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| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2015-05-04 11:27:39 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2015-05-04 11:29:41 +0200 |
| commit | 4702cec24637fc9cb5ed544817d56e9770b21ebf (patch) | |
| tree | 7682a8489e79a1928fbda6d74697904ee17ca99a /gnu/packages | |
| parent | a73956baf4d1f103fbb574c5f0880e10de1c027b (diff) | |
| download | patches-4702cec24637fc9cb5ed544817d56e9770b21ebf.tar patches-4702cec24637fc9cb5ed544817d56e9770b21ebf.tar.gz | |
gnu: bamtools: Set rpath via LDFLAGS.
* gnu/packages/bioinformatics.scm (bamtools): Add a pre-configure phase
setting $LDFLAGS to set the rpath to $out/lib/bamtools.
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 12 |
1 files changed, 11 insertions, 1 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 8bc5b868ec..7dc1bc48ce 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -62,7 +62,17 @@ (base32 "1brry29bw2xr2l9pqn240rkqwayg85b8qq78zk2zs6nlspk4d018")))) (build-system cmake-build-system) - (arguments `(#:tests? #f)) ;no "check" target + (arguments + `(#:tests? #f ;no "check" target + #:phases + (modify-phases %standard-phases + (add-before + 'configure 'set-ldflags + (lambda* (#:key outputs #:allow-other-keys) + (setenv "LDFLAGS" + (string-append + "-Wl,-rpath=" + (assoc-ref outputs "out") "/lib/bamtools"))))))) (inputs `(("zlib" ,zlib))) (home-page "https://github.com/pezmaster31/bamtools") (synopsis "C++ API and command-line toolkit for working with BAM data") |