aboutsummaryrefslogtreecommitdiff
path: root/gnu/packages
diff options
context:
space:
mode:
authorRicardo Wurmus <rekado@elephly.net>2019-09-02 14:39:11 +0200
committerRicardo Wurmus <rekado@elephly.net>2019-09-02 14:40:56 +0200
commit32fcd898f0e73b34dd8f11af952b87707e461f7a (patch)
tree31d5bb9bd135b823f27b5a7fa088dc55c383226a /gnu/packages
parent91addfe05c14b6ee10890dfba43847a8a607819a (diff)
downloadpatches-32fcd898f0e73b34dd8f11af952b87707e461f7a.tar
patches-32fcd898f0e73b34dd8f11af952b87707e461f7a.tar.gz
gnu: r-seurat: Update to 3.1.0.
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.0. [propagated-inputs]: Add r-leiden, r-rcppannoy, and r-uwot.
Diffstat (limited to 'gnu/packages')
-rw-r--r--gnu/packages/bioinformatics.scm9
1 files changed, 6 insertions, 3 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 7d6d5e8c48..2c6648b294 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9457,13 +9457,13 @@ and irregular enzymatic cleavages, mass measurement accuracy, etc.")
(define-public r-seurat
(package
(name "r-seurat")
- (version "3.0.2")
+ (version "3.1.0")
(source (origin
(method url-fetch)
(uri (cran-uri "Seurat" version))
(sha256
(base32
- "016fgcmjz3sjfxdvam5hd7mdxpmpnc7f6p5zqlh97m21dgn5vpqn"))))
+ "0icxndnnkkmmr9hhd01dv3w8pih7x9r0rlp3fq9pk3qajp9gmlyq"))))
(properties `((upstream-name . "Seurat")))
(build-system r-build-system)
(propagated-inputs
@@ -9480,6 +9480,7 @@ and irregular enzymatic cleavages, mass measurement accuracy, etc.")
("r-igraph" ,r-igraph)
("r-irlba" ,r-irlba)
("r-kernsmooth" ,r-kernsmooth)
+ ("r-leiden" ,r-leiden)
("r-lmtest" ,r-lmtest)
("r-mass" ,r-mass)
("r-matrix" ,r-matrix)
@@ -9490,6 +9491,7 @@ and irregular enzymatic cleavages, mass measurement accuracy, etc.")
("r-rann" ,r-rann)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-rcpp" ,r-rcpp)
+ ("r-rcppannoy" ,r-rcppannoy)
("r-rcppeigen" ,r-rcppeigen)
("r-rcppprogress" ,r-rcppprogress)
("r-reticulate" ,r-reticulate)
@@ -9500,7 +9502,8 @@ and irregular enzymatic cleavages, mass measurement accuracy, etc.")
("r-scales" ,r-scales)
("r-sctransform" ,r-sctransform)
("r-sdmtools" ,r-sdmtools)
- ("r-tsne" ,r-tsne)))
+ ("r-tsne" ,r-tsne)
+ ("r-uwot" ,r-uwot)))
(home-page "http://www.satijalab.org/seurat")
(synopsis "Seurat is an R toolkit for single cell genomics")
(description