgenome-hsapiens-ucsc-hg19
;; from Bioconductor.
(define-public r-deconstructsigs