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| author | Ricardo Wurmus <rekado@elephly.net> | 2020-04-17 15:50:29 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2020-04-17 15:53:03 +0200 |
| commit | 974bf81776bd13f2162ebc0b2b01466509840b12 (patch) | |
| tree | ef5b1288d99008237ef1ca4ee0bfdc2659f0cbdc /gnu/packages | |
| parent | d8fce2362bbd4d35c1b4b7dfb5babdf9a86bc4bb (diff) | |
| download | patches-974bf81776bd13f2162ebc0b2b01466509840b12.tar patches-974bf81776bd13f2162ebc0b2b01466509840b12.tar.gz | |
gnu: python-pygenometracks: Update to 3.3.
* gnu/packages/bioinformatics.scm (python-pygenometracks): Update to 3.3.
[arguments]: Add phase "relax-requirements"; disable tests.
[propagated-inputs]: Remove python-configparser and python-hicexplorer; add
python-gffutils, python-pysam, and python-tqdm.
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 24 |
1 files changed, 18 insertions, 6 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index a2c168b01c..b9be0c1918 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13773,23 +13773,35 @@ genomic scores), long range contacts and the visualization of viewpoints.") (define-public python-pygenometracks (package (name "python-pygenometracks") - (version "2.0") + (version "3.3") (source (origin (method url-fetch) (uri (pypi-uri "pyGenomeTracks" version)) (sha256 (base32 - "1fws6bqsyy9kj3qiabhkqx4wd4i775gsxnhszqd3zg7w67sc1ic5")))) + "16laa0wnf4qn9fb9ych4w1vqhqwjss70v0y0f6wp4gwqfrlgac0f")))) (build-system python-build-system) + (arguments + `(#:tests? #f ; there are none + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'relax-requirements + (lambda _ + (substitute* "setup.py" + (("matplotlib ==3.1.1") + "matplotlib >=3.1.1")) + #t))))) (propagated-inputs - `(("python-configparser" ,python-configparser) - ("python-future" ,python-future) - ("python-hicexplorer" ,python-hicexplorer) + `(("python-future" ,python-future) + ("python-gffutils" ,python-gffutils) + ("python-hicmatrix" ,python-hicmatrix) ("python-intervaltree" ,python-intervaltree) ("python-matplotlib" ,python-matplotlib) ("python-numpy" ,python-numpy) - ("python-pybigwig" ,python-pybigwig))) + ("python-pybigwig" ,python-pybigwig) + ("python-pysam" ,python-pysam) + ("python-tqdm" ,python-tqdm))) (native-inputs `(("python-pytest" ,python-pytest))) (home-page "https://pygenometracks.readthedocs.io") |