summaryrefslogtreecommitdiff
path: root/gnu/packages
diff options
context:
space:
mode:
authorRicardo Wurmus <rekado@elephly.net>2017-04-08 10:24:04 +0200
committerRicardo Wurmus <rekado@elephly.net>2017-04-08 10:25:50 +0200
commit1d65b5379b33951298cb8a763e0140bb1ec43404 (patch)
treeff155ca39aff844cdb48749e2b7582bcb6a9097a /gnu/packages
parent1c8ee3fcc2866e214ddf16596f26d8caad75999f (diff)
downloadpatches-1d65b5379b33951298cb8a763e0140bb1ec43404.tar
patches-1d65b5379b33951298cb8a763e0140bb1ec43404.tar.gz
gnu: r-vegan: Update to 2.4-3.
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-3. [arguments]: Remove build phase "revert-test-deletion". [native-inputs]: Remove "r-vegan-delete-tests-patch".
Diffstat (limited to 'gnu/packages')
-rw-r--r--gnu/packages/bioinformatics.scm28
1 files changed, 3 insertions, 25 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 48cf12ff4d..3626db9aae 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5356,40 +5356,18 @@ information as possible.")
(define-public r-vegan
(package
(name "r-vegan")
- (version "2.4-2")
+ (version "2.4-3")
(source
(origin
(method url-fetch)
(uri (cran-uri "vegan" version))
(sha256
(base32
- "12wf64izrpq9z3ix7mgm5421mq0xsm8dw5qblvcrz452nfhjf5w9"))))
+ "15zcxfix2d854897k1lr0sfmj2n00339nlsppcr3zrb238lb2mi5"))))
(build-system r-build-system)
- (arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'revert-test-deletion
- ;; The distributed sources do not include tests with the CRAN
- ;; package. Here we revert the commit
- ;; `591d0e8ba1deaaf82445474ec6619c0b43db4e63' which deletes these
- ;; tests. There are plans to not delete tests in future as
- ;; documented at https://github.com/vegandevs/vegan/issues/181.
- (lambda* (#:key inputs #:allow-other-keys)
- (zero?
- (system* "patch" "-R" "-p1" "-i"
- (assoc-ref inputs "r-vegan-delete-tests-patch"))))))))
(native-inputs
`(("gfortran" ,gfortran)
- ("r-knitr" ,r-knitr)
- ("r-vegan-delete-tests-patch"
- ,(origin
- (method url-fetch)
- (uri (string-append
- "https://github.com/vegandevs/vegan/commit/"
- "591d0e8ba1deaaf82445474ec6619c0b43db4e63.patch"))
- (sha256
- (base32
- "0b1bi7y4jjdl3ph721vm9apm51dr2z9piwvhy4355sf2b4kyyj5a"))))))
+ ("r-knitr" ,r-knitr)))
(propagated-inputs
`(("r-cluster" ,r-cluster)
("r-lattice" ,r-lattice)