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| author | Thomas Danckaert <post@thomasdanckaert.be> | 2017-08-24 11:00:59 +0200 |
|---|---|---|
| committer | Thomas Danckaert <thomas.danckaert@gmail.com> | 2017-09-01 08:34:24 +0200 |
| commit | e3a1a1deda03e52fbdb38e9c7a92ce69f78c8eb3 (patch) | |
| tree | 441fe23102d055656ce5b77e32372ef0cdab2a2f /gnu/packages | |
| parent | a0596a2f27c339bcb4c5d3f2ffc8d6df38ff7947 (diff) | |
| download | patches-e3a1a1deda03e52fbdb38e9c7a92ce69f78c8eb3.tar patches-e3a1a1deda03e52fbdb38e9c7a92ce69f78c8eb3.tar.gz | |
gnu: hdf5: Add output for fortran interface.
* gnu/packages/maths.scm (hdf5) [native-inputs]: Add gfortran.
[outputs]: Add "fortran".
[arguments]: Enable Fortran compilation; add "/lib" directory of the fortran
output to the runpath of the Fortran libs; add a 'split phase to move
all Fortran-related files to the the Fortran output store location.
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/maths.scm | 53 |
1 files changed, 50 insertions, 3 deletions
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 7481636faa..b56153199b 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -648,16 +648,30 @@ incompatible with HDF5.") (build-system gnu-build-system) (inputs `(("zlib" ,zlib))) + (native-inputs + `(("gfortran" ,gfortran))) + (outputs '("out" ; core library + "fortran")) ; fortran interface (arguments `(;; Some of the users, notably Flann, need the C++ interface. - #:configure-flags '("--enable-cxx") + #:configure-flags '("--enable-cxx" + "--enable-fortran" + "--enable-fortran2003") #:phases (modify-phases %standard-phases (add-before 'configure 'patch-configure - (lambda _ + (lambda* (#:key outputs #:allow-other-keys) (substitute* "configure" (("/bin/mv") "mv")) + (substitute* "fortran/src/Makefile.in" + (("libhdf5_fortran_la_LDFLAGS =") + (string-append "libhdf5_fortran_la_LDFLAGS = -Wl-rpath=" + (assoc-ref outputs "fortran") "/lib"))) + (substitute* "hl/fortran/src/Makefile.in" + (("libhdf5hl_fortran_la_LDFLAGS =") + (string-append "libhdf5hl_fortran_la_LDFLAGS = -Wl,-rpath=" + (assoc-ref outputs "fortran") "/lib"))) #t)) (add-after 'install 'patch-references (lambda* (#:key inputs outputs #:allow-other-keys) @@ -666,7 +680,40 @@ incompatible with HDF5.") (substitute* (find-files bin "h5p?cc") (("-lz" lib) (string-append "-L" zlib "/lib " lib))) - #t)))))) + #t))) + (add-after 'install 'split + (lambda* (#:key inputs outputs #:allow-other-keys) + ;; Move all fortran-related files + (let* ((out (assoc-ref outputs "out")) + (bin (string-append out "/bin")) + (lib (string-append out "/lib")) + (inc (string-append out "/include")) + (ex (string-append out "/share/hdf5_examples/fortran")) + (fort (assoc-ref outputs "fortran")) + (fbin (string-append fort "/bin")) + (flib (string-append fort "/lib")) + (finc (string-append fort "/include")) + (fex (string-append fort "/share/hdf5_examples/fortran"))) + (mkdir-p fbin) + (mkdir-p flib) + (mkdir-p finc) + (mkdir-p fex) + (rename-file (string-append bin "/h5fc") + (string-append fbin "/h5fc")) + (for-each (lambda (file) + (rename-file file + (string-append flib "/" (basename file)))) + (find-files lib ".*fortran.*")) + (for-each (lambda (file) + (rename-file file + (string-append finc "/" (basename file)))) + (find-files inc ".*mod")) + (for-each (lambda (file) + (rename-file file + (string-append fex "/" (basename file)))) + (find-files ex ".*")) + (delete-file-recursively ex)) + #t))))) (home-page "http://www.hdfgroup.org") (synopsis "Management suite for extremely large and complex data") (description "HDF5 is a suite that makes possible the management of |