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author | Raoul Jean Pierre Bonnal <ilpuccio.febo@gmail.com> | 2016-12-27 22:11:28 +0100 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2017-01-31 22:35:08 +0100 |
commit | d4af25b51bbe9980340d70ae103ec92a284e69ce (patch) | |
tree | d8de2c10c2bbafbfe6d987418fb8a2ea054f0090 /gnu/packages | |
parent | f5c8cf3be7a0a19f00cf541020fc6f37d9be2474 (diff) | |
download | patches-d4af25b51bbe9980340d70ae103ec92a284e69ce.tar patches-d4af25b51bbe9980340d70ae103ec92a284e69ce.tar.gz |
gnu: Add r-tximport.
Diffstat (limited to 'gnu/packages')
-rw-r--r-- | gnu/packages/bioinformatics.scm | 22 |
1 files changed, 22 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c605c58ea6..f8f6ea1ee7 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7800,6 +7800,28 @@ for DNA and protein sequences. This package supports several sequence kernels, including: gkmSVM, kmer-SVM, mismatch kernel and wildcard kernel.") (license license:gpl2+))) +(define-public r-tximport + (package + (name "r-tximport") + (version "1.2.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "tximport" version)) + (sha256 + (base32 + "1k5a7dad6zqg936s17f6cmwgqp11x24z9zhxndsgwbscgpyhpcb0")))) + (build-system r-build-system) + (home-page "http://bioconductor.org/packages/tximport") + (synopsis "Import and summarize transcript-level estimates for gene-level analysis") + (description + "This package provides tools to import transcript-level abundance, +estimated counts and transcript lengths, and to summarize them into matrices +for use with downstream gene-level analysis packages. Average transcript +length, weighted by sample-specific transcript abundance estimates, is +provided as a matrix which can be used as an offset for different expression +of gene-level counts.") + (license license:gpl2+))) + (define-public emboss (package (name "emboss") |